Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

26133814 .. 26136879

Gene Structure 3066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48734

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCAAACTTTTGCACCGGGAAAGGGTTCTCCAGATTTGAAAGCAGCAAGAGAAGTTGCAGATTATCTTGGAACTCATCATCACGAGTTGCACTTTATTGTTCGGGTAATTTATAAGGGATGTAAGAAGAATACTTTTACTAAGGCTCAAGGCATAGATGCACTTGAAGAAGTTATCTACCATATTGAGACATATGTGACCACTGTCAGAGCCAGCACTCCAATGTTTCTTATGTCTCGTAAAATTAAATCTCTAGGAGTAAAAATGGTCCTTTCTGGTGAAGGTTCGGATGAAATCTTTGGTGGCTACTTGTATTTCAACAAGGCACCAAACAAGGAGAAGTTTCACCAAGAAACATGCCAGAAGATTAAAGGTCTTCATCTGTATGACTGTCTGAGGGCCAACAAATCGGCATCAGCTGGGGGTGTTGAGGCTCGTGTACCGTTTCTTGACAAAGAATTTGTCAAGACTGCTATGGACATTGATCCAGAATGGAAAATGATCAGGCCTGATCTTGGAAGAATTGAGAAGTGGGTCTTACGCAAAGCATTTGATGATGATCAGAAGCCATATTTACCAAAGCACATCTTGTACAGGCAGAAGGAGCAGTTTAGTGATGGTGTCGGTTACAGCTGGATTGAGGGGTTGAAAGATCATGCAAACAAACAAGTAACAGATTCGATGCTGATGAACGCAAGCTTTGTCTACCCTGAAAACACTCCGACTACAAAAGAAGGATACTACTATAGGACTATCTTTGAGAAATATTTTCCAAAGAATGCTGCGAGATCGACAGTTCCTGGTGGTCCAAGTGTGGCATGCAGCACAGCAAAAGCTGTGGAGTGGGATGCAGAATGGTCCAAAAACCCCGATTCATCTGGTCGTGCTGCACTTGGTATACATGCAGCTGTGTATGAGGAATCCAAAGATGTAAAGACTGGAAGTCTTGTGAGTGACTCTCCACAGAAACTTGTAAAAGCGGTTGCAGAGAAAGTGGCTGCAGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

336

Amino Acids

37.69

Weight (kDa)

8.85

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	6 - 111	3.3e-23	Asparagine synthase
Asn_synthase	PF00733	109 - 262	3.6e-32	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	325
AccI	GTMKAC	2 cut(s)	705, 898
AciI	CCGC	1 cut(s)	980
AclWI	GGATC	1 cut(s)	479
AcsI	RAATTY	1 cut(s)	458
AfaI	GTAC	2 cut(s)	441, 593
AfiI	CCNNNNNNNGG	2 cut(s)	23, 515
AgsI	TTSAA	4 cut(s)	40, 167, 319, 649
AhdI	GACNNNNNGTC	1 cut(s)	942
AjnI	CCWGG	1 cut(s)	799
AluBI	AGCT	5 cut(s)	419, 633, 699, 836, 908
AluI	AGCT	5 cut(s)	419, 633, 699, 836, 908
Alw26I	GTCTC	2 cut(s)	182, 240
AlwI	GGATC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	800
AoxI	GGCC	2 cut(s)	399, 506
ApeKI	GCWGC	6 cut(s)	44, 782, 822, 887, 905, 998
ApoI	RAATTY	1 cut(s)	458
ArsI	GACNNNNNNTTYG	4 cut(s)	443, 447, 475, 479
Asp700I	GAANNNNTTC	1 cut(s)	25
AspS9I	GGNCC	4 cut(s)	268, 399, 806, 858
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	2 cut(s)	290, 338
AvaII	GGWCC	3 cut(s)	268, 806, 858
BanI	GGYRCC	1 cut(s)	325
BauI	CACGAG	2 cut(s)	83, 435
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	6 cut(s)	56, 769, 834, 874, 917, 985
BccI	CCATC	1 cut(s)	611
BciT130I	CCWGG	1 cut(s)	801
BciVI	GTATCC	1 cut(s)	731
BclI	TGATCA	2 cut(s)	501, 559
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	2 cut(s)	182, 240
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	2 cut(s)	745, 999
BfuI	GTATCC	1 cut(s)	731
BisI	GCNGC	6 cut(s)	45, 783, 823, 888, 906, 999
BlsI	GCNGC	6 cut(s)	46, 784, 824, 889, 907, 1000
Bme1390I	CCNGG	2 cut(s)	18, 801
Bme18I	GGWCC	3 cut(s)	268, 806, 858
BmeRI	GACNNNNNGTC	1 cut(s)	942
BmgT120I	GGNCC	4 cut(s)	268, 399, 806, 858
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	2 cut(s)	18, 801
BmsI	GCATC	4 cut(s)	148, 422, 672, 838
BoxI	GACNNNNGTC	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	368
BplI	GAGNNNNNCTC	2 cut(s)	943, 975
BpmI	CTGGAG	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 515
Bse1I	ACTGG	1 cut(s)	943
Bse8I	GATNNNNATC	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	801
BseGI	GGATG	3 cut(s)	125, 295, 853
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	23, 515
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	1 cut(s)	943
BseXI	GCAGC	6 cut(s)	56, 769, 834, 874, 917, 985
BseYI	CCCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	873
BshFI	GGCC	2 cut(s)	401, 508
BshNI	GGYRCC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	23, 515
BsmAI	GTCTC	2 cut(s)	182, 240
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	2 cut(s)	401, 508
Bsp1407I	TGTACA	1 cut(s)	591
Bsp143I	GATC	6 cut(s)	484, 501, 511, 559, 652, 788
BspACI	CCGC	1 cut(s)	980
BspANI	GGCC	2 cut(s)	401, 508
BspCNI	CTCAG	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	327
BspMAI	CTGCAG	1 cut(s)	1003
BspPI	GGATC	1 cut(s)	479
BspT107I	GGYRCC	1 cut(s)	325
BsrGI	TGTACA	1 cut(s)	591
BsrI	ACTGG	1 cut(s)	943
BssMI	GATC	6 cut(s)	484, 501, 511, 559, 652, 788
BssNAI	GTATAC	1 cut(s)	899
BssSI	CACGAG	2 cut(s)	83, 435
Bst1107I	GTATAC	1 cut(s)	899
Bst2BI	CACGAG	2 cut(s)	83, 435
Bst2UI	CCWGG	1 cut(s)	801
Bst4CI	ACNGT	4 cut(s)	205, 392, 444, 796
BstAUI	TGTACA	1 cut(s)	591
BstC8I	GCNNGC	3 cut(s)	214, 697, 820
BstDEI	CTNAG	2 cut(s)	141, 395
BstF5I	GGATG	3 cut(s)	125, 295, 853
BstKTI	GATC	6 cut(s)	487, 504, 514, 562, 655, 791
BstMAI	GTCTC	2 cut(s)	182, 240
BstMBI	GATC	6 cut(s)	484, 501, 511, 559, 652, 788
BstMWI	GCNNNNNNNGC	1 cut(s)	604
BstNI	CCWGG	1 cut(s)	801
BstNSI	RCATGY	3 cut(s)	360, 822, 905
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	16, 799
BstSFI	CTRYAG	2 cut(s)	745, 999
BstV1I	GCAGC	6 cut(s)	56, 769, 834, 874, 917, 985
BstV2I	GAAGAC	1 cut(s)	368
BstZ17I	GTATAC	1 cut(s)	899
BsuI	GTATCC	1 cut(s)	731
BsuRI	GGCC	2 cut(s)	401, 508
BtsCI	GGATG	3 cut(s)	125, 295, 853
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	3 cut(s)	214, 697, 820
CaiI	CAGNNNCTG	1 cut(s)	800
Cfr13I	GGNCC	4 cut(s)	268, 399, 806, 858
Csp6I	GTAC	2 cut(s)	440, 592
CspCI	CAANNNNNGTGG	2 cut(s)	819, 854
CviAII	CATG	4 cut(s)	357, 656, 819, 902
CviQI	GTAC	2 cut(s)	440, 592
DdeI	CTNAG	2 cut(s)	141, 395
DpnI	GATC	6 cut(s)	486, 503, 513, 561, 654, 790
DpnII	GATC	6 cut(s)	484, 501, 511, 559, 652, 788
DriI	GACNNNNNGTC	1 cut(s)	942
Eam1105I	GACNNNNNGTC	1 cut(s)	942
Eco147I	AGGCCT	1 cut(s)	508
Eco47I	GGWCC	3 cut(s)	268, 806, 858
EcoRII	CCWGG	1 cut(s)	799
FaeI	CATG	4 cut(s)	360, 659, 822, 905
FalI	AAGNNNNNCTT	4 cut(s)	521, 553, 572, 604
FatI	CATG	4 cut(s)	356, 655, 818, 901
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	2 cut(s)	501, 559
FblI	GTMKAC	2 cut(s)	705, 898
Fnu4HI	GCNGC	6 cut(s)	45, 783, 823, 888, 906, 999
FokI	GGATG	3 cut(s)	132, 302, 860
Fsp4HI	GCNGC	6 cut(s)	45, 783, 823, 888, 906, 999
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	6 cut(s)	45, 783, 823, 888, 906, 999
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	401, 508
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	4 cut(s)	360, 659, 822, 905
HindIII	AAGCTT	1 cut(s)	697
HinfI	GANTC	4 cut(s)	677, 872, 920, 956
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	2 cut(s)	290, 338
Hpy166II	GTNNAC	3 cut(s)	440, 706, 899
Hpy188I	TCNGA	5 cut(s)	209, 289, 396, 564, 723
Hpy188III	TCNNGA	5 cut(s)	32, 83, 449, 466, 488
Hpy8I	GTNNAC	3 cut(s)	440, 706, 899
HpyAV	CCTTC	3 cut(s)	275, 595, 728
HpyCH4III	ACNGT	4 cut(s)	205, 392, 444, 796
HpyF10VI	GCNNNNNNNGC	1 cut(s)	604
HpyF3I	CTNAG	2 cut(s)	141, 395
Hsp92II	CATG	4 cut(s)	360, 659, 822, 905
Ksp22I	TGATCA	2 cut(s)	501, 559
Kzo9I	GATC	6 cut(s)	484, 501, 511, 559, 652, 788
LmnI	GCTCC	1 cut(s)	604
Lsp1109I	GCAGC	6 cut(s)	56, 769, 834, 874, 917, 985
LweI	GCATC	4 cut(s)	148, 422, 672, 838
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	4 cut(s)	196, 626, 670, 953
MalI	GATC	6 cut(s)	486, 503, 513, 561, 654, 790
MboI	GATC	6 cut(s)	484, 501, 511, 559, 652, 788
MboII	GAAGA	5 cut(s)	139, 179, 368, 376, 531
MluCI	AATT	4 cut(s)	108, 243, 458, 522
MlyI	GAGTC	1 cut(s)	950
MmeI	TCCRAC	1 cut(s)	746
MnlI	CCTC	4 cut(s)	390, 424, 634, 910
MroXI	GAANNNNTTC	1 cut(s)	25
MseI	TTAA	2 cut(s)	246, 369
MslI	CAYNNNNRTG	2 cut(s)	221, 384
MspA1I	CMGCKG	3 cut(s)	419, 633, 908
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	2 cut(s)	18, 801
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	801
MwoI	GCNNNNNNNGC	1 cut(s)	604
NciI	CCSGG	1 cut(s)	18
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	6 cut(s)	484, 501, 511, 559, 652, 788
NlaIII	CATG	4 cut(s)	360, 659, 822, 905
NlaIV	GGNNCC	1 cut(s)	327
NmuCI	GTSAC	2 cut(s)	196, 953
NspI	RCATGY	3 cut(s)	360, 822, 905
PaeI	GCATGC	1 cut(s)	822
PceI	AGGCCT	1 cut(s)	508
PctI	GAATGC	1 cut(s)	784
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	3 cut(s)	677, 872, 920
PkrI	GCNGC	6 cut(s)	46, 784, 824, 889, 907, 1000
PleI	GAGTC	1 cut(s)	950
PpsI	GAGTC	1 cut(s)	950
PshAI	GACNNNNGTC	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	799
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	799
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	4 cut(s)	268, 399, 806, 858
PstI	CTGCAG	1 cut(s)	1003
PstNI	CAGNNNCTG	1 cut(s)	800
PvuII	CAGCTG	3 cut(s)	419, 633, 908
RsaI	GTAC	2 cut(s)	441, 593
RsaNI	GTAC	2 cut(s)	440, 592
RseI	CAYNNNNRTG	2 cut(s)	221, 384
SaqAI	TTAA	2 cut(s)	246, 369
SatI	GCNGC	6 cut(s)	45, 783, 823, 888, 906, 999
Sau3AI	GATC	6 cut(s)	484, 501, 511, 559, 652, 788
Sau96I	GGNCC	4 cut(s)	268, 399, 806, 858
SchI	GAGTC	1 cut(s)	950
ScrFI	CCNGG	2 cut(s)	18, 801
SetI	ASST	7 cut(s)	286, 376, 421, 635, 701, 838, 910
SfaNI	GCATC	4 cut(s)	148, 422, 672, 838
SfcI	CTRYAG	2 cut(s)	745, 999
SinI	GGWCC	3 cut(s)	268, 806, 858
SmiMI	CAYNNNNRTG	2 cut(s)	221, 384
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
SphI	GCATGC	1 cut(s)	822
Sse9I	AATT	4 cut(s)	108, 243, 458, 522
SseBI	AGGCCT	1 cut(s)	508
SsiI	CCGC	1 cut(s)	980
SspI	AATATT	1 cut(s)	767
SspMI	CTAG	1 cut(s)	254
StuI	AGGCCT	1 cut(s)	508
StyD4I	CCNGG	2 cut(s)	16, 799
TaaI	ACNGT	4 cut(s)	205, 392, 444, 796
TaqI	TCGA	2 cut(s)	680, 791
TasI	AATT	4 cut(s)	108, 243, 458, 522
TatI	WGTACW	1 cut(s)	591
TfiI	GAWTC	3 cut(s)	677, 872, 920
Tru1I	TTAA	2 cut(s)	246, 369
Tru9I	TTAA	2 cut(s)	246, 369
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	2 cut(s)	196, 953
TseI	GCWGC	6 cut(s)	44, 782, 822, 887, 905, 998
Tsp45I	GTSAC	2 cut(s)	196, 953
TspDTI	ATGAA	4 cut(s)	306, 368, 704, 864
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	3 cut(s)	268, 806, 858
XapI	RAATTY	1 cut(s)	458
XceI	RCATGY	3 cut(s)	360, 822, 905
XmiI	GTMKAC	2 cut(s)	705, 898
XmnI	GAANNNNTTC	1 cut(s)	25
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.