Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

26131883 .. 26133812

Gene Structure 1930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48733

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGAGACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCTGGAGGATTGGACTCATCACTCGTTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCACGTCAGTGGGGGTCACAATTACATACCTTTTGTGTTGGCTTGGAGGGAAAGGTTCTTGGTGTTAGGGTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

60

Amino Acids

6.39

Weight (kDa)

8.84

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	1 - 51	1.1e-13	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	179
AjiI	CACGTC	1 cut(s)	110
AleI	CACNNNNGTG	1 cut(s)	112
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	68, 104
BaeI	ACNNNNGTAYC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	55, 91
BisI	GCNGC	2 cut(s)	69, 105
BlsI	GCNGC	2 cut(s)	70, 106
BmgBI	CACGTC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	55, 91
BsgI	GTGCAG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	55, 91
BtrI	CACGTC	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	119
CaiI	CAGNNNCTG	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	20
CviJI	RGCY	4 cut(s)	77, 92, 104, 147
CviKI_1	RGCY	4 cut(s)	77, 92, 104, 147
CviQI	GTAC	1 cut(s)	20
FaiI	YATR	2 cut(s)	11, 132
Fnu4HI	GCNGC	2 cut(s)	69, 105
Fsp4HI	GCNGC	2 cut(s)	69, 105
GluI	GCNGC	2 cut(s)	69, 105
GsuI	CTGGAG	1 cut(s)	63
HinfI	GANTC	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	42
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	109
LpnPI	CCDG	1 cut(s)	27
Lsp1109I	GCAGC	2 cut(s)	55, 91
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	120
MluCI	AATT	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	2 cut(s)	38, 145
MslI	CAYNNNNRTG	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	120
OliI	CACNNNNGTG	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	70, 106
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	104
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	112
SatI	GCNGC	2 cut(s)	69, 105
SchI	GAGTC	1 cut(s)	47
SetI	ASST	4 cut(s)	106, 112, 137, 162
SgeI	CNNG	6 cut(s)	54, 74, 90, 120, 160, 176
SmiMI	CAYNNNNRTG	1 cut(s)	112
Sse9I	AATT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	112
TasI	AATT	1 cut(s)	125
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	120
TseI	GCWGC	2 cut(s)	68, 104
Tsp45I	GTSAC	1 cut(s)	120
TspRI	CASTG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.