FvH4_3g23760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000473
Physical Location & Seq
Reverse (-)
16836189 .. 16839334
3146 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23760.t1

Sequence Viewer

Length: 255 bp
ATGAGGATTCGGTACGAGGATCAAATGCGAGTAGCTAGATTGCAGGAGCAGAAGGATAAGGATTTCAGAATGCGTGTCGCAGCGTCACTAATTTTAATTAGCATCAGAACTAGCTGTCGGATTCCAGGTGCTTGGAAACCACCGACACCGGGTTTGGGGTGTGACAAGTTATCTGAGTTTTTGATTAGTGGTGGTGTTTGCCAAATATTGTGGAGCAAAGACTCGGACTCCAAGAATACCAGGTTTCTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.59

Weight (kDa)

9.73

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 27
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 2 cut(s) 149, 155
AjnI CCWGG 2 cut(s) 124, 239
AluBI AGCT 2 cut(s) 35, 114
AluI AGCT 2 cut(s) 35, 114
AlwI GGATC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 80
ArsI GACNNNNNNTTYG 2 cut(s) 136, 168
AsuC2I CCSGG 1 cut(s) 150
BbvI GCAGC 1 cut(s) 92
BciT130I CCWGG 2 cut(s) 126, 241
BcnI CCSGG 1 cut(s) 150
BfaI CTAG 2 cut(s) 36, 111
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 3 cut(s) 126, 150, 241
BmrFI CCNGG 3 cut(s) 126, 150, 241
BmsI GCATC 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 155
BseBI CCWGG 2 cut(s) 126, 241
BseLI CCNNNNNNNGG 2 cut(s) 149, 155
BseMII CTCAG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 149, 155
BsmI GAATGC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 166
BspPI GGATC 1 cut(s) 27
BssMI GATC 1 cut(s) 19
Bst2UI CCWGG 2 cut(s) 126, 241
BstDEI CTNAG 1 cut(s) 174
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstNI CCWGG 2 cut(s) 126, 241
BstSCI CCNGG 3 cut(s) 124, 148, 239
BstV1I GCAGC 1 cut(s) 92
BstXI CCANNNNNNTGG 1 cut(s) 132
CseI GACGC 1 cut(s) 72
CsiI ACCWGGT 1 cut(s) 239
Csp6I GTAC 1 cut(s) 13
CspCI CAANNNNNGTGG 2 cut(s) 191, 226
CviJI RGCY 2 cut(s) 35, 114
CviKI_1 RGCY 2 cut(s) 35, 114
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 124, 239
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 36, 111
GluI GCNGC 1 cut(s) 81
HapII CCGG 1 cut(s) 149
HgaI GACGC 1 cut(s) 72
HinfI GANTC 4 cut(s) 7, 121, 221, 227
HpaII CCGG 1 cut(s) 149
Hpy188I TCNGA 5 cut(s) 68, 107, 120, 175, 226
HpyAV CCTTC 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 174
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 2 cut(s) 46, 213
LpnPI CCDG 5 cut(s) 29, 111, 138, 162, 226
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 111
MabI ACCWGGT 1 cut(s) 239
MaeI CTAG 2 cut(s) 36, 111
MaeIII GTNAC 2 cut(s) 84, 161
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MluCI AATT 2 cut(s) 90, 96
MlyI GAGTC 2 cut(s) 215, 221
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 1 cut(s) 10
MseI TTAA 1 cut(s) 95
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 3 cut(s) 126, 150, 241
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 2 cut(s) 126, 241
NciI CCSGG 1 cut(s) 150
NdeII GATC 1 cut(s) 19
NmuCI GTSAC 2 cut(s) 84, 161
PctI GAATGC 1 cut(s) 75
PfeI GAWTC 2 cut(s) 7, 121
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 2 cut(s) 215, 221
PpsI GAGTC 2 cut(s) 215, 221
Psp6I CCWGG 2 cut(s) 124, 239
PspGI CCWGG 2 cut(s) 124, 239
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 19
SchI GAGTC 2 cut(s) 215, 221
ScrFI CCNGG 3 cut(s) 126, 150, 241
SetI ASST 4 cut(s) 37, 116, 130, 245
SexAI ACCWGGT 1 cut(s) 239
SfaNI GCATC 1 cut(s) 111
Sse9I AATT 2 cut(s) 90, 96
SspI AATATT 1 cut(s) 207
SspMI CTAG 2 cut(s) 36, 111
StyD4I CCNGG 3 cut(s) 124, 148, 239
TasI AATT 2 cut(s) 90, 96
TfiI GAWTC 2 cut(s) 7, 121
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseFI GTSAC 2 cut(s) 84, 161
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 2 cut(s) 84, 161
XspI CTAG 2 cut(s) 36, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.