Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

26534620 .. 26536212

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG253800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCGCTTGATACTGGGAGTGACCTGTTTTGGGTGTCTTGTGAAGGAACAGCTTATGCTCCTAATTTCGAGGTCAGCAAATATGACCCCAAAGGGTCATCGACTAGCAAGAAAGTCCGTTGCAGCGTAATAAATGTCTGGGAGCATTCAACACTTGCCCTTATAGGGACCAAGAATGTTATCAAACTAGTATACAACATGTGCTTGAAGACATATACAATTAGTACGCAGTTCAGGCAAAATAAAAGACAGCACCAACAACAAATTCCAGCATCCTCTAACTCTTCTCCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba TAXi_C TAXi_N

Protein Analysis

98

Amino Acids

11.01

Weight (kDa)

9.3

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	1 - 43	4.3e-06	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	264
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	2 cut(s)	31, 165
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	150, 208
AhlI	ACTAGT	1 cut(s)	187
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	135
BcuI	ACTAGT	1 cut(s)	187
BfaI	CTAG	2 cut(s)	105, 188
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	169
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	281
BmuI	ACTGGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 165
Bse1I	ACTGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	2 cut(s)	31, 165
BseNI	ACTGG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	2 cut(s)	31, 165
BsmFI	GGGAC	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	19
BssNAI	GTATAC	1 cut(s)	193
Bst1107I	GTATAC	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	272
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	215
BstZ17I	GTATAC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	272
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	1 cut(s)	53
CviKI_1	RGCY	1 cut(s)	53
CviQI	GTAC	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	168
FaeI	CATG	1 cut(s)	202
FaiI	YATR	7 cut(s)	57, 84, 164, 193, 200, 214, 216
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	124
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	1 cut(s)	124
FspBI	CTAG	2 cut(s)	105, 188
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	124
HaeII	RGCGCY	1 cut(s)	8
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	193
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	1 cut(s)	5
LmnI	GCTCC	2 cut(s)	64, 142
LpnPI	CCDG	4 cut(s)	38, 124, 220, 282
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	2 cut(s)	105, 188
MaeIII	GTNAC	1 cut(s)	20
MboII	GAAGA	2 cut(s)	220, 276
MluCI	AATT	3 cut(s)	64, 219, 264
MnlI	CCTC	2 cut(s)	64, 286
Mva1269I	GAATGC	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	20
NspI	RCATGY	1 cut(s)	202
PciI	ACATGT	1 cut(s)	198
PctI	GAATGC	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	125
PscI	ACATGT	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	168
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
SatI	GCNGC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	168
SetI	ASST	3 cut(s)	27, 55, 75
SfaNI	GCATC	1 cut(s)	281
SinI	GGWCC	1 cut(s)	168
SpeI	ACTAGT	1 cut(s)	187
Sse9I	AATT	3 cut(s)	64, 219, 264
SspMI	CTAG	2 cut(s)	105, 188
TaqI	TCGA	2 cut(s)	69, 101
TasI	AATT	3 cut(s)	64, 219, 264
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	264
XceI	RCATGY	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	2 cut(s)	105, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.