Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

27155092 .. 27168744

Gene Structure 13653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG245300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAACCTCAAAACACGTGTACCCCAAATGTAAGAGTAAAAGGAAGCGAGGGTAGTCCTTCAAATGGGAAAGACTGGGCATTCAAGAGAGACAACTCTCAGGCCAAGCGGTCTCGCATTATCGAACTCTCGCGCCGGTTGCGGCATCGCGGTCCTGATTGGAGCGGGTTGCATTGCCATGGGGATTGTTGCCTTGCTCATCAGCGATTGGCTATTATGGACCCTGCCTCAGGAGATCAGCCACTCTACAACGAGGACAAGACCGTCATTGTCACGGTTAATGGTGAGATATATAACCACAAGCAGTTGAGAGAAACATTGAAGGGTCATCAATTCCGAACTGGCAGTGACTGTGAAGTGATAGCACATCTTTACGAGGAACATGAGGAAGAATTTGTTGACATGCTGGACGGGATGTTCTCCTTTGTCCTCCTTGATACAAGGGACAACACTTTCACGGCGGCTCGAGATGCTATTGGCATTACCCCACTAGCCATTTGCAATATGAAGGTTTCACCGGCTGTTATATATGACCAACTATTGAAAGATTCAAACTTGGATAGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

189

Amino Acids

21.34

Weight (kDa)

5.73

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_6	PF13522	52 - 166	5.9e-33	Glutamine amidotransferase domain
GATase_7	PF13537	67 - 169	2.4e-36	Glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccBSI	CCGCTC	1 cut(s)	165
AccII	CGCG	2 cut(s)	133, 150
AciI	CCGC	5 cut(s)	109, 142, 150, 165, 461
AcsI	RAATTY	1 cut(s)	392
AcvI	CACGTG	1 cut(s)	18
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	2 cut(s)	65, 230
AflIII	ACRYGT	2 cut(s)	15, 17
AgsI	TTSAA	5 cut(s)	63, 85, 322, 544, 552
AloI	GAACNNNNNNTCC	2 cut(s)	401, 433
Alw26I	GTCTC	2 cut(s)	84, 117
AlwNI	CAGNNNCTG	1 cut(s)	351
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	152, 220
AsuHPI	GGTGA	2 cut(s)	296, 507
AvaI	CYCGRG	1 cut(s)	465
AvaII	GGWCC	2 cut(s)	152, 220
AxyI	CCTNAGG	1 cut(s)	229
BaeI	ACNNNNGTAYC	1 cut(s)	37
BbrPI	CACGTG	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	474
BcoDI	GTCTC	2 cut(s)	84, 117
BfaI	CTAG	1 cut(s)	491
BisI	GCNGC	2 cut(s)	143, 462
BlsI	GCNGC	2 cut(s)	144, 463
Bme18I	GGWCC	2 cut(s)	152, 220
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	2 cut(s)	152, 220
BmiI	GGNNCC	2 cut(s)	6, 222
BmrI	ACTGGG	1 cut(s)	85
BmsI	GCATC	2 cut(s)	154, 460
BmuI	ACTGGG	1 cut(s)	85
BsaAI	YACGTR	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 230
Bse118I	RCCGGY	2 cut(s)	135, 517
Bse1I	ACTGG	2 cut(s)	80, 346
Bse21I	CCTNAGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	420
BseLI	CCNNNNNNNGG	2 cut(s)	65, 230
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	113, 243
BseNI	ACTGG	2 cut(s)	80, 346
Bsh1236I	CGCG	2 cut(s)	133, 150
BshFI	GGCC	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	136, 518
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	2 cut(s)	65, 230
BsmAI	GTCTC	2 cut(s)	84, 117
BsmFI	GGGAC	1 cut(s)	458
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	104
Bso31I	GGTCTC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	465
Bsp143I	GATC	1 cut(s)	235
Bsp19I	CCATGG	1 cut(s)	178
BspACI	CCGC	5 cut(s)	109, 142, 150, 165, 461
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	2 cut(s)	112, 242
BspFNI	CGCG	2 cut(s)	133, 150
BspLI	GGNNCC	2 cut(s)	6, 222
BspTNI	GGTCTC	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	172
BsrFI	RCCGGY	2 cut(s)	135, 517
BsrI	ACTGG	2 cut(s)	80, 346
BssAI	RCCGGY	2 cut(s)	135, 517
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	178
Bst4CI	ACNGT	3 cut(s)	265, 277, 353
BstBAI	YACGTR	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	99, 229
BstDSI	CCRYGG	1 cut(s)	178
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	420
BstFNI	CGCG	2 cut(s)	133, 150
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	2 cut(s)	84, 117
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 470
BstNSI	RCATGY	1 cut(s)	406
BstUI	CGCG	2 cut(s)	133, 150
Bsu36I	CCTNAGG	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	178
BtgZI	GCGATG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	420
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	352
CaiI	CAGNNNCTG	1 cut(s)	351
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	2 cut(s)	135, 517
Cfr13I	GGNCC	2 cut(s)	152, 220
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	3 cut(s)	179, 383, 403
CviJI	RGCY	6 cut(s)	104, 212, 241, 464, 494, 521
CviKI_1	RGCY	6 cut(s)	104, 212, 241, 464, 494, 521
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	2 cut(s)	99, 229
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	152, 220
Eco72I	CACGTG	1 cut(s)	18
Eco81I	CCTNAGG	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	465
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	3 cut(s)	182, 386, 406
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	3 cut(s)	178, 382, 402
FauI	CCCGC	1 cut(s)	158
Fnu4HI	GCNGC	2 cut(s)	143, 462
FokI	GGATG	1 cut(s)	427
Fsp4HI	GCNGC	2 cut(s)	143, 462
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	2 cut(s)	143, 462
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	2 cut(s)	136, 518
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	3 cut(s)	182, 386, 406
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	1 cut(s)	548
HpaII	CCGG	2 cut(s)	136, 518
HphI	GGTGA	2 cut(s)	296, 507
Hpy166II	GTNNAC	2 cut(s)	21, 400
Hpy188I	TCNGA	1 cut(s)	338
Hpy188III	TCNNGA	4 cut(s)	85, 155, 231, 467
Hpy8I	GTNNAC	2 cut(s)	21, 400
HpyAV	CCTTC	3 cut(s)	69, 316, 502
HpyCH4III	ACNGT	3 cut(s)	265, 277, 353
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	172, 501
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 470
HpyF3I	CTNAG	2 cut(s)	99, 229
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	182, 386, 406
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	162
LpnPI	CCDG	9 cut(s)	61, 86, 149, 168, 216, 237, 327, 392, 531
LweI	GCATC	2 cut(s)	154, 460
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	271, 347
MalI	GATC	1 cut(s)	237
MbiI	CCGCTC	1 cut(s)	165
MboI	GATC	1 cut(s)	235
MboII	GAAGA	1 cut(s)	401
MfeI	CAATTG	1 cut(s)	565
MluCI	AATT	3 cut(s)	332, 392, 565
MnlI	CCTC	7 cut(s)	18, 43, 238, 247, 370, 379, 440
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	2 cut(s)	136, 518
MunI	CAATTG	1 cut(s)	565
Mva1269I	GAATGC	1 cut(s)	80
MvnI	CGCG	2 cut(s)	133, 150
MwoI	GCNNNNNNNGC	2 cut(s)	139, 470
NcoI	CCATGG	1 cut(s)	178
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	3 cut(s)	182, 386, 406
NlaIV	GGNNCC	2 cut(s)	6, 222
NmuCI	GTSAC	2 cut(s)	271, 347
NspI	RCATGY	1 cut(s)	406
PaeR7I	CTCGAG	1 cut(s)	465
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	548
PkrI	GCNGC	2 cut(s)	144, 463
PmaCI	CACGTG	1 cut(s)	18
PmlI	CACGTG	1 cut(s)	18
Ppu21I	YACGTR	1 cut(s)	18
PspCI	CACGTG	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	6, 222
PspPI	GGNCC	2 cut(s)	152, 220
PstNI	CAGNNNCTG	1 cut(s)	351
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	2 cut(s)	143, 462
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	2 cut(s)	152, 220
SetI	ASST	3 cut(s)	10, 20, 513
SfaNI	GCATC	2 cut(s)	154, 460
Sfr274I	CTCGAG	1 cut(s)	465
SinI	GGWCC	2 cut(s)	152, 220
SlaI	CTCGAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
Sse9I	AATT	3 cut(s)	332, 392, 565
SsiI	CCGC	5 cut(s)	109, 142, 150, 165, 461
SspMI	CTAG	1 cut(s)	491
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	3 cut(s)	265, 277, 353
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	123, 466
TasI	AATT	3 cut(s)	332, 392, 565
TauI	GCSGC	2 cut(s)	145, 464
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	2 cut(s)	271, 347
Tsp45I	GTSAC	2 cut(s)	271, 347
TspDTI	ATGAA	1 cut(s)	521
TspRI	CASTG	1 cut(s)	352
VpaK11BI	GGWCC	2 cut(s)	152, 220
XagI	CCTNNNNNAGG	1 cut(s)	228
XapI	RAATTY	1 cut(s)	392
XceI	RCATGY	1 cut(s)	406
XhoI	CTCGAG	1 cut(s)	465
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.