Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004283.1

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

36113 .. 41162

Gene Structure 5050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004283.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgttctacaaattccagcgactctggttgaaatcggtgttgtatgaggtatggaaaacgatcctcttgtcgtgctcgacgtttttcgataattggttttcaaatttggttaagtttggaaaaatgggagggctgagaaggtggtacaatccagaatggtttttggagaagataccatcatctccttatgatcccattgttttacgcgaggcttttgagaagggttctccagatttaaaagcagcaagagaagttgctgattatcttggaactcatcatcacgagtttcactttactgttcaggaaggcatagatgcacttgaagaagttgtctaccatattgagacatatgatgtgaccactgtcagagccagcactccaatgtttcttatgtctcgtaagataaaatctctgggagtaaaaatggtcctttctggtgaaggttcagatgaaatctttggtggctacttgtatttccacaaggcaccaaacaaggaggagtttcaccaagaaacatgccagaagataaggcctgatcttgggagaattgagaagtgggtcttgcgcaaagcatttgatgatgatcagaagccatatttaccaaagcacatcttgtacaggcagaaggagcagtttagtgatggtgtcggttacagttggattgacggcttgaaagatcatgccaacaaacaagtaacagattcaatgctgatgaacgcaagctttgtctaccctgaaaacactccgactacaaaagaaggatactactataggactatctttgagaaatattttccaaagaatgctgtgagatcgacagttcccggtgttccaagtgcggcatgcagcacagcaaaagctgtggagtgggatgcggaatggtccaagaaccctgatccatctggtcatgctgcacttggtatacatgcagctgcgtatgaggaatccaaagatgtgaagactggaagtcttgtgagtgactctccacagaaacttgtaaaaggggttgcagagaaagtggccgcagtagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

344

Amino Acids

39.42

Weight (kDa)

6.84

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	484
AccI	GTMKAC	3 cut(s)	333, 729, 922
AccII	CGCG	1 cut(s)	207
AciI	CCGC	3 cut(s)	839, 875, 1023
AclWI	GGATC	3 cut(s)	55, 185, 890
AcoI	YGGCCR	1 cut(s)	1020
AcsI	RAATTY	2 cut(s)	11, 103
AfaI	GTAC	2 cut(s)	146, 617
AfiI	CCNNNNNNNGG	1 cut(s)	539
AgsI	TTSAA	5 cut(s)	31, 102, 323, 673, 705
AhdI	GACNNNNNGTC	1 cut(s)	966
AluBI	AGCT	3 cut(s)	723, 860, 932
AluI	AGCT	3 cut(s)	723, 860, 932
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	2 cut(s)	338, 399
AlwI	GGATC	3 cut(s)	55, 185, 890
AoxI	GGCC	2 cut(s)	530, 1020
ApeKI	GCWGC	5 cut(s)	242, 846, 911, 929, 932
ApoI	RAATTY	2 cut(s)	11, 103
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	2 cut(s)	427, 882
AsuC2I	CCSGG	1 cut(s)	825
AsuHPI	GGTGA	2 cut(s)	449, 497
AvaII	GGWCC	2 cut(s)	427, 882
BanI	GGYRCC	1 cut(s)	484
BauI	CACGAG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	965
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	5 cut(s)	254, 858, 898, 919, 941
BccI	CCATC	3 cut(s)	184, 635, 907
BceAI	ACGGC	1 cut(s)	682
BciVI	GTATCC	1 cut(s)	755
BclI	TGATCA	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	825
BcoDI	GTCTC	2 cut(s)	338, 399
BfmI	CTRYAG	1 cut(s)	769
BfuI	GTATCC	1 cut(s)	755
BisI	GCNGC	7 cut(s)	243, 840, 847, 912, 930, 933, 1023
BlsI	GCNGC	7 cut(s)	244, 841, 848, 913, 931, 934, 1024
Bme1390I	CCNGG	1 cut(s)	825
Bme18I	GGWCC	2 cut(s)	427, 882
BmeRI	GACNNNNNGTC	1 cut(s)	966
BmgT120I	GGNCC	2 cut(s)	427, 882
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	825
BmsI	GCATC	2 cut(s)	304, 862
BoxI	GACNNNNGTC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	965
BplI	GAGNNNNNCTC	2 cut(s)	967, 999
BpmI	CTGGAG	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	825
BsaBI	GATNNNNATC	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	1 cut(s)	539
Bse1I	ACTGG	1 cut(s)	967
Bse8I	GATNNNNATC	1 cut(s)	582
BseGI	GGATG	1 cut(s)	877
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	1 cut(s)	539
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	967
BseRI	GAGGAG	1 cut(s)	512
BseXI	GCAGC	5 cut(s)	254, 858, 898, 919, 941
BsgI	GTGCAG	1 cut(s)	897
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	532, 1022
BshNI	GGYRCC	1 cut(s)	484
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	825
BslI	CCNNNNNNNGG	1 cut(s)	539
BsmAI	GTCTC	2 cut(s)	338, 399
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	2 cut(s)	532, 1022
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	7 cut(s)	60, 190, 535, 583, 676, 812, 895
BspACI	CCGC	3 cut(s)	839, 875, 1023
BspANI	GGCC	2 cut(s)	532, 1022
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	3 cut(s)	55, 185, 890
BspT107I	GGYRCC	1 cut(s)	484
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	967
BssMI	GATC	7 cut(s)	60, 190, 535, 583, 676, 812, 895
BssNAI	GTATAC	1 cut(s)	923
BssSI	CACGAG	1 cut(s)	281
Bst1107I	GTATAC	1 cut(s)	923
Bst2BI	CACGAG	1 cut(s)	281
Bst4CI	ACNGT	4 cut(s)	298, 364, 656, 820
BstAUI	TGTACA	1 cut(s)	615
BstC8I	GCNNGC	3 cut(s)	373, 721, 844
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	877
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	7 cut(s)	63, 193, 538, 586, 679, 815, 898
BstMAI	GTCTC	2 cut(s)	338, 399
BstMBI	GATC	7 cut(s)	60, 190, 535, 583, 676, 812, 895
BstMWI	GCNNNNNNNGC	1 cut(s)	628
BstNSI	RCATGY	3 cut(s)	519, 846, 929
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	823
BstSFI	CTRYAG	1 cut(s)	769
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	5 cut(s)	254, 858, 898, 919, 941
BstV2I	GAAGAC	1 cut(s)	965
BstZ17I	GTATAC	1 cut(s)	923
BsuI	GTATCC	1 cut(s)	755
BsuRI	GGCC	2 cut(s)	532, 1022
BtsCI	GGATG	1 cut(s)	877
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	3 cut(s)	373, 721, 844
CfoI	GCGC	1 cut(s)	567
Cfr13I	GGNCC	2 cut(s)	427, 882
Csp6I	GTAC	2 cut(s)	145, 616
CspCI	CAANNNNNGTGG	2 cut(s)	843, 878
CviAII	CATG	5 cut(s)	516, 680, 843, 908, 926
CviQI	GTAC	2 cut(s)	145, 616
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	7 cut(s)	62, 192, 537, 585, 678, 814, 897
DpnII	GATC	7 cut(s)	60, 190, 535, 583, 676, 812, 895
DraI	TTTAAA	1 cut(s)	237
DriI	GACNNNNNGTC	1 cut(s)	966
EaeI	YGGCCR	1 cut(s)	1020
Eam1105I	GACNNNNNGTC	1 cut(s)	966
Eco147I	AGGCCT	1 cut(s)	532
Eco47I	GGWCC	2 cut(s)	427, 882
FaeI	CATG	5 cut(s)	519, 683, 846, 911, 929
FalI	AAGNNNNNCTT	4 cut(s)	545, 577, 596, 628
FatI	CATG	5 cut(s)	515, 679, 842, 907, 925
FauNDI	CATATG	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	583
FblI	GTMKAC	3 cut(s)	333, 729, 922
Fnu4HI	GCNGC	7 cut(s)	243, 840, 847, 912, 930, 933, 1023
FokI	GGATG	1 cut(s)	884
Fsp4HI	GCNGC	7 cut(s)	243, 840, 847, 912, 930, 933, 1023
FspI	TGCGCA	1 cut(s)	566
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	7 cut(s)	243, 840, 847, 912, 930, 933, 1023
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	532, 1022
HapII	CCGG	1 cut(s)	825
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	5 cut(s)	519, 683, 846, 911, 929
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	721
HinfI	GANTC	4 cut(s)	21, 701, 944, 980
HpaII	CCGG	1 cut(s)	825
HphI	GGTGA	2 cut(s)	449, 497
Hpy166II	GTNNAC	3 cut(s)	334, 730, 923
Hpy188I	TCNGA	4 cut(s)	368, 448, 588, 747
Hpy188III	TCNNGA	4 cut(s)	152, 230, 281, 302
Hpy8I	GTNNAC	3 cut(s)	334, 730, 923
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	6 cut(s)	132, 214, 299, 434, 619, 752
HpyCH4III	ACNGT	4 cut(s)	298, 364, 656, 820
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	5 cut(s)	317, 846, 914, 929, 1010
HpyF10VI	GCNNNNNNNGC	1 cut(s)	628
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	5 cut(s)	519, 683, 846, 911, 929
HspAI	GCGC	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	7 cut(s)	60, 190, 535, 583, 676, 812, 895
LmnI	GCTCC	1 cut(s)	628
Lsp1109I	GCAGC	5 cut(s)	254, 858, 898, 919, 941
LweI	GCATC	2 cut(s)	304, 862
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	4 cut(s)	355, 650, 694, 977
MalI	GATC	7 cut(s)	62, 192, 537, 585, 678, 814, 897
MboI	GATC	7 cut(s)	60, 190, 535, 583, 676, 812, 895
MboII	GAAGA	4 cut(s)	181, 335, 535, 970
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	4 cut(s)	11, 91, 103, 546
MlyI	GAGTC	2 cut(s)	15, 974
MmeI	TCCRAC	2 cut(s)	638, 770
MnlI	CCTC	6 cut(s)	40, 74, 122, 202, 490, 934
MseI	TTAA	2 cut(s)	111, 236
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	932
MspI	CCGG	1 cut(s)	825
MspR9I	CCNGG	1 cut(s)	825
Mva1269I	GAATGC	1 cut(s)	808
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	628
NciI	CCSGG	1 cut(s)	825
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	7 cut(s)	60, 190, 535, 583, 676, 812, 895
NlaIII	CATG	5 cut(s)	519, 683, 846, 911, 929
NlaIV	GGNNCC	1 cut(s)	486
NmuCI	GTSAC	2 cut(s)	355, 977
NsbI	TGCGCA	1 cut(s)	566
NspI	RCATGY	3 cut(s)	519, 846, 929
PaeI	GCATGC	1 cut(s)	846
PceI	AGGCCT	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PctI	GAATGC	1 cut(s)	808
PfeI	GAWTC	2 cut(s)	701, 944
PkrI	GCNGC	7 cut(s)	244, 841, 848, 913, 931, 934, 1024
PleI	GAGTC	2 cut(s)	15, 974
PpsI	GAGTC	2 cut(s)	15, 974
PshAI	GACNNNNGTC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	2 cut(s)	427, 882
PvuII	CAGCTG	1 cut(s)	932
RsaI	GTAC	2 cut(s)	146, 617
RsaNI	GTAC	2 cut(s)	145, 616
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	111, 236
SatI	GCNGC	7 cut(s)	243, 840, 847, 912, 930, 933, 1023
Sau3AI	GATC	7 cut(s)	60, 190, 535, 583, 676, 812, 895
Sau96I	GGNCC	2 cut(s)	427, 882
SchI	GAGTC	2 cut(s)	15, 974
ScrFI	CCNGG	1 cut(s)	825
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	7 cut(s)	51, 83, 143, 445, 725, 862, 934
SfaNI	GCATC	2 cut(s)	304, 862
SfcI	CTRYAG	1 cut(s)	769
SinI	GGWCC	2 cut(s)	427, 882
SmiMI	CAYNNNNRTG	1 cut(s)	380
SphI	GCATGC	1 cut(s)	846
Sse9I	AATT	4 cut(s)	11, 91, 103, 546
SseBI	AGGCCT	1 cut(s)	532
SsiI	CCGC	3 cut(s)	839, 875, 1023
SspI	AATATT	1 cut(s)	791
StuI	AGGCCT	1 cut(s)	532
StyD4I	CCNGG	1 cut(s)	823
TaaI	ACNGT	4 cut(s)	298, 364, 656, 820
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	3 cut(s)	77, 87, 815
TasI	AATT	4 cut(s)	11, 91, 103, 546
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	2 cut(s)	842, 1025
TfiI	GAWTC	2 cut(s)	701, 944
Tru1I	TTAA	2 cut(s)	111, 236
Tru9I	TTAA	2 cut(s)	111, 236
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	2 cut(s)	355, 977
TseI	GCWGC	5 cut(s)	242, 846, 911, 929, 932
Tsp45I	GTSAC	2 cut(s)	355, 977
TspDTI	ATGAA	2 cut(s)	465, 728
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	2 cut(s)	427, 882
XapI	RAATTY	2 cut(s)	11, 103
XceI	RCATGY	3 cut(s)	519, 846, 929
XmiI	GTMKAC	3 cut(s)	333, 729, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.