Rh2AG243100

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
26594191 .. 26604617
10427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG243100.1

Sequence Viewer

Length: 429 bp
ATGTCAGCACTATCTCTAAAGTGCGAACATCGACAAAACAGCCTCGCTCAGGCCGCGCGGTCTCGCATTATCGAACTCTCGCACCGCGGGTTGCATTGCCATGGGGGTTGTTACCTTGCTCATCAGCGATTGGCTATTGTGGACCCTGCCTCAGGAGATCAGCCGCTCTACAACGAGGACAAGACCGTCATTGTCACGGTTAATGGTGAGATATATAACCACAAGCAGTTGAGAGAAACATTGAAGGGTCATCGATTCCGAACTGGCAGTGACTGTGAAGTGATAGCGCACCTTTACGAGGAACATGGGGAAGAATTTGTTGACATGCTGGACGGGATGTTCTCCTTTGTCCTTCTTGATACAAGAGACAATACTTTCATGGCGGCTCAAGATGCTATTGGCATAACCCCACTATTCAAACTTGGATAG

Protein Analysis

142

Amino Acids

15.95

Weight (kDa)

5.95

Isoelectric Point (pI)

25.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATase_6 PF13522 28 - 139 1.8e-33 Glutamine amidotransferase domain
GATase_7 PF13537 41 - 139 1.7e-36 Glutamine amidotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AccBSI CCGCTC 1 cut(s) 166
AccII CGCG 3 cut(s) 56, 58, 87
AciI CCGC 6 cut(s) 54, 58, 85, 87, 164, 383
AcsI RAATTY 1 cut(s) 314
AfiI CCNNNNNNNGG 3 cut(s) 49, 152, 298
AgsI TTSAA 2 cut(s) 244, 418
AloI GAACNNNNNNTCC 2 cut(s) 323, 355
Alw26I GTCTC 2 cut(s) 66, 360
AlwNI CAGNNNCTG 1 cut(s) 273
AoxI GGCC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 314
AspLEI GCGC 2 cut(s) 58, 289
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 142
AxyI CCTNAGG 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 66, 360
BisI GCNGC 3 cut(s) 54, 164, 384
BlsI GCNGC 3 cut(s) 55, 165, 385
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 144
BmsI GCATC 1 cut(s) 382
Bpu10I CCTNAGC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 372
Bsa29I ATCGAT 1 cut(s) 253
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 85, 100
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 152, 298
Bse1I ACTGG 1 cut(s) 268
Bse21I CCTNAGG 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 94
BseCI ATCGAT 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 85, 100
BseGI GGATG 1 cut(s) 342
BseLI CCNNNNNNNGG 3 cut(s) 49, 152, 298
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 2 cut(s) 62, 165
BseNI ACTGG 1 cut(s) 268
Bsh1236I CGCG 3 cut(s) 56, 58, 87
BshFI GGCC 1 cut(s) 53
BshVI ATCGAT 1 cut(s) 253
BslI CCNNNNNNNGG 3 cut(s) 49, 152, 298
BsmAI GTCTC 2 cut(s) 66, 360
BsnI GGCC 1 cut(s) 53
Bso31I GGTCTC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 157
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 6 cut(s) 54, 58, 85, 87, 164, 383
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 2 cut(s) 61, 164
BspDI ATCGAT 1 cut(s) 253
BspFNI CGCG 3 cut(s) 56, 58, 87
BspLI GGNNCC 1 cut(s) 144
BspTNI GGTCTC 1 cut(s) 66
BsrBI CCGCTC 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 85, 100
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 100
Bst4CI ACNGT 3 cut(s) 187, 199, 275
BstDEI CTNAG 2 cut(s) 48, 151
BstDSI CCRYGG 2 cut(s) 85, 100
BstENI CCTNNNNNAGG 3 cut(s) 47, 150, 296
BstF5I GGATG 1 cut(s) 342
BstFNI CGCG 3 cut(s) 56, 58, 87
BstHHI GCGC 2 cut(s) 58, 289
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 66, 360
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 53, 392
BstNSI RCATGY 1 cut(s) 328
BstUI CGCG 3 cut(s) 56, 58, 87
Bsu15I ATCGAT 1 cut(s) 253
Bsu36I CCTNAGG 1 cut(s) 151
BsuRI GGCC 1 cut(s) 53
BsuTUI ATCGAT 1 cut(s) 253
BtgI CCRYGG 2 cut(s) 85, 100
BtsCI GGATG 1 cut(s) 342
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 274
CaiI CAGNNNCTG 1 cut(s) 273
CfoI GCGC 2 cut(s) 58, 289
Cfr13I GGNCC 1 cut(s) 142
Cfr42I CCGCGG 1 cut(s) 88
ClaI ATCGAT 1 cut(s) 253
CviAII CATG 4 cut(s) 101, 305, 325, 379
CviJI RGCY 5 cut(s) 42, 53, 134, 163, 386
CviKI_1 RGCY 5 cut(s) 42, 53, 134, 163, 386
DdeI CTNAG 2 cut(s) 48, 151
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 100
Eco31I GGTCTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 142
Eco81I CCTNAGG 1 cut(s) 151
EcoNI CCTNNNNNAGG 3 cut(s) 47, 150, 296
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 4 cut(s) 104, 308, 328, 382
FaiI YATR 7 cut(s) 102, 214, 216, 306, 326, 380, 404
FatI CATG 4 cut(s) 100, 304, 324, 378
FauI CCCGC 1 cut(s) 80
Fnu4HI GCNGC 3 cut(s) 54, 164, 384
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 3 cut(s) 54, 164, 384
GlaI GCGC 2 cut(s) 57, 288
GluI GCNGC 3 cut(s) 54, 164, 384
HaeIII GGCC 1 cut(s) 53
HhaI GCGC 2 cut(s) 58, 289
Hin1II CATG 4 cut(s) 104, 308, 328, 382
Hin6I GCGC 2 cut(s) 56, 287
HinP1I GCGC 2 cut(s) 56, 287
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 1 cut(s) 255
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 142, 322
Hpy188I TCNGA 1 cut(s) 260
Hpy188III TCNNGA 3 cut(s) 153, 356, 389
Hpy8I GTNNAC 2 cut(s) 142, 322
HpyAV CCTTC 2 cut(s) 238, 362
HpyCH4III ACNGT 3 cut(s) 187, 199, 275
HpyCH4V TGCA 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 392
HpyF3I CTNAG 2 cut(s) 48, 151
Hsp92II CATG 4 cut(s) 104, 308, 328, 382
HspAI GCGC 2 cut(s) 56, 287
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 5 cut(s) 35, 138, 159, 249, 314
LweI GCATC 1 cut(s) 382
MaeIII GTNAC 3 cut(s) 110, 193, 269
MalI GATC 1 cut(s) 159
MbiI CCGCTC 1 cut(s) 166
MboI GATC 1 cut(s) 157
MboII GAAGA 1 cut(s) 323
MluCI AATT 1 cut(s) 314
MnlI CCTC 4 cut(s) 53, 160, 169, 292
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 87
MvnI CGCG 3 cut(s) 56, 58, 87
MwoI GCNNNNNNNGC 2 cut(s) 53, 392
NcoI CCATGG 1 cut(s) 100
NdeII GATC 1 cut(s) 157
NlaIII CATG 4 cut(s) 104, 308, 328, 382
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 2 cut(s) 193, 269
NspI RCATGY 1 cut(s) 328
PfeI GAWTC 1 cut(s) 255
PkrI GCNGC 3 cut(s) 55, 165, 385
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 99
SacII CCGCGG 1 cut(s) 88
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 3 cut(s) 54, 164, 384
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 142
SetI ASST 2 cut(s) 117, 294
SfaNI GCATC 1 cut(s) 382
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
Sse9I AATT 1 cut(s) 314
SsiI CCGC 6 cut(s) 54, 58, 85, 87, 164, 383
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 3 cut(s) 187, 199, 275
TaqI TCGA 3 cut(s) 31, 72, 253
TasI AATT 1 cut(s) 314
TauI GCSGC 3 cut(s) 56, 166, 386
TfiI GAWTC 1 cut(s) 255
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 2 cut(s) 193, 269
Tsp45I GTSAC 2 cut(s) 193, 269
TspDTI ATGAA 1 cut(s) 367
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 142
XagI CCTNNNNNAGG 3 cut(s) 47, 150, 296
XapI RAATTY 1 cut(s) 314
XceI RCATGY 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.