RLG00000018088

Asparagine synthetase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
25187619 .. 25189678
2060 bp
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UTR
Exon/CDS
Intron
RLM00000018088

Sequence Viewer

Length: 321 bp
ATGGCCAAAATCAAATTTAGAAGCAGTGTGTTACCATTAGAACTGAGACTGTTGGTTGCGGCATCAAGAGAAGTTGCAGATTATCTTGGTACTCATCATCACGAGTTTCACTTTACTGTTCAGGCTGTGTTAAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTCATCCGGAGGGTTGGACTCATCACTCGTTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCAAGTCAGTGGGGGTCACAGTTACAGACCTTTTGCGTTGGCTTGGAGGTAACTGTACTTATCATTTTCGACGACCAAATCTGA

Protein Analysis

107

Amino Acids

11.62

Weight (kDa)

6.39

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asn_synthase PF00733 41 - 94 1e-11 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 173
AciI CCGC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 14
AfaI GTAC 3 cut(s) 91, 153, 294
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 2 cut(s) 40, 130
AlwNI CAGNNNCTG 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 173
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 200, 236
ApoI RAATTY 1 cut(s) 14
BaeI ACNNNNGTAYC 2 cut(s) 135, 168
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 101
BbvI GCAGC 2 cut(s) 187, 223
BcoDI GTCTC 2 cut(s) 40, 130
BisI GCNGC 3 cut(s) 60, 201, 237
BlsI GCNGC 3 cut(s) 61, 202, 238
BmsI GCATC 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 173
BseAI TCCGGA 1 cut(s) 173
BseGI GGATG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 187, 223
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 174
BsmAI GTCTC 2 cut(s) 40, 130
BsnI GGCC 1 cut(s) 5
Bsp13I TCCGGA 1 cut(s) 173
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 36
BspEI TCCGGA 1 cut(s) 173
BssSI CACGAG 1 cut(s) 101
Bst2BI CACGAG 1 cut(s) 101
Bst4CI ACNGT 4 cut(s) 51, 118, 258, 292
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 170
BstMAI GTCTC 2 cut(s) 40, 130
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstV1I GCAGC 2 cut(s) 187, 223
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 2 cut(s) 31, 251
CaiI CAGNNNCTG 1 cut(s) 236
Csp6I GTAC 3 cut(s) 90, 152, 293
CviJI RGCY 6 cut(s) 5, 125, 209, 224, 236, 279
CviKI_1 RGCY 6 cut(s) 5, 125, 209, 224, 236, 279
CviQI GTAC 3 cut(s) 90, 152, 293
DdeI CTNAG 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 3
FaiI YATR 1 cut(s) 143
Fnu4HI GCNGC 3 cut(s) 60, 201, 237
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 3 cut(s) 60, 201, 237
GluI GCNGC 3 cut(s) 60, 201, 237
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 174
HinfI GANTC 1 cut(s) 185
HpaII CCGG 1 cut(s) 174
Hpy188I TCNGA 2 cut(s) 232, 320
Hpy188III TCNNGA 3 cut(s) 66, 101, 174
Hpy99I CGWCG 1 cut(s) 311
HpyCH4III ACNGT 4 cut(s) 51, 118, 258, 292
HpyCH4V TGCA 2 cut(s) 77, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 44
Kpn2I TCCGGA 1 cut(s) 173
LpnPI CCDG 2 cut(s) 107, 187
Lsp1109I GCAGC 2 cut(s) 187, 223
LweI GCATC 1 cut(s) 71
MaeIII GTNAC 4 cut(s) 30, 252, 258, 286
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 14
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 2 cut(s) 170, 277
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 173
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 252
PkrI GCNGC 3 cut(s) 61, 202, 238
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 236
RsaI GTAC 3 cut(s) 91, 153, 294
RsaNI GTAC 3 cut(s) 90, 152, 293
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 3 cut(s) 60, 201, 237
SchI GAGTC 1 cut(s) 179
SetI ASST 3 cut(s) 238, 269, 288
SfaNI GCATC 1 cut(s) 71
Sse9I AATT 1 cut(s) 14
SsiI CCGC 1 cut(s) 59
TaaI ACNGT 4 cut(s) 51, 118, 258, 292
TaqI TCGA 1 cut(s) 306
TasI AATT 1 cut(s) 14
TatI WGTACW 1 cut(s) 292
TauI GCSGC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 2 cut(s) 31, 251
TseFI GTSAC 1 cut(s) 252
TseI GCWGC 2 cut(s) 200, 236
Tsp45I GTSAC 1 cut(s) 252
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 2 cut(s) 31, 251
XapI RAATTY 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.