Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007415.1

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

208599 .. 213682

Gene Structure 5084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007415.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgaaatgctatgatgaagctgacggcgggcaagggaggccatcagtcttcagaacacgaagcaaggaaggatcaatttggtttgcttcagaaatgaaagctgtaagtgatgattgtgaaaggttcacatcatttcctcctgggcatttatactctagcaaacaaggagggctgagaaggtggtacaatccacaatggtttttggagaagataccatcgactccttatgatcccattgttttacgcgaggcttttgagaagatcaggcctgatcttggaagaattgagaagtgggtctttcgcaaagcatttgatgatgatcagaagccatatttaccaaagaatgctgcgagatcgacagttcctggtggtccaagtgtggcatgcagcacagcaaaagctgtggagtgggatgcagaatggtccaaaaaccccgattcatctggtcgtgctgcacttagtatacatgcagctgtgtatgaggaatccaaagatgtaaagactggaagtcttgtgagtgactctccacagaaacttgtaaaagcggttgcagagaaagtggctgcagtagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

191

Amino Acids

21.28

Weight (kDa)

8.68

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	463
AccII	CGCG	1 cut(s)	246
AciI	CCGC	2 cut(s)	27, 545
AclWI	GGATC	2 cut(s)	79, 224
AcuI	CTGAAG	2 cut(s)	34, 72
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	275
AhdI	GACNNNNNGTC	1 cut(s)	507
AjnI	CCWGG	2 cut(s)	139, 364
AluBI	AGCT	4 cut(s)	20, 101, 401, 473
AluI	AGCT	4 cut(s)	20, 101, 401, 473
AlwI	GGATC	2 cut(s)	79, 224
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	2 cut(s)	38, 266
ApeKI	GCWGC	5 cut(s)	347, 387, 452, 470, 563
AspS9I	GGNCC	2 cut(s)	371, 423
AvaII	GGWCC	2 cut(s)	371, 423
BbsI	GAAGAC	1 cut(s)	40
BbvI	GCAGC	5 cut(s)	334, 399, 439, 482, 550
BccI	CCATC	2 cut(s)	49, 223
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	2 cut(s)	141, 366
BclI	TGATCA	1 cut(s)	319
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	564
BisI	GCNGC	5 cut(s)	348, 388, 453, 471, 564
BlsI	GCNGC	5 cut(s)	349, 389, 454, 472, 565
Bme1390I	CCNGG	2 cut(s)	141, 366
Bme18I	GGWCC	2 cut(s)	371, 423
BmeRI	GACNNNNNGTC	1 cut(s)	507
BmgT120I	GGNCC	2 cut(s)	371, 423
BmrFI	CCNGG	2 cut(s)	141, 366
BmsI	GCATC	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	40
BplI	GAGNNNNNCTC	2 cut(s)	508, 540
BsaBI	GATNNNNATC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	508
Bse8I	GATNNNNATC	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	141, 366
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	508
BseXI	GCAGC	5 cut(s)	334, 399, 439, 482, 550
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	40, 268
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	40, 268
Bsp143I	GATC	6 cut(s)	71, 229, 261, 271, 319, 353
BspACI	CCGC	2 cut(s)	27, 545
BspANI	GGCC	2 cut(s)	40, 268
BspCNI	CTCAG	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	568
BspPI	GGATC	2 cut(s)	79, 224
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	6 cut(s)	71, 229, 261, 271, 319, 353
BssNAI	GTATAC	1 cut(s)	464
Bst1107I	GTATAC	1 cut(s)	464
Bst2UI	CCWGG	2 cut(s)	141, 366
Bst4CI	ACNGT	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	29, 385
BstDEI	CTNAG	2 cut(s)	173, 458
BstF5I	GGATG	1 cut(s)	418
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	6 cut(s)	74, 232, 264, 274, 322, 356
BstMBI	GATC	6 cut(s)	71, 229, 261, 271, 319, 353
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	2 cut(s)	141, 366
BstNSI	RCATGY	2 cut(s)	387, 470
BstSCI	CCNGG	2 cut(s)	139, 364
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	5 cut(s)	334, 399, 439, 482, 550
BstV2I	GAAGAC	1 cut(s)	40
BstZ17I	GTATAC	1 cut(s)	464
BsuRI	GGCC	2 cut(s)	40, 268
BtsCI	GGATG	1 cut(s)	418
Cac8I	GCNNGC	2 cut(s)	29, 385
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	371, 423
Csp6I	GTAC	1 cut(s)	184
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviAII	CATG	2 cut(s)	384, 467
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	173, 458
DpnI	GATC	6 cut(s)	73, 231, 263, 273, 321, 355
DpnII	GATC	6 cut(s)	71, 229, 261, 271, 319, 353
DriI	GACNNNNNGTC	1 cut(s)	507
Eam1105I	GACNNNNNGTC	1 cut(s)	507
Eco147I	AGGCCT	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	371, 423
Eco57I	CTGAAG	2 cut(s)	34, 72
EcoRII	CCWGG	2 cut(s)	139, 364
FaeI	CATG	2 cut(s)	387, 470
FaiI	YATR	8 cut(s)	12, 151, 228, 331, 385, 464, 468, 480
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FatI	CATG	2 cut(s)	383, 466
FauI	CCCGC	1 cut(s)	20
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	463
Fnu4HI	GCNGC	5 cut(s)	348, 388, 453, 471, 564
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	5 cut(s)	348, 388, 453, 471, 564
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	5 cut(s)	348, 388, 453, 471, 564
HaeIII	GGCC	2 cut(s)	40, 268
Hin1II	CATG	2 cut(s)	387, 470
HinfI	GANTC	4 cut(s)	220, 437, 485, 521
Hpy166II	GTNNAC	2 cut(s)	126, 464
Hpy188I	TCNGA	3 cut(s)	53, 91, 324
Hpy8I	GTNNAC	2 cut(s)	126, 464
HpyAV	CCTTC	2 cut(s)	62, 171
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	6 cut(s)	387, 416, 455, 470, 551, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	2 cut(s)	173, 458
Hsp92II	CATG	2 cut(s)	387, 470
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	6 cut(s)	71, 229, 261, 271, 319, 353
LpnPI	CCDG	8 cut(s)	126, 153, 250, 282, 351, 378, 429, 489
Lsp1109I	GCAGC	5 cut(s)	334, 399, 439, 482, 550
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	6 cut(s)	73, 231, 263, 273, 321, 355
MboI	GATC	6 cut(s)	71, 229, 261, 271, 319, 353
MboII	GAAGA	4 cut(s)	40, 220, 271, 291
MluCI	AATT	2 cut(s)	75, 282
MlyI	GAGTC	2 cut(s)	214, 515
MnlI	CCTC	5 cut(s)	30, 147, 161, 241, 475
MspA1I	CMGCKG	1 cut(s)	473
MspR9I	CCNGG	2 cut(s)	141, 366
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	2 cut(s)	141, 366
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	6 cut(s)	71, 229, 261, 271, 319, 353
NlaIII	CATG	2 cut(s)	387, 470
NmuCI	GTSAC	1 cut(s)	518
NspI	RCATGY	2 cut(s)	387, 470
PaeI	GCATGC	1 cut(s)	387
PceI	AGGCCT	1 cut(s)	268
PctI	GAATGC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	437, 485
PkrI	GCNGC	5 cut(s)	349, 389, 454, 472, 565
PleI	GAGTC	2 cut(s)	214, 515
PpsI	GAGTC	2 cut(s)	214, 515
Psp6I	CCWGG	2 cut(s)	139, 364
PspGI	CCWGG	2 cut(s)	139, 364
PspPI	GGNCC	2 cut(s)	371, 423
PstI	CTGCAG	1 cut(s)	568
PstNI	CAGNNNCTG	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SatI	GCNGC	5 cut(s)	348, 388, 453, 471, 564
Sau3AI	GATC	6 cut(s)	71, 229, 261, 271, 319, 353
Sau96I	GGNCC	2 cut(s)	371, 423
SchI	GAGTC	2 cut(s)	214, 515
ScrFI	CCNGG	2 cut(s)	141, 366
SetI	ASST	6 cut(s)	22, 103, 125, 182, 403, 475
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	1 cut(s)	564
SinI	GGWCC	2 cut(s)	371, 423
SphI	GCATGC	1 cut(s)	387
Sse9I	AATT	2 cut(s)	75, 282
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	2 cut(s)	27, 545
SspMI	CTAG	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	139, 364
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	2 cut(s)	218, 356
TasI	AATT	2 cut(s)	75, 282
TfiI	GAWTC	2 cut(s)	437, 485
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	5 cut(s)	347, 387, 452, 470, 563
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	4 cut(s)	17, 30, 110, 429
VpaK11BI	GGWCC	2 cut(s)	371, 423
XceI	RCATGY	2 cut(s)	387, 470
XmiI	GTMKAC	1 cut(s)	463
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.