RchiOBHm_Chr2g0114081

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
26160478 .. 26161510
1033 bp
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UTR
Exon/CDS
Intron
PRQ48737

Sequence Viewer

Length: 285 bp
ATGTACCATTCGGTGTTCTTTTGTCCGAAGGGTTGGACTCATCACTCGTTGCTGCTGTGGCTTGTCGCTATTTGGCTTAATCAGAAGCTGCAAGTCAGTGGGGGTCACAGTTACATACCTTTTGCATTGGCTTGGAGTCTTCAAGGTTCTCCAGATTTGAAAGCAGCAAAAGAAGTTGCAGATTATCTTGGAACTCATCATCACGAGTTTCACTTTACTGTTCATGTAATATATAAGGCTCAAGGGTGGAGATTAGGTTTTCTTAGATTTAGAATTCAGGCATAG

Protein Analysis

94

Amino Acids

10.94

Weight (kDa)

9.52

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 273
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 2 cut(s) 143, 160
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
AlwNI CAGNNNCTG 1 cut(s) 88
ApeKI GCWGC 3 cut(s) 52, 88, 164
ApoI RAATTY 1 cut(s) 273
BauI CACGAG 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 131
BbvI GCAGC 3 cut(s) 39, 75, 176
BisI GCNGC 3 cut(s) 53, 89, 165
BlsI GCNGC 3 cut(s) 54, 90, 166
BpiI GAAGAC 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 225
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
BseXI GCAGC 3 cut(s) 39, 75, 176
BssSI CACGAG 1 cut(s) 203
Bst2BI CACGAG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 110, 220
BstDEI CTNAG 1 cut(s) 263
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstV1I GCAGC 3 cut(s) 39, 75, 176
BstV2I GAAGAC 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 103
CaiI CAGNNNCTG 1 cut(s) 88
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 224
CviJI RGCY 5 cut(s) 61, 76, 88, 131, 239
CviKI_1 RGCY 5 cut(s) 61, 76, 88, 131, 239
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 273
FaeI CATG 1 cut(s) 227
FaiI YATR 5 cut(s) 116, 225, 232, 234, 283
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 3 cut(s) 53, 89, 165
Fsp4HI GCNGC 3 cut(s) 53, 89, 165
GluI GCNGC 3 cut(s) 53, 89, 165
GsuI CTGGAG 1 cut(s) 135
Hin1II CATG 1 cut(s) 227
HinfI GANTC 2 cut(s) 37, 136
Hpy188I TCNGA 2 cut(s) 27, 84
Hpy188III TCNNGA 2 cut(s) 152, 203
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 110, 220
HpyCH4V TGCA 3 cut(s) 91, 125, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 263
Hsp92II CATG 1 cut(s) 227
LpnPI CCDG 2 cut(s) 165, 263
Lsp1109I GCAGC 3 cut(s) 39, 75, 176
MaeIII GTNAC 2 cut(s) 104, 110
MboII GAAGA 1 cut(s) 131
MluCI AATT 1 cut(s) 273
MlyI GAGTC 2 cut(s) 31, 145
MmeI TCCRAC 1 cut(s) 14
MseI TTAA 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 58
NlaIII CATG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 104
PkrI GCNGC 3 cut(s) 54, 90, 166
PleI GAGTC 2 cut(s) 31, 144
PpsI GAGTC 2 cut(s) 31, 144
PstNI CAGNNNCTG 1 cut(s) 88
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 3 cut(s) 53, 89, 165
SchI GAGTC 2 cut(s) 31, 145
SetI ASST 4 cut(s) 90, 121, 148, 259
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
Sse9I AATT 1 cut(s) 273
TaaI ACNGT 2 cut(s) 110, 220
TasI AATT 1 cut(s) 273
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 3 cut(s) 52, 88, 164
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 212
TspRI CASTG 1 cut(s) 103
XapI RAATTY 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.