Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

24041926 .. 24068655

Gene Structure 26730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG172600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGACCCTGCCTCAGGAGATCAGCCACTCTACAACGAGGACAAGACCGTCATTGTCACGGTTAATGGTGAGATATATAACCACAAGCAGTTGAGAGAAACATTGAAGGGTCATCAATTCCGAACTGGCAGTGACTGTGAAGTGATAGCACATCTTTGGGTTCCGGCTTTACCTAATGGGAAACCTACAGCCACAGGCTTGGCTCAACGGGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

72

Amino Acids

7.97

Weight (kDa)

5.81

Isoelectric Point (pI)

24.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_7	PF13537	2 - 53	5.7e-17	Glutamine amidotransferase domain
GATase_6	PF13522	4 - 53	3.3e-14	Glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	13
BfmI	CTRYAG	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	130
Bse21I	CCTNAGG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	6, 162
BsrI	ACTGG	1 cut(s)	130
BssMI	GATC	1 cut(s)	19
Bst4CI	ACNGT	3 cut(s)	49, 61, 137
BstDEI	CTNAG	1 cut(s)	13
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	186
BstXI	CCANNNNNNTGG	1 cut(s)	199
Bsu36I	CCTNAGG	1 cut(s)	13
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	4
CviJI	RGCY	5 cut(s)	25, 167, 191, 198, 203
CviKI_1	RGCY	5 cut(s)	25, 167, 191, 198, 203
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	4
Eco81I	CCTNAGG	1 cut(s)	13
EcoNI	CCTNNNNNAGG	1 cut(s)	12
FaiI	YATR	3 cut(s)	76, 78, 217
HapII	CCGG	1 cut(s)	164
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	1 cut(s)	15
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	3 cut(s)	49, 61, 137
HpyF3I	CTNAG	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	4 cut(s)	21, 111, 177, 180
MaeIII	GTNAC	2 cut(s)	55, 131
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MluCI	AATT	1 cut(s)	116
MnlI	CCTC	2 cut(s)	22, 31
MseI	TTAA	1 cut(s)	63
MspI	CCGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	19
NlaIV	GGNNCC	2 cut(s)	6, 162
NmuCI	GTSAC	2 cut(s)	55, 131
PspN4I	GGNNCC	2 cut(s)	6, 162
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	4
SetI	ASST	2 cut(s)	175, 187
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	116
TaaI	ACNGT	3 cut(s)	49, 61, 137
TasI	AATT	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	2 cut(s)	55, 131
Tsp45I	GTSAC	2 cut(s)	55, 131
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.