Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

25073577 .. 25078548

Gene Structure 4972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G019130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGAAAGCTATAAGTGATGATTGTGGAAGATTCATATCTTTGCCTCCTGGGCATTTGTACTCTAGCAAACAAGGAGGGCTGAGAAGGTGGTACAATCCACAATGGTTTTTGGAGAAGATACCATCGACTCCTTATGATCCCATTGTTTTACGCGAGGCTTTTGAGAAGGCTGTGTTAAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCTGGAGGATTGGACTCATTACTCGTTGCTTCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCACGTCAGTGGGGGTCACAATTACATACCTTTTGTGTTGGCTTGGAGGGTTCTCCAGATTTGAAAGCAGCAAGAGAAGTTGCAGATTATCTTGGAACTCATAATCACGAGTTTCACTTTACTGTTCAGGAAGGCATAGATGCACTTGAAGAAGTTATCTACCATATTGAGACATATGATGTGACCACTATCAGAGCCAGCACTCCAATGTTTCTTATGTCTCGTAAAATTAAATCTCTGGGAGCAAAAATGGTCCTTTCTGGTGAAGCTTCGGATGAAATCTTTGGTGGCTACTTTTATTTCCACAAGGCACCAAACAAGGAGGAGTTTCACCAAGAAACATGCCAGAAGATTAAAGGTCTTCATCTGTATGACTGTCTGAGGGCCAACAAATCGACATCAGCTTGGGGTGTTGAGGCTCGTGTACCGTTTCTTGACAAAGAATTTATCAAGACTGCTATGGACATTGATCCAGAATGGAAAATGATCACGCCTGATCTTGGAAGAATTGAGAAGTGGGTCTTAAGCAAAGCATTTGATGATGATCAGAAGCCATATTTACCAAAGCACATCTTGTACAGGCAGAAGGAGCAGTTTAGTGATGGTATCGGTTACAGCTGGATTGACGGGTTCAAAGATCATGCAAACAAACAAGTAACAGATTTGATGCTGATGAACGCAAGCTTTGTCTACCCTGAAAACACTCCAACTACAAAAGAAGGATACTACTATAGGACTATGTTTGAGAAATATTTTCCAAAAGAATGCTGCGAGATCAACAGTTCCTGGTGGTCCAAGTGTGGCATGCAGCACAGCAAAATCTGTGGAGTGGGATGCAGAATGGTCCAAGAACCCCGATTCATCTGGTCGTGCTGCACTTGGTATACATGCAGCTGCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

394

Amino Acids

45.31

Weight (kDa)

6.64

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	50 - 201	5.4e-48	Asparagine synthase
Asn_synthase	PF00733	198 - 355	9.4e-30	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	592
AccI	GTMKAC	2 cut(s)	972, 1166
AccII	CGCG	1 cut(s)	153
AclWI	GGATC	2 cut(s)	131, 746
AcsI	RAATTY	1 cut(s)	725
AfaI	GTAC	5 cut(s)	59, 92, 198, 708, 860
AfiI	CCNNNNNNNGG	1 cut(s)	782
AflII	CTTAAG	1 cut(s)	805
AgsI	TTSAA	3 cut(s)	346, 431, 916
AjiI	CACGTC	1 cut(s)	287
AjnI	CCWGG	2 cut(s)	46, 1067
AleI	CACNNNNGTG	1 cut(s)	289
AluBI	AGCT	7 cut(s)	8, 281, 551, 686, 900, 966, 1176
AluI	AGCT	7 cut(s)	8, 281, 551, 686, 900, 966, 1176
Alw26I	GTCTC	3 cut(s)	175, 446, 507
AlwI	GGATC	2 cut(s)	131, 746
AlwNI	CAGNNNCTG	2 cut(s)	281, 1068
AoxI	GGCC	1 cut(s)	666
ApeKI	GCWGC	7 cut(s)	281, 350, 1050, 1090, 1155, 1173, 1176
ApoI	RAATTY	1 cut(s)	725
AspS9I	GGNCC	4 cut(s)	535, 666, 1074, 1126
AsuHPI	GGTGA	2 cut(s)	557, 605
AvaII	GGWCC	3 cut(s)	535, 1074, 1126
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BanI	GGYRCC	1 cut(s)	592
BauI	CACGAG	2 cut(s)	389, 702
BbsI	GAAGAC	1 cut(s)	635
BbvI	GCAGC	6 cut(s)	268, 362, 1037, 1102, 1142, 1163
BccI	CCATC	2 cut(s)	130, 878
BciT130I	CCWGG	2 cut(s)	48, 1069
BciVI	GTATCC	1 cut(s)	998
BclI	TGATCA	2 cut(s)	768, 826
BcoDI	GTCTC	3 cut(s)	175, 446, 507
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	1012
BfrI	CTTAAG	1 cut(s)	805
BfuI	GTATCC	1 cut(s)	998
BglI	GCCNNNNNGGC	1 cut(s)	49
BisI	GCNGC	7 cut(s)	282, 351, 1051, 1091, 1156, 1174, 1177
BlsI	GCNGC	7 cut(s)	283, 352, 1052, 1092, 1157, 1175, 1178
Bme1390I	CCNGG	2 cut(s)	48, 1069
Bme18I	GGWCC	3 cut(s)	535, 1074, 1126
BmgBI	CACGTC	1 cut(s)	287
BmgT120I	GGNCC	4 cut(s)	535, 666, 1074, 1126
BmiI	GGNNCC	1 cut(s)	594
BmrFI	CCNGG	2 cut(s)	48, 1069
BmsI	GCATC	3 cut(s)	412, 939, 1106
BpiI	GAAGAC	1 cut(s)	635
BpmI	CTGGAG	2 cut(s)	240, 321
BsaBI	GATNNNNATC	2 cut(s)	34, 825
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	782
Bse8I	GATNNNNATC	2 cut(s)	34, 825
BseBI	CCWGG	2 cut(s)	48, 1069
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	2 cut(s)	562, 1121
BseJI	GATNNNNATC	2 cut(s)	34, 825
BseLI	CCNNNNNNNGG	1 cut(s)	782
BseMII	CTCAG	2 cut(s)	71, 653
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	6 cut(s)	268, 362, 1037, 1102, 1142, 1163
BsgI	GTGCAG	2 cut(s)	267, 1141
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	668
BshNI	GGYRCC	1 cut(s)	592
BslI	CCNNNNNNNGG	1 cut(s)	782
BsmAI	GTCTC	3 cut(s)	175, 446, 507
BsmI	GAATGC	1 cut(s)	1052
BsnI	GGCC	1 cut(s)	668
Bsp1407I	TGTACA	1 cut(s)	858
Bsp143I	GATC	7 cut(s)	136, 751, 768, 778, 826, 919, 1056
BspANI	GGCC	1 cut(s)	668
BspCNI	CTCAG	2 cut(s)	72, 654
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	594
BspPI	GGATC	2 cut(s)	131, 746
BspT107I	GGYRCC	1 cut(s)	592
BspTI	CTTAAG	1 cut(s)	805
BsrGI	TGTACA	1 cut(s)	858
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	7 cut(s)	136, 751, 768, 778, 826, 919, 1056
BssNAI	GTATAC	1 cut(s)	1167
BssSI	CACGAG	2 cut(s)	389, 702
Bst1107I	GTATAC	1 cut(s)	1167
Bst2BI	CACGAG	2 cut(s)	389, 702
Bst2UI	CCWGG	2 cut(s)	48, 1069
Bst4CI	ACNGT	4 cut(s)	406, 659, 711, 1064
BstAFI	CTTAAG	1 cut(s)	805
BstAUI	TGTACA	1 cut(s)	858
BstC8I	GCNNGC	3 cut(s)	481, 964, 1088
BstDEI	CTNAG	2 cut(s)	80, 662
BstF5I	GGATG	2 cut(s)	562, 1121
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	7 cut(s)	139, 754, 771, 781, 829, 922, 1059
BstMAI	GTCTC	3 cut(s)	175, 446, 507
BstMBI	GATC	7 cut(s)	136, 751, 768, 778, 826, 919, 1056
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 251, 871
BstNI	CCWGG	2 cut(s)	48, 1069
BstNSI	RCATGY	3 cut(s)	627, 1090, 1173
BstSCI	CCNGG	2 cut(s)	46, 1067
BstSFI	CTRYAG	1 cut(s)	1012
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	6 cut(s)	268, 362, 1037, 1102, 1142, 1163
BstV2I	GAAGAC	1 cut(s)	635
BstZ17I	GTATAC	1 cut(s)	1167
BsuI	GTATCC	1 cut(s)	998
BsuRI	GGCC	1 cut(s)	668
BtrI	CACGTC	1 cut(s)	287
BtsCI	GGATG	2 cut(s)	562, 1121
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	3 cut(s)	481, 964, 1088
CaiI	CAGNNNCTG	2 cut(s)	281, 1068
Cfr13I	GGNCC	4 cut(s)	535, 666, 1074, 1126
Csp6I	GTAC	5 cut(s)	58, 91, 197, 707, 859
CspCI	CAANNNNNGTGG	2 cut(s)	1087, 1122
CviAII	CATG	4 cut(s)	624, 923, 1087, 1170
CviQI	GTAC	5 cut(s)	58, 91, 197, 707, 859
DdeI	CTNAG	2 cut(s)	80, 662
DpnI	GATC	7 cut(s)	138, 753, 770, 780, 828, 921, 1058
DpnII	GATC	7 cut(s)	136, 751, 768, 778, 826, 919, 1056
Eco47I	GGWCC	3 cut(s)	535, 1074, 1126
EcoRII	CCWGG	2 cut(s)	46, 1067
FaeI	CATG	4 cut(s)	627, 926, 1090, 1173
FalI	AAGNNNNNCTT	4 cut(s)	788, 820, 839, 871
FatI	CATG	4 cut(s)	623, 922, 1086, 1169
FauNDI	CATATG	1 cut(s)	457
FbaI	TGATCA	2 cut(s)	768, 826
FblI	GTMKAC	2 cut(s)	972, 1166
Fnu4HI	GCNGC	7 cut(s)	282, 351, 1051, 1091, 1156, 1174, 1177
FokI	GGATG	2 cut(s)	569, 1128
Fsp4HI	GCNGC	7 cut(s)	282, 351, 1051, 1091, 1156, 1174, 1177
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	7 cut(s)	282, 351, 1051, 1091, 1156, 1174, 1177
GsuI	CTGGAG	2 cut(s)	240, 321
HaeIII	GGCC	1 cut(s)	668
Hin1II	CATG	4 cut(s)	627, 926, 1090, 1173
HindIII	AAGCTT	2 cut(s)	549, 964
HinfI	GANTC	4 cut(s)	30, 127, 230, 1140
HphI	GGTGA	2 cut(s)	557, 605
Hpy166II	GTNNAC	3 cut(s)	707, 973, 1167
Hpy188I	TCNGA	5 cut(s)	277, 476, 556, 663, 831
Hpy188III	TCNNGA	7 cut(s)	219, 338, 389, 410, 716, 733, 755
Hpy8I	GTNNAC	3 cut(s)	707, 973, 1167
HpyAV	CCTTC	5 cut(s)	78, 160, 407, 862, 995
HpyCH4III	ACNGT	4 cut(s)	406, 659, 711, 1064
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	8 cut(s)	284, 365, 425, 926, 1090, 1119, 1158, 1173
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 251, 871
HpyF3I	CTNAG	2 cut(s)	80, 662
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	4 cut(s)	627, 926, 1090, 1173
Ksp22I	TGATCA	2 cut(s)	768, 826
Kzo9I	GATC	7 cut(s)	136, 751, 768, 778, 826, 919, 1056
LmnI	GCTCC	2 cut(s)	524, 871
Lsp1109I	GCAGC	6 cut(s)	268, 362, 1037, 1102, 1142, 1163
LweI	GCATC	3 cut(s)	412, 939, 1106
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	4 cut(s)	297, 463, 893, 937
MalI	GATC	7 cut(s)	138, 753, 770, 780, 828, 921, 1058
MboI	GATC	7 cut(s)	136, 751, 768, 778, 826, 919, 1056
MboII	GAAGA	6 cut(s)	39, 127, 443, 635, 643, 798
MluCI	AATT	4 cut(s)	302, 510, 725, 789
MlyI	GAGTC	2 cut(s)	121, 224
MmeI	TCCRAC	1 cut(s)	1013
MnlI	CCTC	8 cut(s)	54, 68, 148, 215, 322, 598, 657, 691
MseI	TTAA	4 cut(s)	176, 513, 636, 806
MslI	CAYNNNNRTG	3 cut(s)	289, 488, 651
MspA1I	CMGCKG	2 cut(s)	900, 1176
MspCI	CTTAAG	1 cut(s)	805
MspR9I	CCNGG	2 cut(s)	48, 1069
Mva1269I	GAATGC	1 cut(s)	1052
MvaI	CCWGG	2 cut(s)	48, 1069
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	3 cut(s)	49, 251, 871
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	7 cut(s)	136, 751, 768, 778, 826, 919, 1056
NlaIII	CATG	4 cut(s)	627, 926, 1090, 1173
NlaIV	GGNNCC	1 cut(s)	594
NmuCI	GTSAC	2 cut(s)	297, 463
NspI	RCATGY	3 cut(s)	627, 1090, 1173
OliI	CACNNNNGTG	1 cut(s)	289
PaeI	GCATGC	1 cut(s)	1090
PctI	GAATGC	1 cut(s)	1052
PfeI	GAWTC	2 cut(s)	30, 1140
PkrI	GCNGC	7 cut(s)	283, 352, 1052, 1092, 1157, 1175, 1178
PleI	GAGTC	2 cut(s)	121, 224
PpsI	GAGTC	2 cut(s)	121, 224
Psp6I	CCWGG	2 cut(s)	46, 1067
PspGI	CCWGG	2 cut(s)	46, 1067
PspN4I	GGNNCC	1 cut(s)	594
PspPI	GGNCC	4 cut(s)	535, 666, 1074, 1126
PstNI	CAGNNNCTG	2 cut(s)	281, 1068
PvuII	CAGCTG	2 cut(s)	900, 1176
RsaI	GTAC	5 cut(s)	59, 92, 198, 708, 860
RsaNI	GTAC	5 cut(s)	58, 91, 197, 707, 859
RseI	CAYNNNNRTG	3 cut(s)	289, 488, 651
SaqAI	TTAA	4 cut(s)	176, 513, 636, 806
SatI	GCNGC	7 cut(s)	282, 351, 1051, 1091, 1156, 1174, 1177
Sau3AI	GATC	7 cut(s)	136, 751, 768, 778, 826, 919, 1056
Sau96I	GGNCC	4 cut(s)	535, 666, 1074, 1126
SchI	GAGTC	2 cut(s)	121, 224
ScrFI	CCNGG	2 cut(s)	48, 1069
SfaNI	GCATC	3 cut(s)	412, 939, 1106
SfcI	CTRYAG	1 cut(s)	1012
SinI	GGWCC	3 cut(s)	535, 1074, 1126
SmiMI	CAYNNNNRTG	3 cut(s)	289, 488, 651
SmlI	CTYRAG	1 cut(s)	805
SmoI	CTYRAG	1 cut(s)	805
SphI	GCATGC	1 cut(s)	1090
Sse9I	AATT	4 cut(s)	302, 510, 725, 789
SspI	AATATT	1 cut(s)	1034
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	46, 1067
TaaI	ACNGT	4 cut(s)	406, 659, 711, 1064
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	2 cut(s)	125, 677
TasI	AATT	4 cut(s)	302, 510, 725, 789
TatI	WGTACW	2 cut(s)	57, 858
TfiI	GAWTC	2 cut(s)	30, 1140
Tru1I	TTAA	4 cut(s)	176, 513, 636, 806
Tru9I	TTAA	4 cut(s)	176, 513, 636, 806
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	2 cut(s)	297, 463
TseI	GCWGC	7 cut(s)	281, 350, 1050, 1090, 1155, 1173, 1176
Tsp45I	GTSAC	2 cut(s)	297, 463
TspDTI	ATGAA	6 cut(s)	17, 22, 573, 635, 971, 1132
TspRI	CASTG	1 cut(s)	296
Vha464I	CTTAAG	1 cut(s)	805
VpaK11BI	GGWCC	3 cut(s)	535, 1074, 1126
XapI	RAATTY	1 cut(s)	725
XceI	RCATGY	3 cut(s)	627, 1090, 1173
XmiI	GTMKAC	2 cut(s)	972, 1166
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.