Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

23828666 .. 23837703

Gene Structure 9038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G018450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCTCATTTTTGGACCAAGAATGTGTATCAAGCTAGTATACAACAGCGATTGGCTATTCTGGACCCTGCCTCAGGAGATCAGCCTCTCTACAACGAGGACAAGACCGTCATTGTCACGGATCAATTTGGAGGGCTGAGAAGGTGGTACAATCCACAATGCTTTCTGGAGAAGATACCATCGACTCCTTATGATCCCATTGTTTTACGCGAGGCTTTTGAGAAGGAGCACCCAAGAAAGCACACCATGCAGCTTGATAAGGAACTCGAACACTGTGGGAACCCCTGGTTCTACAACAAGGCGATCAAGTTCTATTGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

107

Amino Acids

12.73

Weight (kDa)

7.73

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	40
AccII	CGCG	1 cut(s)	210
AclWI	GGATC	2 cut(s)	129, 188
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	2 cut(s)	35, 253
AluI	AGCT	2 cut(s)	35, 253
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	129, 188
ApeKI	GCWGC	1 cut(s)	250
AspS9I	GGNCC	2 cut(s)	15, 64
AvaII	GGWCC	2 cut(s)	15, 64
AxyI	CCTNAGG	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	286
BfaI	CTAG	1 cut(s)	36
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	2 cut(s)	15, 64
BmgT120I	GGNCC	2 cut(s)	15, 64
BmiI	GGNNCC	2 cut(s)	66, 281
BmrFI	CCNGG	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse21I	CCTNAGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	87, 128
BseXI	GCAGC	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	79, 121, 193, 303
BspCNI	CTCAG	2 cut(s)	86, 129
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	66, 281
BspPI	GGATC	2 cut(s)	129, 188
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	4 cut(s)	79, 121, 193, 303
BssNAI	GTATAC	1 cut(s)	41
Bst1107I	GTATAC	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	2 cut(s)	109, 275
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	73, 137
BstENI	CCTNNNNNAGG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	4 cut(s)	82, 124, 196, 306
BstMBI	GATC	4 cut(s)	79, 121, 193, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	284
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	262
BstZ17I	GTATAC	1 cut(s)	41
Bsu36I	CCTNAGG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	15, 64
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	7 cut(s)	5, 35, 56, 85, 136, 215, 253
CviKI_1	RGCY	7 cut(s)	5, 35, 56, 85, 136, 215, 253
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	73, 137
DpnI	GATC	4 cut(s)	81, 123, 195, 305
DpnII	GATC	4 cut(s)	79, 121, 193, 303
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	15, 64
Eco81I	CCTNAGG	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	284
FaeI	CATG	1 cut(s)	250
FaiI	YATR	3 cut(s)	41, 192, 248
FatI	CATG	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	1 cut(s)	251
GsuI	CTGGAG	1 cut(s)	188
Hin1II	CATG	1 cut(s)	250
HinfI	GANTC	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188III	TCNNGA	3 cut(s)	62, 75, 167
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	135, 217
HpyCH4III	ACNGT	2 cut(s)	109, 275
HpyCH4V	TGCA	2 cut(s)	250, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	2 cut(s)	73, 137
Hsp92II	CATG	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	79, 121, 193, 303
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	6 cut(s)	47, 60, 81, 152, 271, 298
Lsp1109I	GCAGC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	4 cut(s)	81, 123, 195, 305
MboI	GATC	4 cut(s)	79, 121, 193, 303
MboII	GAAGA	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	178
MnlI	CCTC	5 cut(s)	82, 91, 96, 125, 205
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	4 cut(s)	79, 121, 193, 303
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	2 cut(s)	66, 281
NmuCI	GTSAC	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	252
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	2 cut(s)	66, 281
PspPI	GGNCC	2 cut(s)	15, 64
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	4 cut(s)	79, 121, 193, 303
Sau96I	GGNCC	2 cut(s)	15, 64
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	3 cut(s)	37, 146, 255
SinI	GGWCC	2 cut(s)	15, 64
Sse9I	AATT	1 cut(s)	125
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	2 cut(s)	109, 275
TaqI	TCGA	2 cut(s)	182, 267
TasI	AATT	1 cut(s)	125
TscAI	CASTG	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	15, 64
XagI	CCTNNNNNAGG	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	40
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.