Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Reverse (-)

25675212 .. 25687895

Gene Structure 12684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G019420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAAGCTATAAGTGATGATTGTGAAAGATTCATATCTTTTCCTCCTGGGCATTTATACTCTAGCAAACAAGGAGGGCTGAGAAGGTGGTACAATCCACAATGGTTTTTGGAGAAGATACCATCGACTCCTTATGATCCCATTGTTTTACGCGTGGCTTTTGAGAAGGATCCTCTCCCACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCCAGAGGATTGGACTCATCACTCGTTGCTGATGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCACGTCAGTGGGGGTCACAATTACATACCTTTTGTGTTGGCTTGGAGCACAACACGTCCTTCACTCTTCGAGATCGATCATGTAGACATCATTCCTCCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

127

Amino Acids

14.45

Weight (kDa)

8.42

Isoelectric Point (pI)

59.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	61 - 110	8.6e-09	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	1 cut(s)	153
AclWI	GGATC	3 cut(s)	131, 164, 177
AfaI	GTAC	2 cut(s)	92, 195
AflIII	ACRYGT	2 cut(s)	151, 333
AjiI	CACGTC	2 cut(s)	284, 336
AjnI	CCWGG	1 cut(s)	46
AleI	CACNNNNGTG	1 cut(s)	286
AluBI	AGCT	2 cut(s)	8, 278
AluI	AGCT	2 cut(s)	8, 278
Alw21I	GWGCWC	1 cut(s)	330
AlwI	GGATC	3 cut(s)	131, 164, 177
AlwNI	CAGNNNCTG	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	278
BaeI	ACNNNNGTAYC	2 cut(s)	177, 210
BamHI	GGATCC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	48
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	48
BmgBI	CACGTC	2 cut(s)	284, 336
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	48
Bsa29I	ATCGAT	1 cut(s)	355
BsaBI	GATNNNNATC	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	47
Bse8I	GATNNNNATC	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	48
BseCI	ATCGAT	1 cut(s)	355
BseDI	CCNNGG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	265
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	4 cut(s)	136, 169, 352, 356
BspCNI	CTCAG	1 cut(s)	72
BspDI	ATCGAT	1 cut(s)	355
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	3 cut(s)	131, 164, 177
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	4 cut(s)	136, 169, 352, 356
Bst2UI	CCWGG	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	4 cut(s)	139, 172, 355, 359
BstMBI	GATC	4 cut(s)	136, 169, 352, 356
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	169
Bsu15I	ATCGAT	1 cut(s)	355
BsuTUI	ATCGAT	1 cut(s)	355
BtrI	CACGTC	2 cut(s)	284, 336
BtsIMutI	CAGTG	1 cut(s)	293
CaiI	CAGNNNCTG	1 cut(s)	278
ClaI	ATCGAT	1 cut(s)	355
Csp6I	GTAC	2 cut(s)	91, 194
CviAII	CATG	1 cut(s)	360
CviJI	RGCY	7 cut(s)	8, 79, 158, 251, 266, 278, 321
CviKI_1	RGCY	7 cut(s)	8, 79, 158, 251, 266, 278, 321
CviQI	GTAC	2 cut(s)	91, 194
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	4 cut(s)	138, 171, 354, 358
DpnII	GATC	4 cut(s)	136, 169, 352, 356
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	46
FaeI	CATG	1 cut(s)	363
FaiI	YATR	7 cut(s)	11, 35, 58, 135, 185, 306, 361
FatI	CATG	1 cut(s)	359
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	1 cut(s)	279
Hin1II	CATG	1 cut(s)	363
HinfI	GANTC	3 cut(s)	30, 127, 227
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	2 cut(s)	216, 350
Hpy8I	GTNNAC	1 cut(s)	365
HpyAV	CCTTC	3 cut(s)	78, 160, 349
HpyCH4IV	ACGT	2 cut(s)	283, 335
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	2 cut(s)	283, 335
Hsp92II	CATG	1 cut(s)	363
Kzo9I	GATC	4 cut(s)	136, 169, 352, 356
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	3 cut(s)	33, 60, 229
Lsp1109I	GCAGC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	2 cut(s)	283, 335
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	4 cut(s)	138, 171, 354, 358
MboI	GATC	4 cut(s)	136, 169, 352, 356
MboII	GAAGA	2 cut(s)	127, 338
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	1 cut(s)	299
MluI	ACGCGT	1 cut(s)	151
MlyI	GAGTC	2 cut(s)	121, 221
MnlI	CCTC	4 cut(s)	54, 68, 183, 212
MslI	CAYNNNNRTG	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	4 cut(s)	136, 169, 352, 356
NlaIII	CATG	1 cut(s)	363
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	294
OliI	CACNNNNGTG	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	2 cut(s)	121, 221
PpsI	GAGTC	2 cut(s)	121, 221
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	171
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	2 cut(s)	92, 195
RsaNI	GTAC	2 cut(s)	91, 194
RseI	CAYNNNNRTG	1 cut(s)	286
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	4 cut(s)	136, 169, 352, 356
SchI	GAGTC	2 cut(s)	121, 221
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	6 cut(s)	10, 89, 280, 286, 311, 338
SmiMI	CAYNNNNRTG	1 cut(s)	286
Sse9I	AATT	1 cut(s)	299
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	46
TaiI	ACGT	2 cut(s)	286, 338
TaqI	TCGA	3 cut(s)	125, 349, 355
TasI	AATT	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	30
TscAI	CASTG	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	294
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	2 cut(s)	17, 22
TspRI	CASTG	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.