Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

26177893 .. 26180048

Gene Structure 2156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48743

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCCTTGCATTTTCAATCTTCAGGGTTCTCCAGATTTGAAAGCAGCAAGAGAAGTTGCAGATTATCTTGGAACTCATCATCACGAGTTTCACTTTACTGTTCAGGCGCTTGAAGAAGTTATCTACCATATCGAGACATATGATGTGACCACTATCATAGCCAGCATTCCAATGTTTCTTATGTCTCGTAAAATTAAATCTCTGGGAGTAAAAATGGTTCTTTCTGGAGAAGGTTCAGATGAAATCTTTGGTGGCTACTTGTATTTCCACAAGCCACCAAACAAGGAGGAGTTTCACCAAGAAACATACCAGAAGATCAAAGCTCTTCATCTGTACAACTGTCTGAGGGCCACCAAATCGACTTCAGCTTGGGGTGTTGAGGCTCATGTACCATTTCTCGACAAAGAATTCATCAAGACTGCTATGAACACTGATCCAGAATGGAAAATGATCAGGCCTGATCTTGGGAGGATTGATAAGTGGGTCTTACGCAAAGCATTTGATGATGATCAGAAACCATATTTACCAAAGCACTTCTTGTACAGGCAGAAGGAGCAGTTTAGTGATGGTGTCGGTTACAGCTGGATTGACAGCTTGAAAGATCACGCCAACAAACAAATTCAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

209

Amino Acids

24.36

Weight (kDa)

6.59

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	8 - 95	6.8e-26	Asparagine synthase
Asn_synthase	PF00733	92 - 207	4.7e-27	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	2 cut(s)	407, 618
AcuI	CTGAAG	2 cut(s)	5, 348
AfaI	GTAC	3 cut(s)	335, 390, 542
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgsI	TTSAA	5 cut(s)	16, 40, 113, 598, 623
AluBI	AGCT	4 cut(s)	323, 368, 582, 594
AluI	AGCT	4 cut(s)	323, 368, 582, 594
Alw26I	GTCTC	2 cut(s)	128, 189
AlwI	GGATC	1 cut(s)	428
AoxI	GGCC	2 cut(s)	348, 455
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	2 cut(s)	407, 618
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	287
BauI	CACGAG	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	1 cut(s)	560
BclI	TGATCA	2 cut(s)	450, 508
BcoDI	GTCTC	2 cut(s)	128, 189
BfoI	RGCGCY	1 cut(s)	110
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	348
BpmI	CTGGAG	2 cut(s)	15, 246
BsaBI	GATNNNNATC	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse8I	GATNNNNATC	1 cut(s)	507
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMII	CTCAG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	56
BshFI	GGCC	2 cut(s)	350, 457
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	2 cut(s)	128, 189
BsmI	GAATGC	1 cut(s)	165
BsnI	GGCC	2 cut(s)	350, 457
Bsp1407I	TGTACA	2 cut(s)	333, 540
Bsp143I	GATC	6 cut(s)	315, 433, 450, 460, 508, 601
BspANI	GGCC	2 cut(s)	350, 457
BspCNI	CTCAG	1 cut(s)	336
BspPI	GGATC	1 cut(s)	428
BspQI	GCTCTTC	1 cut(s)	330
BsrGI	TGTACA	2 cut(s)	333, 540
BssMI	GATC	6 cut(s)	315, 433, 450, 460, 508, 601
BssSI	CACGAG	1 cut(s)	83
Bst2BI	CACGAG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	100, 341
Bst6I	CTCTTC	1 cut(s)	330
BstAUI	TGTACA	2 cut(s)	333, 540
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	344
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	6 cut(s)	318, 436, 453, 463, 511, 604
BstMAI	GTCTC	2 cut(s)	128, 189
BstMBI	GATC	6 cut(s)	315, 433, 450, 460, 508, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstV1I	GCAGC	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	350, 457
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	348
Csp6I	GTAC	3 cut(s)	334, 389, 541
CviAII	CATG	1 cut(s)	386
CviQI	GTAC	3 cut(s)	334, 389, 541
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	6 cut(s)	317, 435, 452, 462, 510, 603
DpnII	GATC	6 cut(s)	315, 433, 450, 460, 508, 601
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco147I	AGGCCT	1 cut(s)	457
Eco57I	CTGAAG	2 cut(s)	5, 348
EcoRI	GAATTC	1 cut(s)	407
FaeI	CATG	1 cut(s)	389
FaiI	YATR	9 cut(s)	129, 139, 141, 158, 182, 307, 387, 425, 520
FalI	AAGNNNNNCTT	4 cut(s)	470, 502, 521, 553
FatI	CATG	1 cut(s)	385
FauNDI	CATATG	1 cut(s)	139
FbaI	TGATCA	2 cut(s)	450, 508
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	45
GsuI	CTGGAG	2 cut(s)	15, 246
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	350, 457
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	3 cut(s)	238, 345, 513
Hpy188III	TCNNGA	7 cut(s)	32, 83, 133, 225, 398, 415, 437
HpyAV	CCTTC	2 cut(s)	224, 544
HpyCH4III	ACNGT	2 cut(s)	100, 341
HpyCH4V	TGCA	2 cut(s)	9, 59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
HpyF3I	CTNAG	1 cut(s)	344
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	1 cut(s)	107
Ksp22I	TGATCA	2 cut(s)	450, 508
Kzo9I	GATC	6 cut(s)	315, 433, 450, 460, 508, 601
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	145, 575
MalI	GATC	6 cut(s)	317, 435, 452, 462, 510, 603
MboI	GATC	6 cut(s)	315, 433, 450, 460, 508, 601
MboII	GAAGA	4 cut(s)	11, 125, 317, 325
MluCI	AATT	3 cut(s)	192, 407, 618
MnlI	CCTC	4 cut(s)	280, 339, 373, 462
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	553
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	6 cut(s)	315, 433, 450, 460, 508, 601
NlaIII	CATG	1 cut(s)	389
NmuCI	GTSAC	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	330
PctI	GAATGC	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	348
PsrI	GAACNNNNNNTAC	2 cut(s)	201, 233
PvuII	CAGCTG	1 cut(s)	582
RsaI	GTAC	3 cut(s)	335, 390, 542
RsaNI	GTAC	3 cut(s)	334, 389, 541
RseI	CAYNNNNRTG	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	6 cut(s)	315, 433, 450, 460, 508, 601
Sau96I	GGNCC	1 cut(s)	348
SetI	ASST	5 cut(s)	235, 325, 370, 584, 596
SmiMI	CAYNNNNRTG	1 cut(s)	170
Sse9I	AATT	3 cut(s)	192, 407, 618
SseBI	AGGCCT	1 cut(s)	457
StuI	AGGCCT	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	100, 341
TaqI	TCGA	3 cut(s)	132, 359, 399
TasI	AATT	3 cut(s)	192, 407, 618
TatI	WGTACW	2 cut(s)	333, 540
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	4 cut(s)	255, 317, 400, 440
TspRI	CASTG	1 cut(s)	436
XapI	RAATTY	2 cut(s)	407, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.