Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

25972769 .. 25974931

Gene Structure 2163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48716

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGACATTGATCCAGAATGGAAAATGATCAGGCCTGATCTTGGAAGAATTGAGAAGTGGGTCTTACGCAAAGCATTTGATGATGATCAGAAGCCATATTTACCGAAGCACATCTTGTACAAGCAGAAGGAGCAGTTTAGTGATGGTGTCGGTTACAGCTGGATTGACGGGTTGAAAGATCATGCAAACAAACAAGTAACAGATTCGATGCTGATGAACGCAAGCTTTGTCTACCCTGAAAACACTCCGACTACAAAAGAAGGATACTACTATAGGATTATCTTTGAGAAATATTTTCCAAAGAATGCTGCGAGATCGACAGTTCCTGGTGGTACAAGTGTGGCATGCAGCACAGCAAAAGCTGTGGAGTGGGATGCAGAATGGTTCAAGAACCCCGATCCATCTGGTCGTGCTGCACTTGGTATACATGCAGCTGCGTATGAGGAATCCAAAGATGTGAAGACTGGAAGTCTTGAGAGTGACTCTCCACAGAAACTTGTAAAAGGGGTTGCAGAGAAAGTGGCTGTAGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

178

Amino Acids

20.08

Weight (kDa)

6.32

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	2 - 104	2e-12	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	231, 424
AclWI	GGATC	2 cut(s)	5, 392
AfaI	GTAC	2 cut(s)	119, 334
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	175, 388
AhdI	GACNNNNNGTC	1 cut(s)	468
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	4 cut(s)	159, 225, 362, 434
AluI	AGCT	4 cut(s)	159, 225, 362, 434
AlwI	GGATC	2 cut(s)	5, 392
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	5 cut(s)	308, 348, 413, 431, 434
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BbsI	GAAGAC	1 cut(s)	467
BbvI	GCAGC	5 cut(s)	295, 360, 400, 421, 443
BccI	CCATC	2 cut(s)	137, 409
BciT130I	CCWGG	1 cut(s)	327
BciVI	GTATCC	1 cut(s)	257
BclI	TGATCA	2 cut(s)	27, 85
BfmI	CTRYAG	2 cut(s)	271, 525
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	5 cut(s)	309, 349, 414, 432, 435
BlsI	GCNGC	5 cut(s)	310, 350, 415, 433, 436
Bme1390I	CCNGG	1 cut(s)	327
BmeRI	GACNNNNNGTC	1 cut(s)	468
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	198, 364
BpiI	GAAGAC	1 cut(s)	467
BplI	GAGNNNNNCTC	4 cut(s)	467, 499, 469, 501
BpuEI	CTTGAG	1 cut(s)	494
BsaBI	GATNNNNATC	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	469
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	379
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	469
BseXI	GCAGC	5 cut(s)	295, 360, 400, 421, 443
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	34
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
BspANI	GGCC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	5, 392
BsrGI	TGTACA	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	469
BssMI	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
BssNAI	GTATAC	1 cut(s)	425
Bst1107I	GTATAC	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	322
BstAUI	TGTACA	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	223, 346
BstF5I	GGATG	1 cut(s)	379
BstKTI	GATC	7 cut(s)	13, 30, 40, 88, 181, 317, 400
BstMBI	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	2 cut(s)	348, 431
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	2 cut(s)	271, 525
BstV1I	GCAGC	5 cut(s)	295, 360, 400, 421, 443
BstV2I	GAAGAC	1 cut(s)	467
BstZ17I	GTATAC	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	379
Cac8I	GCNNGC	2 cut(s)	223, 346
CaiI	CAGNNNCTG	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	118, 333
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	3 cut(s)	182, 345, 428
CviJI	RGCY	7 cut(s)	34, 94, 159, 225, 362, 434, 524
CviKI_1	RGCY	7 cut(s)	34, 94, 159, 225, 362, 434, 524
CviQI	GTAC	2 cut(s)	118, 333
DpnI	GATC	7 cut(s)	12, 29, 39, 87, 180, 316, 399
DpnII	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
DriI	GACNNNNNGTC	1 cut(s)	468
Eam1105I	GACNNNNNGTC	1 cut(s)	468
Eco147I	AGGCCT	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	325
FaeI	CATG	3 cut(s)	185, 348, 431
FaiI	YATR	7 cut(s)	97, 183, 273, 346, 425, 429, 441
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 98, 130
FatI	CATG	3 cut(s)	181, 344, 427
FbaI	TGATCA	2 cut(s)	27, 85
FblI	GTMKAC	2 cut(s)	231, 424
Fnu4HI	GCNGC	5 cut(s)	309, 349, 414, 432, 435
FokI	GGATG	1 cut(s)	386
Fsp4HI	GCNGC	5 cut(s)	309, 349, 414, 432, 435
GluI	GCNGC	5 cut(s)	309, 349, 414, 432, 435
HaeIII	GGCC	1 cut(s)	34
Hin1II	CATG	3 cut(s)	185, 348, 431
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	3 cut(s)	203, 446, 482
Hpy166II	GTNNAC	2 cut(s)	232, 425
Hpy188I	TCNGA	2 cut(s)	90, 249
Hpy188III	TCNNGA	3 cut(s)	14, 388, 473
Hpy8I	GTNNAC	2 cut(s)	232, 425
HpyAV	CCTTC	2 cut(s)	121, 254
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4V	TGCA	6 cut(s)	185, 348, 377, 416, 431, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
Hsp92II	CATG	3 cut(s)	185, 348, 431
Ksp22I	TGATCA	2 cut(s)	27, 85
Kzo9I	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	9 cut(s)	16, 27, 48, 145, 249, 312, 339, 390, 450
Lsp1109I	GCAGC	5 cut(s)	295, 360, 400, 421, 443
LweI	GCATC	2 cut(s)	198, 364
MaeIII	GTNAC	3 cut(s)	152, 196, 479
MalI	GATC	7 cut(s)	12, 29, 39, 87, 180, 316, 399
MboI	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
MboII	GAAGA	2 cut(s)	57, 472
MluCI	AATT	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	1 cut(s)	436
MspA1I	CMGCKG	2 cut(s)	159, 434
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	130
NdeII	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
NlaIII	CATG	3 cut(s)	185, 348, 431
NmuCI	GTSAC	1 cut(s)	479
NspI	RCATGY	2 cut(s)	348, 431
PaeI	GCATGC	1 cut(s)	348
PceI	AGGCCT	1 cut(s)	34
PctI	GAATGC	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	203, 446
PkrI	GCNGC	5 cut(s)	310, 350, 415, 433, 436
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	326
PvuII	CAGCTG	2 cut(s)	159, 434
RsaI	GTAC	2 cut(s)	119, 334
RsaNI	GTAC	2 cut(s)	118, 333
SatI	GCNGC	5 cut(s)	309, 349, 414, 432, 435
Sau3AI	GATC	7 cut(s)	10, 27, 37, 85, 178, 314, 397
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	4 cut(s)	161, 227, 364, 436
SfaNI	GCATC	2 cut(s)	198, 364
SfcI	CTRYAG	2 cut(s)	271, 525
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	1 cut(s)	48
SseBI	AGGCCT	1 cut(s)	34
SspI	AATATT	1 cut(s)	293
StuI	AGGCCT	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	322
TaqI	TCGA	2 cut(s)	206, 317
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	2 cut(s)	203, 446
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	5 cut(s)	308, 348, 413, 431, 434
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	1 cut(s)	230
XceI	RCATGY	2 cut(s)	348, 431
XmiI	GTMKAC	2 cut(s)	231, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.