Rw2G019100

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
25037306 .. 25041364
4059 bp
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UTR
Exon/CDS
Intron
Rw2G019100.1

Sequence Viewer

Length: 726 bp
ATGGGGATTGTTACCTCCGTCATTGTCAAGGTTAATGGTGAGATATATAACCACAAGCAATTGAGAGAAACATTGAAGGGTCATCAATTCCAAACTGGCAGTGATTGTGAAGTGATAGCGCATCTTTATGAGGAACATGGGGAAGAATTTGTTGACATGCTGGACGGGATGTTCTCCTTTGTCCTCCTTGATACAAGAGACAACACCTTCATGGCAGCTCGAGACGCTATTGGCATAACCCCACTGTACATGGGCTGGGGTCTTGATGGAGGGCTGAGAAGATGGTACAATCCACAATGGTTTTTGGAGAAGATACCATCGATTCCTTATGATCCCATTGTTTTACGCGAGGCTTTTGAGAAGGCTGTGTTAAGGAGACTTATGACAGATGTACCATTTGGTGTTCTTTTGTCCGGAGGGTTGGACTCACCACTCGGTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCAAGTCAGTGGGGGTCACAGTTACATACCTTTTGCGTTGGCTTGGAGACATGTTTTCTCTATGTTTACATGCTTTGCATTTTCAGTCTTCAAGGTTCTCCAGATTTGAAAGCAGCAAGAGAAGTTGCAGATTATCTTGGAACTCATCATCACGAGTTTCACTTTACTGTTCGTGTAATATATAAGGCTCAAGGGTGGAAATTAGGTTTTCTTAGATTTAGAATTCAGGTAATCCTTATGCAGTTTTAA

Protein Analysis

241

Amino Acids

27.45

Weight (kDa)

6.13

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATase_7 PF13537 6 - 87 3.3e-29 Glutamine amidotransferase domain
GATase_6 PF13522 7 - 86 1.2e-22 Glutamine amidotransferase domain
Asn_synthase PF00733 115 - 217 8.4e-21 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 348
AccIII TCCGGA 1 cut(s) 413
AclWI GGATC 1 cut(s) 326
AcsI RAATTY 2 cut(s) 146, 699
AdeI CACNNNGTG 1 cut(s) 437
AfaI GTAC 3 cut(s) 248, 287, 393
AflIII ACRYGT 1 cut(s) 527
AgsI TTSAA 3 cut(s) 76, 569, 586
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 2 cut(s) 218, 476
AluI AGCT 2 cut(s) 218, 476
Alw26I GTCTC 4 cut(s) 192, 216, 370, 518
AlwI GGATC 1 cut(s) 326
AlwNI CAGNNNCTG 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 219
Aor13HI TCCGGA 1 cut(s) 413
ApeKI GCWGC 4 cut(s) 215, 440, 476, 590
ApoI RAATTY 2 cut(s) 146, 699
AspLEI GCGC 1 cut(s) 121
AsuHPI GGTGA 2 cut(s) 50, 420
AvaI CYCGRG 1 cut(s) 219
BaeI ACNNNNGTAYC 2 cut(s) 375, 408
BauI CACGAG 1 cut(s) 629
BbsI GAAGAC 1 cut(s) 557
BbvI GCAGC 4 cut(s) 227, 427, 463, 602
BccI CCATC 3 cut(s) 260, 276, 325
BcoDI GTCTC 4 cut(s) 192, 216, 370, 518
BisI GCNGC 4 cut(s) 216, 441, 477, 591
BlsI GCNGC 4 cut(s) 217, 442, 478, 592
BmeT110I CYCGRG 1 cut(s) 219
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 557
BpmI CTGGAG 1 cut(s) 561
BpuEI CTTGAG 1 cut(s) 651
Bsa29I ATCGAT 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 100
BseAI TCCGGA 1 cut(s) 413
BseCI ATCGAT 1 cut(s) 320
BseGI GGATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 100
BseXI GCAGC 4 cut(s) 227, 427, 463, 602
BseYI CCCAGC 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 348
BshVI ATCGAT 1 cut(s) 320
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 1 cut(s) 414
BsmAI GTCTC 4 cut(s) 192, 216, 370, 518
BsmBI CGTCTC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 219
Bsp13I TCCGGA 1 cut(s) 413
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 1 cut(s) 331
BspCNI CTCAG 1 cut(s) 267
BspDI ATCGAT 1 cut(s) 320
BspEI TCCGGA 1 cut(s) 413
BspFNI CGCG 1 cut(s) 348
BspPI GGATC 1 cut(s) 326
BsrGI TGTACA 1 cut(s) 246
BsrI ACTGG 1 cut(s) 100
BssMI GATC 1 cut(s) 331
BssSI CACGAG 1 cut(s) 629
Bst2BI CACGAG 1 cut(s) 629
Bst4CI ACNGT 3 cut(s) 246, 498, 646
BstAUI TGTACA 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 275, 689
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 348
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 4 cut(s) 192, 216, 370, 518
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 2 cut(s) 224, 446
BstNSI RCATGY 3 cut(s) 160, 531, 550
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 4 cut(s) 227, 427, 463, 602
BstV2I GAAGAC 1 cut(s) 557
Bsu15I ATCGAT 1 cut(s) 320
BsuTUI ATCGAT 1 cut(s) 320
BtsCI GGATG 1 cut(s) 174
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 3 cut(s) 106, 242, 491
CaiI CAGNNNCTG 1 cut(s) 476
CfoI GCGC 1 cut(s) 121
ClaI ATCGAT 1 cut(s) 320
CseI GACGC 1 cut(s) 233
Csp6I GTAC 3 cut(s) 247, 286, 392
CviAII CATG 6 cut(s) 137, 157, 211, 250, 528, 547
CviQI GTAC 3 cut(s) 247, 286, 392
DdeI CTNAG 2 cut(s) 275, 689
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
DraIII CACNNNGTG 1 cut(s) 437
Eco88I CYCGRG 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 699
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 6 cut(s) 140, 160, 214, 253, 531, 550
FatI CATG 6 cut(s) 136, 156, 210, 249, 527, 546
Fnu4HI GCNGC 4 cut(s) 216, 441, 477, 591
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 4 cut(s) 216, 441, 477, 591
GlaI GCGC 1 cut(s) 120
GluI GCNGC 4 cut(s) 216, 441, 477, 591
GsaI CCCAGC 1 cut(s) 259
GsuI CTGGAG 1 cut(s) 561
HapII CCGG 1 cut(s) 414
HgaI GACGC 1 cut(s) 233
HhaI GCGC 1 cut(s) 121
Hin1II CATG 6 cut(s) 140, 160, 214, 253, 531, 550
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 322, 425
HpaII CCGG 1 cut(s) 414
HphI GGTGA 2 cut(s) 50, 420
Hpy166II GTNNAC 2 cut(s) 154, 544
Hpy188I TCNGA 1 cut(s) 472
Hpy188III TCNNGA 5 cut(s) 221, 263, 414, 578, 629
Hpy8I GTNNAC 2 cut(s) 154, 544
HpyAV CCTTC 3 cut(s) 70, 217, 355
HpyCH4III ACNGT 3 cut(s) 246, 498, 646
HpyCH4V TGCA 4 cut(s) 479, 555, 605, 718
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 446
HpyF3I CTNAG 2 cut(s) 275, 689
Hsp92II CATG 6 cut(s) 140, 160, 214, 253, 531, 550
HspAI GCGC 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 413
Kzo9I GATC 1 cut(s) 331
LpnPI CCDG 6 cut(s) 81, 146, 241, 427, 591, 689
Lsp1109I GCAGC 4 cut(s) 227, 427, 463, 602
LweI GCATC 1 cut(s) 130
MaeIII GTNAC 3 cut(s) 10, 492, 498
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 4 cut(s) 155, 291, 322, 557
MfeI CAATTG 1 cut(s) 59
MluCI AATT 5 cut(s) 59, 86, 146, 677, 699
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 6 cut(s) 25, 124, 194, 263, 343, 410
MroI TCCGGA 1 cut(s) 413
MseI TTAA 3 cut(s) 33, 371, 724
MslI CAYNNNNRTG 2 cut(s) 126, 209
MspI CCGG 1 cut(s) 414
MunI CAATTG 1 cut(s) 59
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 2 cut(s) 224, 446
NdeII GATC 1 cut(s) 331
NlaIII CATG 6 cut(s) 140, 160, 214, 253, 531, 550
NmuCI GTSAC 1 cut(s) 492
NspI RCATGY 3 cut(s) 160, 531, 550
PaeR7I CTCGAG 1 cut(s) 219
PciI ACATGT 1 cut(s) 527
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 4 cut(s) 217, 442, 478, 592
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PscI ACATGT 1 cut(s) 527
PspFI CCCAGC 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 476
RsaI GTAC 3 cut(s) 248, 287, 393
RsaNI GTAC 3 cut(s) 247, 286, 392
RseI CAYNNNNRTG 2 cut(s) 126, 209
SaqAI TTAA 3 cut(s) 33, 371, 724
SatI GCNGC 4 cut(s) 216, 441, 477, 591
Sau3AI GATC 1 cut(s) 331
SchI GAGTC 1 cut(s) 419
SetI ASST 9 cut(s) 17, 33, 209, 220, 478, 509, 574, 685, 708
SfaNI GCATC 1 cut(s) 130
Sfr274I CTCGAG 1 cut(s) 219
SlaI CTCGAG 1 cut(s) 219
SmiMI CAYNNNNRTG 2 cut(s) 126, 209
SmlI CTYRAG 2 cut(s) 219, 666
SmoI CTYRAG 2 cut(s) 219, 666
Sse9I AATT 5 cut(s) 59, 86, 146, 677, 699
TaaI ACNGT 3 cut(s) 246, 498, 646
TaqI TCGA 2 cut(s) 220, 320
TasI AATT 5 cut(s) 59, 86, 146, 677, 699
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 3 cut(s) 33, 371, 724
Tru9I TTAA 3 cut(s) 33, 371, 724
TscAI CASTG 3 cut(s) 106, 249, 491
TseFI GTSAC 1 cut(s) 492
TseI GCWGC 4 cut(s) 215, 440, 476, 590
Tsp45I GTSAC 1 cut(s) 492
TspDTI ATGAA 1 cut(s) 199
TspGWI ACGGA 1 cut(s) 7
TspRI CASTG 3 cut(s) 106, 249, 491
XapI RAATTY 2 cut(s) 146, 699
XceI RCATGY 3 cut(s) 160, 531, 550
XhoI CTCGAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.