Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

26242886 .. 26247143

Gene Structure 4258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48753

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGGATCGTTACCTTGCTCATCAGCGAGGACAAGACCGTCATTGTCACGTTTGAAACATTGAGAGAAACATTGAAGGGTCATCAATTCCGAACTGGCAGTGACTGTGAAGTGATAGCGCATCTTTACGAGGAACATGAGGAAGAATTTGTTGACATGCTGGACGGGATATTCCTTGTCCTCCTTGATACGAGAGACAACACTTTCATTGCGGCTCGAGATGCTATTGGCATAACCCCACTGTACATGGGTTGGGGTCTTGATGGAGGGCTGAGAAGGTGGTACAATCCACAATGGTTTTTGGAGAAGATACCATCGACTCCTTATGATCCCATTGTTTTACTCCAGGCTTTTGAGAACCCTGTGTTAAAGAGACTTATGACAGATGTACCATTCAGTGTTCTTTTGTCTGGAGGATTGGACTCATCACTCGTTGCTGCTGTGGCTTGTCGCTACTTGGCTAAATCAGAAGCTGCACGTCAGTGGGGGTCACAATTACATACCTTTTGTGTTGGCTTGGAGGGTTATCCAGATTTGAAAGCAGCAAGAGAAGTTGCAGATTATCTTGGGACTCATCATCACGAGTTTCACTTTACTGTTCAGGAAGGCATAGATGCACTTGAAGAAGTTATCTACCATATTGAGACATATGATGTGACCACTGTCAGAGCCAGCACTCCAATGTTTCTTATGTCTCGTAAAATTAAATCTCTGGGAGTAAAAATGGTCCTTTCTGGTGAAGGTTCGGATGAAATCTTTGGTGGCTACTTGAATTTCCACAAGGCCCCAAACAAGGAGGAGTTTCACCAAGAAACATGCCAGAGGATTAAAGGTCTTCATCTGTATGACTGTCTGAGGGCCAGCAAATCAACATCAGCTTGGGGTGTTGAGGCTCGTGCACCGTTTCTTGACAAAGAATATATCGACTGCTATGGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

313

Amino Acids

35.42

Weight (kDa)

5.22

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_7	PF13537	15 - 86	2.6e-17	Glutamine amidotransferase domain
GATase_6	PF13522	15 - 85	3.7e-12	Glutamine amidotransferase domain
Asn_synthase	PF00733	115 - 265	2.2e-50	Asparagine synthase
Asn_synthase	PF00733	263 - 308	1.3e-07	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	2 cut(s)	14, 323
AcsI	RAATTY	2 cut(s)	146, 772
AfaI	GTAC	3 cut(s)	245, 284, 390
AfiI	CCNNNNNNNGG	1 cut(s)	793
AgsI	TTSAA	5 cut(s)	56, 76, 538, 623, 772
AjiI	CACGTC	1 cut(s)	479
AjnI	CCWGG	1 cut(s)	345
AleI	CACNNNNGTG	1 cut(s)	481
AluBI	AGCT	2 cut(s)	473, 878
AluI	AGCT	2 cut(s)	473, 878
Alw21I	GWGCWC	1 cut(s)	901
Alw26I	GTCTC	4 cut(s)	189, 367, 638, 699
Alw44I	GTGCAC	1 cut(s)	897
AlwI	GGATC	2 cut(s)	14, 323
AlwNI	CAGNNNCTG	2 cut(s)	105, 473
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	2 cut(s)	783, 858
ApaLI	GTGCAC	1 cut(s)	897
ApeKI	GCWGC	3 cut(s)	437, 473, 542
ApoI	RAATTY	2 cut(s)	146, 772
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	3 cut(s)	727, 784, 858
AsuHPI	GGTGA	2 cut(s)	749, 797
AvaI	CYCGRG	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	727
BaeGI	GKGCMC	1 cut(s)	901
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BauI	CACGAG	2 cut(s)	581, 894
BbsI	GAAGAC	1 cut(s)	827
Bbv12I	GWGCWC	1 cut(s)	901
BbvI	GCAGC	3 cut(s)	424, 460, 554
BccI	CCATC	2 cut(s)	257, 322
BciT130I	CCWGG	1 cut(s)	347
BcoDI	GTCTC	4 cut(s)	189, 367, 638, 699
BisI	GCNGC	4 cut(s)	213, 438, 474, 543
BlsI	GCNGC	4 cut(s)	214, 439, 475, 544
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	727
BmeT110I	CYCGRG	1 cut(s)	216
BmgBI	CACGTC	1 cut(s)	479
BmgT120I	GGNCC	3 cut(s)	727, 784, 858
BmiI	GGNNCC	1 cut(s)	786
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	3 cut(s)	130, 211, 604
BoxI	GACNNNNGTC	1 cut(s)	662
BpiI	GAAGAC	1 cut(s)	827
BpmI	CTGGAG	2 cut(s)	329, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	793
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	754
BseLI	CCNNNNNNNGG	1 cut(s)	793
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	263, 845
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	812
BseSI	GKGCMC	1 cut(s)	901
BseXI	GCAGC	3 cut(s)	424, 460, 554
BsgI	GTGCAG	1 cut(s)	459
BshFI	GGCC	2 cut(s)	785, 860
BsiHKAI	GWGCWC	1 cut(s)	901
BsiHKCI	CYCGRG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	1 cut(s)	793
BsmAI	GTCTC	4 cut(s)	189, 367, 638, 699
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	2 cut(s)	785, 860
BsoBI	CYCGRG	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	901
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	6, 328
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	2 cut(s)	785, 860
BspCNI	CTCAG	2 cut(s)	264, 846
BspLI	GGNNCC	1 cut(s)	786
BspPI	GGATC	2 cut(s)	14, 323
BsrDI	GCAATG	1 cut(s)	207
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	2 cut(s)	6, 328
BssSI	CACGAG	2 cut(s)	581, 894
Bst2BI	CACGAG	2 cut(s)	581, 894
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	7 cut(s)	40, 107, 243, 598, 664, 851, 903
BstAUI	TGTACA	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	673, 862
BstDEI	CTNAG	2 cut(s)	272, 854
BstF5I	GGATG	1 cut(s)	754
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	9, 331
BstMAI	GTCTC	4 cut(s)	189, 367, 638, 699
BstMBI	GATC	2 cut(s)	6, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 443
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	2 cut(s)	160, 819
BstPAI	GACNNNNGTC	1 cut(s)	662
BstSCI	CCNGG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	901
BstV1I	GCAGC	3 cut(s)	424, 460, 554
BstV2I	GAAGAC	1 cut(s)	827
BsuRI	GGCC	2 cut(s)	785, 860
BtrI	CACGTC	1 cut(s)	479
BtsCI	GGATG	1 cut(s)	754
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	5 cut(s)	106, 239, 403, 488, 660
Cac8I	GCNNGC	2 cut(s)	673, 862
CaiI	CAGNNNCTG	2 cut(s)	105, 473
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	727, 784, 858
Csp6I	GTAC	3 cut(s)	244, 283, 389
CviAII	CATG	4 cut(s)	137, 157, 247, 816
CviQI	GTAC	3 cut(s)	244, 283, 389
DdeI	CTNAG	2 cut(s)	272, 854
DpnI	GATC	2 cut(s)	8, 330
DpnII	GATC	2 cut(s)	6, 328
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	727
Eco88I	CYCGRG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	784
EcoRII	CCWGG	1 cut(s)	345
FaeI	CATG	4 cut(s)	140, 160, 250, 819
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	4 cut(s)	136, 156, 246, 815
FauNDI	CATATG	1 cut(s)	649
Fnu4HI	GCNGC	4 cut(s)	213, 438, 474, 543
FokI	GGATG	1 cut(s)	761
Fsp4HI	GCNGC	4 cut(s)	213, 438, 474, 543
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	213, 438, 474, 543
GsuI	CTGGAG	2 cut(s)	329, 432
HaeIII	GGCC	2 cut(s)	785, 860
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	4 cut(s)	140, 160, 250, 819
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	3 cut(s)	319, 422, 571
HphI	GGTGA	2 cut(s)	749, 797
Hpy166II	GTNNAC	2 cut(s)	154, 899
Hpy188I	TCNGA	5 cut(s)	92, 469, 668, 748, 855
Hpy188III	TCNNGA	7 cut(s)	218, 260, 411, 530, 581, 602, 908
Hpy8I	GTNNAC	2 cut(s)	154, 899
HpyAV	CCTTC	4 cut(s)	70, 270, 599, 734
HpyCH4III	ACNGT	7 cut(s)	40, 107, 243, 598, 664, 851, 903
HpyCH4IV	ACGT	2 cut(s)	50, 478
HpyCH4V	TGCA	4 cut(s)	476, 557, 617, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 443
HpyF3I	CTNAG	2 cut(s)	272, 854
HpySE526I	ACGT	2 cut(s)	50, 478
Hsp92II	CATG	4 cut(s)	140, 160, 250, 819
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	2 cut(s)	6, 328
Lsp1109I	GCAGC	3 cut(s)	424, 460, 554
LweI	GCATC	3 cut(s)	130, 211, 604
MaeII	ACGT	2 cut(s)	50, 478
MaeIII	GTNAC	5 cut(s)	10, 46, 101, 489, 655
MalI	GATC	2 cut(s)	8, 330
MboI	GATC	2 cut(s)	6, 328
MboII	GAAGA	4 cut(s)	155, 319, 635, 827
MhlI	GDGCHC	1 cut(s)	901
MluCI	AATT	5 cut(s)	86, 146, 494, 702, 772
MlyI	GAGTC	3 cut(s)	313, 416, 565
MseI	TTAA	3 cut(s)	368, 705, 828
MslI	CAYNNNNRTG	3 cut(s)	481, 680, 843
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	221, 443
NdeI	CATATG	1 cut(s)	649
NdeII	GATC	2 cut(s)	6, 328
NlaIII	CATG	4 cut(s)	140, 160, 250, 819
NlaIV	GGNNCC	1 cut(s)	786
NmuCI	GTSAC	4 cut(s)	46, 101, 489, 655
NspI	RCATGY	2 cut(s)	160, 819
OliI	CACNNNNGTG	1 cut(s)	481
PaeR7I	CTCGAG	1 cut(s)	216
PkrI	GCNGC	4 cut(s)	214, 439, 475, 544
PleI	GAGTC	3 cut(s)	313, 416, 565
PpsI	GAGTC	3 cut(s)	313, 416, 565
PshAI	GACNNNNGTC	1 cut(s)	662
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	786
PspPI	GGNCC	3 cut(s)	727, 784, 858
PstNI	CAGNNNCTG	2 cut(s)	105, 473
RsaI	GTAC	3 cut(s)	245, 284, 390
RsaNI	GTAC	3 cut(s)	244, 283, 389
RseI	CAYNNNNRTG	3 cut(s)	481, 680, 843
SaqAI	TTAA	3 cut(s)	368, 705, 828
SatI	GCNGC	4 cut(s)	213, 438, 474, 543
Sau3AI	GATC	2 cut(s)	6, 328
Sau96I	GGNCC	3 cut(s)	727, 784, 858
SchI	GAGTC	3 cut(s)	313, 416, 565
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	901
SetI	ASST	9 cut(s)	17, 53, 281, 475, 481, 506, 745, 835, 880
SfaNI	GCATC	3 cut(s)	130, 211, 604
Sfr274I	CTCGAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	727
SlaI	CTCGAG	1 cut(s)	216
SmiMI	CAYNNNNRTG	3 cut(s)	481, 680, 843
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	5 cut(s)	86, 146, 494, 702, 772
SsiI	CCGC	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	7 cut(s)	40, 107, 243, 598, 664, 851, 903
TaiI	ACGT	2 cut(s)	53, 481
TaqI	TCGA	3 cut(s)	217, 317, 924
TasI	AATT	5 cut(s)	86, 146, 494, 702, 772
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	215
Tru1I	TTAA	3 cut(s)	368, 705, 828
Tru9I	TTAA	3 cut(s)	368, 705, 828
TscAI	CASTG	5 cut(s)	106, 246, 403, 488, 667
TseFI	GTSAC	4 cut(s)	46, 101, 489, 655
TseI	GCWGC	3 cut(s)	437, 473, 542
Tsp45I	GTSAC	4 cut(s)	46, 101, 489, 655
TspDTI	ATGAA	3 cut(s)	196, 765, 827
TspRI	CASTG	5 cut(s)	106, 246, 403, 488, 667
VneI	GTGCAC	1 cut(s)	897
VpaK11BI	GGWCC	1 cut(s)	727
XapI	RAATTY	2 cut(s)	146, 772
XceI	RCATGY	2 cut(s)	160, 819
XhoI	CTCGAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.