Rw2G018500

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
24011207 .. 24014472
3266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G018500.1

Sequence Viewer

Length: 1056 bp
ATGTACCATTCAGTGTTCTTTTGTCCGGAGGATTGGACTCCACTCGTTGCTGCTGTGGCTTGTCACTATTTGGCTAAATCAGAAGCTGCATGTCAGTGGGGGTCACAATTACATACCTTTTGCGTTGGCTTGGAGGGTTCACCAGATTTAAAAGCAGCAAGAGAAGTTGCTGATTATCTTGGAACTCATCATCACGAGTTTCACTTTACTCTTCAGGTAATTTATAAGGGATGCATAGATGCACTTGAAGAAGTTATCTACCACATTGAGACATATGATGTGATCATTATTAAATCCCTGGGAGTAAAAATGGTCCTTTCTGGTGAAGGTTCAGATGCAATCTTTGGTGGCTACTTGTATTTCCACAAGGCACCAAACAAGGAGGAGTTTCACCAAGAAACATGCCAGAAGATTAAAGCTCTTCATCTGTACGACTGTCTGAGGGCCAACAAATCGACTTCAGCTTGGGGTGTTGAGGCTCGAGTACCGTTTCTTGACAAAGAATTCATCAAGACTGCTATGAACATTGATCCAGAATGGAAAATGATCAGGCCTGATCTTGGGAGAATTGAGAAGTGGGTCTTGCGCAAAGTATTTGATGATGATCAGAAGCCATATTTACCAAAGCACATCTTGTACAAGCAGAAGGAGCAGTTTAGTGATGGTGTCGGTTACAGCTGGATTGACGGCTTGAAAGATCATGCCAACAAACAAGTAACAGATTCAATGCTGACGAACGCAAGCTTTGTCTACCCTGAAAACTCTCCACCTACAAAAGAAGGATACTACTATAGGACTATCTTTGAGAAATATTTTCCAAAGAATGTTGCGAGATCGACAGTTCCTGGTGGTCCAAGTGTGGCATGCAGCACAGCAAAAGCTGTAGAGTGGGATGCCGAATGGTCCAAGAACCCTGATCCATCTGGTCGTGCTGCACTTGGTATACATGCAGCTTCATATGAGGAATCCAAAGATGTGAAGACTGGAAGTCTTGTGAGTGACTCTCCACAGAAACTTGTAAAAGGGGTTGCAGAGAAAGTGGCTGCAGTAGTTTGA

Protein Analysis

351

Amino Acids

39.5

Weight (kDa)

6.17

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asn_synthase PF00733 17 - 127 1.1e-19 Asparagine synthase
Asn_synthase PF00733 125 - 276 1.3e-31 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
Acc16I TGCGCA 1 cut(s) 587
AccB1I GGYRCC 1 cut(s) 370
AccI GTMKAC 2 cut(s) 750, 943
AccIII TCCGGA 1 cut(s) 25
AclWI GGATC 2 cut(s) 524, 911
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 2 cut(s) 197, 444
AfaI GTAC 4 cut(s) 5, 431, 486, 638
AfiI CCNNNNNNNGG 1 cut(s) 560
AgsI TTSAA 3 cut(s) 248, 694, 726
AhdI GACNNNNNGTC 1 cut(s) 987
AjnI CCWGG 2 cut(s) 297, 844
AluBI AGCT 7 cut(s) 86, 419, 464, 678, 744, 881, 953
AluI AGCT 7 cut(s) 86, 419, 464, 678, 744, 881, 953
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 2 cut(s) 524, 911
AlwNI CAGNNNCTG 2 cut(s) 86, 845
Ama87I CYCGRG 1 cut(s) 480
Aor13HI TCCGGA 1 cut(s) 25
AoxI GGCC 2 cut(s) 444, 551
ApeKI GCWGC 7 cut(s) 50, 86, 155, 867, 932, 950, 1043
ApoI RAATTY 1 cut(s) 503
AspLEI GCGC 1 cut(s) 588
AspS9I GGNCC 4 cut(s) 313, 444, 851, 903
AsuHPI GGTGA 3 cut(s) 132, 335, 383
AvaI CYCGRG 1 cut(s) 480
AvaII GGWCC 3 cut(s) 313, 851, 903
BanI GGYRCC 1 cut(s) 370
BauI CACGAG 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 986
BbvI GCAGC 7 cut(s) 37, 73, 167, 879, 919, 962, 1030
BccI CCATC 2 cut(s) 656, 928
BceAI ACGGC 1 cut(s) 703
BciT130I CCWGG 2 cut(s) 299, 846
BciVI GTATCC 1 cut(s) 776
BclI TGATCA 3 cut(s) 282, 546, 604
BcoDI GTCTC 1 cut(s) 263
BfmI CTRYAG 3 cut(s) 790, 882, 1044
BfuI GTATCC 1 cut(s) 776
BisI GCNGC 7 cut(s) 51, 87, 156, 868, 933, 951, 1044
BlsI GCNGC 7 cut(s) 52, 88, 157, 869, 934, 952, 1045
Bme1390I CCNGG 2 cut(s) 299, 846
Bme18I GGWCC 3 cut(s) 313, 851, 903
BmeRI GACNNNNNGTC 1 cut(s) 987
BmeT110I CYCGRG 1 cut(s) 480
BmgT120I GGNCC 4 cut(s) 313, 444, 851, 903
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 2 cut(s) 299, 846
BmsI GCATC 4 cut(s) 221, 229, 325, 883
BpiI GAAGAC 1 cut(s) 986
BplI GAGNNNNNCTC 2 cut(s) 988, 1020
BsaBI GATNNNNATC 1 cut(s) 603
BsaJI CCNNGG 2 cut(s) 297, 298
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 560
Bse1I ACTGG 1 cut(s) 988
Bse8I GATNNNNATC 1 cut(s) 603
BseAI TCCGGA 1 cut(s) 25
BseBI CCWGG 2 cut(s) 299, 846
BseDI CCNNGG 2 cut(s) 297, 298
BseGI GGATG 2 cut(s) 236, 898
BseJI GATNNNNATC 1 cut(s) 603
BseLI CCNNNNNNNGG 1 cut(s) 560
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 1 cut(s) 988
BseRI GAGGAG 1 cut(s) 398
BseXI GCAGC 7 cut(s) 37, 73, 167, 879, 919, 962, 1030
BsgI GTGCAG 1 cut(s) 918
BshFI GGCC 2 cut(s) 446, 553
BshNI GGYRCC 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 480
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 560
BsmAI GTCTC 1 cut(s) 263
BsnI GGCC 2 cut(s) 446, 553
BsoBI CYCGRG 1 cut(s) 480
Bsp13I TCCGGA 1 cut(s) 25
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 8 cut(s) 282, 529, 546, 556, 604, 697, 833, 916
BspANI GGCC 2 cut(s) 446, 553
BspCNI CTCAG 1 cut(s) 432
BspEI TCCGGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 372
BspMAI CTGCAG 1 cut(s) 1048
BspPI GGATC 2 cut(s) 524, 911
BspQI GCTCTTC 1 cut(s) 426
BspT107I GGYRCC 1 cut(s) 370
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 1 cut(s) 988
BssECI CCNNGG 2 cut(s) 297, 298
BssMI GATC 8 cut(s) 282, 529, 546, 556, 604, 697, 833, 916
BssNAI GTATAC 1 cut(s) 944
BssSI CACGAG 1 cut(s) 194
Bst1107I GTATAC 1 cut(s) 944
Bst2BI CACGAG 1 cut(s) 194
Bst2UI CCWGG 2 cut(s) 299, 846
Bst4CI ACNGT 3 cut(s) 437, 489, 841
Bst6I CTCTTC 2 cut(s) 216, 426
BstAUI TGTACA 1 cut(s) 636
BstC8I GCNNGC 2 cut(s) 742, 865
BstDEI CTNAG 1 cut(s) 440
BstF5I GGATG 2 cut(s) 236, 898
BstHHI GCGC 1 cut(s) 588
BstKTI GATC 8 cut(s) 285, 532, 549, 559, 607, 700, 836, 919
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 8 cut(s) 282, 529, 546, 556, 604, 697, 833, 916
BstMWI GCNNNNNNNGC 2 cut(s) 56, 649
BstNI CCWGG 2 cut(s) 299, 846
BstNSI RCATGY 4 cut(s) 93, 405, 867, 950
BstSCI CCNGG 2 cut(s) 297, 844
BstSFI CTRYAG 3 cut(s) 790, 882, 1044
BstV1I GCAGC 7 cut(s) 37, 73, 167, 879, 919, 962, 1030
BstV2I GAAGAC 1 cut(s) 986
BstZ17I GTATAC 1 cut(s) 944
BsuI GTATCC 1 cut(s) 776
BsuRI GGCC 2 cut(s) 446, 553
BtsCI GGATG 2 cut(s) 236, 898
BtsIMutI CAGTG 2 cut(s) 18, 101
Cac8I GCNNGC 2 cut(s) 742, 865
CaiI CAGNNNCTG 2 cut(s) 86, 845
CfoI GCGC 1 cut(s) 588
Cfr13I GGNCC 4 cut(s) 313, 444, 851, 903
Csp6I GTAC 4 cut(s) 4, 430, 485, 637
CviAII CATG 5 cut(s) 90, 402, 701, 864, 947
CviQI GTAC 4 cut(s) 4, 430, 485, 637
DdeI CTNAG 1 cut(s) 440
DpnI GATC 8 cut(s) 284, 531, 548, 558, 606, 699, 835, 918
DpnII GATC 8 cut(s) 282, 529, 546, 556, 604, 697, 833, 916
DraI TTTAAA 1 cut(s) 150
DriI GACNNNNNGTC 1 cut(s) 987
Eam1104I CTCTTC 2 cut(s) 216, 426
Eam1105I GACNNNNNGTC 1 cut(s) 987
EarI CTCTTC 2 cut(s) 216, 426
Eco147I AGGCCT 1 cut(s) 553
Eco47I GGWCC 3 cut(s) 313, 851, 903
Eco57I CTGAAG 2 cut(s) 197, 444
Eco88I CYCGRG 1 cut(s) 480
EcoRI GAATTC 1 cut(s) 503
EcoRII CCWGG 2 cut(s) 297, 844
EcoT22I ATGCAT 1 cut(s) 236
FaeI CATG 5 cut(s) 93, 405, 704, 867, 950
FalI AAGNNNNNCTT 4 cut(s) 566, 598, 617, 649
FatI CATG 5 cut(s) 89, 401, 700, 863, 946
FauNDI CATATG 2 cut(s) 274, 958
FbaI TGATCA 3 cut(s) 282, 546, 604
FblI GTMKAC 2 cut(s) 750, 943
Fnu4HI GCNGC 7 cut(s) 51, 87, 156, 868, 933, 951, 1044
FokI GGATG 2 cut(s) 243, 905
Fsp4HI GCNGC 7 cut(s) 51, 87, 156, 868, 933, 951, 1044
FspI TGCGCA 1 cut(s) 587
GlaI GCGC 1 cut(s) 587
GluI GCNGC 7 cut(s) 51, 87, 156, 868, 933, 951, 1044
HaeIII GGCC 2 cut(s) 446, 553
HapII CCGG 1 cut(s) 26
HhaI GCGC 1 cut(s) 588
Hin1II CATG 5 cut(s) 93, 405, 704, 867, 950
Hin6I GCGC 1 cut(s) 586
HinP1I GCGC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 742
HinfI GANTC 4 cut(s) 37, 722, 965, 1001
HpaII CCGG 1 cut(s) 26
HphI GGTGA 3 cut(s) 132, 335, 383
Hpy166II GTNNAC 3 cut(s) 140, 751, 944
Hpy188I TCNGA 4 cut(s) 82, 334, 441, 609
Hpy188III TCNNGA 5 cut(s) 26, 194, 494, 511, 533
Hpy8I GTNNAC 3 cut(s) 140, 751, 944
HpyAV CCTTC 3 cut(s) 320, 640, 773
HpyCH4III ACNGT 3 cut(s) 437, 489, 841
HpyCH4V TGCA 9 cut(s) 89, 234, 242, 338, 867, 935, 950, 1031, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 649
HpyF3I CTNAG 1 cut(s) 440
Hsp92II CATG 5 cut(s) 93, 405, 704, 867, 950
HspAI GCGC 1 cut(s) 586
Kpn2I TCCGGA 1 cut(s) 25
Ksp22I TGATCA 3 cut(s) 282, 546, 604
Kzo9I GATC 8 cut(s) 282, 529, 546, 556, 604, 697, 833, 916
LguI GCTCTTC 1 cut(s) 426
LmnI GCTCC 1 cut(s) 649
Lsp1109I GCAGC 7 cut(s) 37, 73, 167, 879, 919, 962, 1030
LweI GCATC 4 cut(s) 221, 229, 325, 883
MaeIII GTNAC 5 cut(s) 62, 102, 671, 715, 998
MalI GATC 8 cut(s) 284, 531, 548, 558, 606, 699, 835, 918
MboI GATC 8 cut(s) 282, 529, 546, 556, 604, 697, 833, 916
MboII GAAGA 5 cut(s) 203, 260, 413, 421, 991
MluCI AATT 4 cut(s) 107, 219, 503, 567
MlyI GAGTC 2 cut(s) 31, 995
MnlI CCTC 6 cut(s) 22, 127, 376, 435, 469, 955
Mph1103I ATGCAT 1 cut(s) 236
MroI TCCGGA 1 cut(s) 25
MseI TTAA 3 cut(s) 149, 291, 414
MslI CAYNNNNRTG 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 678
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 299, 846
MvaI CCWGG 2 cut(s) 299, 846
MwoI GCNNNNNNNGC 2 cut(s) 56, 649
NdeI CATATG 2 cut(s) 274, 958
NdeII GATC 8 cut(s) 282, 529, 546, 556, 604, 697, 833, 916
NlaIII CATG 5 cut(s) 93, 405, 704, 867, 950
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 3 cut(s) 62, 102, 998
NsbI TGCGCA 1 cut(s) 587
NsiI ATGCAT 1 cut(s) 236
NspI RCATGY 4 cut(s) 93, 405, 867, 950
PaeI GCATGC 1 cut(s) 867
PaeR7I CTCGAG 1 cut(s) 480
PasI CCCWGGG 1 cut(s) 298
PceI AGGCCT 1 cut(s) 553
PciSI GCTCTTC 1 cut(s) 426
PfeI GAWTC 2 cut(s) 722, 965
PkrI GCNGC 7 cut(s) 52, 88, 157, 869, 934, 952, 1045
PleI GAGTC 2 cut(s) 31, 995
PpsI GAGTC 2 cut(s) 31, 995
PsiI TTATAA 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 297, 844
PspGI CCWGG 2 cut(s) 297, 844
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 4 cut(s) 313, 444, 851, 903
PspXI VCTCGAGB 1 cut(s) 480
PstI CTGCAG 1 cut(s) 1048
PstNI CAGNNNCTG 2 cut(s) 86, 845
PvuII CAGCTG 1 cut(s) 678
RsaI GTAC 4 cut(s) 5, 431, 486, 638
RsaNI GTAC 4 cut(s) 4, 430, 485, 637
RseI CAYNNNNRTG 1 cut(s) 94
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 3 cut(s) 149, 291, 414
SatI GCNGC 7 cut(s) 51, 87, 156, 868, 933, 951, 1044
Sau3AI GATC 8 cut(s) 282, 529, 546, 556, 604, 697, 833, 916
Sau96I GGNCC 4 cut(s) 313, 444, 851, 903
SchI GAGTC 2 cut(s) 31, 995
ScrFI CCNGG 2 cut(s) 299, 846
SfaNI GCATC 4 cut(s) 221, 229, 325, 883
SfcI CTRYAG 3 cut(s) 790, 882, 1044
Sfr274I CTCGAG 1 cut(s) 480
SinI GGWCC 3 cut(s) 313, 851, 903
SlaI CTCGAG 1 cut(s) 480
SmiMI CAYNNNNRTG 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
SphI GCATGC 1 cut(s) 867
Sse9I AATT 4 cut(s) 107, 219, 503, 567
SseBI AGGCCT 1 cut(s) 553
SspI AATATT 1 cut(s) 812
StuI AGGCCT 1 cut(s) 553
StyD4I CCNGG 2 cut(s) 297, 844
TaaI ACNGT 3 cut(s) 437, 489, 841
TaqI TCGA 3 cut(s) 455, 481, 836
TasI AATT 4 cut(s) 107, 219, 503, 567
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 2 cut(s) 722, 965
Tru1I TTAA 3 cut(s) 149, 291, 414
Tru9I TTAA 3 cut(s) 149, 291, 414
TscAI CASTG 2 cut(s) 18, 101
TseFI GTSAC 3 cut(s) 62, 102, 998
TseI GCWGC 7 cut(s) 50, 86, 155, 867, 932, 950, 1043
Tsp45I GTSAC 3 cut(s) 62, 102, 998
TspDTI ATGAA 4 cut(s) 413, 496, 536, 945
TspRI CASTG 2 cut(s) 18, 101
VpaK11BI GGWCC 3 cut(s) 313, 851, 903
XapI RAATTY 1 cut(s) 503
XceI RCATGY 4 cut(s) 93, 405, 867, 950
XhoI CTCGAG 1 cut(s) 480
XmiI GTMKAC 2 cut(s) 750, 943
Zsp2I ATGCAT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.