Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000881.1

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Reverse (-)

49533 .. 49962

Gene Structure 430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000881.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgctgatgaacgcaagctttgtctaccctgaaaacactccaactacaaaagaaggatactactttaggactatctttgagaaatattttccaaagaatgctgcgagatcgacagttcccggtggtccaaaagtggcatgcatcacagaaaaagatgtggagtgggatacagaatggtccaagaaccctgatccatctggccgtgctgcacttggtatgcatgcagctgcgtatgaggaatccaaagatgtgaagactggaagtcttgtgagtgactctccacagaaacttgtaaaaggggttgcagagaaagtggctgccgtagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

109

Amino Acids

11.93

Weight (kDa)

6.58

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	199
AhdI	GACNNNNNGTC	1 cut(s)	261
AluBI	AGCT	2 cut(s)	18, 227
AluI	AGCT	2 cut(s)	18, 227
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	5 cut(s)	101, 206, 224, 227, 317
AspS9I	GGNCC	2 cut(s)	125, 177
AsuC2I	CCSGG	1 cut(s)	120
AvaII	GGWCC	2 cut(s)	125, 177
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	5 cut(s)	88, 193, 214, 236, 304
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	2 cut(s)	186, 305
BciVI	GTATCC	2 cut(s)	50, 160
BcnI	CCSGG	1 cut(s)	120
BfuI	GTATCC	2 cut(s)	50, 160
BisI	GCNGC	5 cut(s)	102, 207, 225, 228, 318
BlsI	GCNGC	5 cut(s)	103, 208, 226, 229, 319
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	2 cut(s)	125, 177
BmeRI	GACNNNNNGTC	1 cut(s)	261
BmgT120I	GGNCC	2 cut(s)	125, 177
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	260
BplI	GAGNNNNNCTC	2 cut(s)	262, 294
BpuMI	CCSGG	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	5 cut(s)	88, 193, 214, 236, 304
BsgI	GTGCAG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	107, 190
BspANI	GGCC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	262
BssMI	GATC	2 cut(s)	107, 190
Bst4CI	ACNGT	1 cut(s)	115
BstC8I	GCNNGC	3 cut(s)	16, 139, 222
BstKTI	GATC	2 cut(s)	110, 193
BstMBI	GATC	2 cut(s)	107, 190
BstNSI	RCATGY	2 cut(s)	141, 224
BstSCI	CCNGG	1 cut(s)	118
BstV1I	GCAGC	5 cut(s)	88, 193, 214, 236, 304
BstV2I	GAAGAC	1 cut(s)	260
BsuI	GTATCC	2 cut(s)	50, 160
BsuRI	GGCC	1 cut(s)	201
Cac8I	GCNNGC	3 cut(s)	16, 139, 222
Cfr13I	GGNCC	2 cut(s)	125, 177
CviAII	CATG	2 cut(s)	138, 221
CviJI	RGCY	4 cut(s)	18, 201, 227, 317
CviKI_1	RGCY	4 cut(s)	18, 201, 227, 317
DpnI	GATC	2 cut(s)	109, 192
DpnII	GATC	2 cut(s)	107, 190
DriI	GACNNNNNGTC	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	199
Eam1105I	GACNNNNNGTC	1 cut(s)	261
Eco47I	GGWCC	2 cut(s)	125, 177
EcoT22I	ATGCAT	2 cut(s)	143, 222
FaeI	CATG	2 cut(s)	141, 224
FaiI	YATR	4 cut(s)	139, 218, 222, 234
FatI	CATG	2 cut(s)	137, 220
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	5 cut(s)	102, 207, 225, 228, 318
Fsp4HI	GCNGC	5 cut(s)	102, 207, 225, 228, 318
GluI	GCNGC	5 cut(s)	102, 207, 225, 228, 318
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	2 cut(s)	141, 224
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	2 cut(s)	239, 275
HpaII	CCGG	1 cut(s)	120
Hpy166II	GTNNAC	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	5 cut(s)	141, 209, 220, 224, 305
Hsp92II	CATG	2 cut(s)	141, 224
Kzo9I	GATC	2 cut(s)	107, 190
LpnPI	CCDG	5 cut(s)	42, 133, 183, 201, 243
Lsp1109I	GCAGC	5 cut(s)	88, 193, 214, 236, 304
LweI	GCATC	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	2 cut(s)	109, 192
MboI	GATC	2 cut(s)	107, 190
MboII	GAAGA	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	1 cut(s)	229
Mph1103I	ATGCAT	2 cut(s)	143, 222
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	107, 190
NlaIII	CATG	2 cut(s)	141, 224
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	2 cut(s)	143, 222
NspI	RCATGY	2 cut(s)	141, 224
PaeI	GCATGC	2 cut(s)	141, 224
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	5 cut(s)	103, 208, 226, 229, 319
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PspPI	GGNCC	2 cut(s)	125, 177
PvuII	CAGCTG	1 cut(s)	227
SatI	GCNGC	5 cut(s)	102, 207, 225, 228, 318
Sau3AI	GATC	2 cut(s)	107, 190
Sau96I	GGNCC	2 cut(s)	125, 177
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	120
SetI	ASST	2 cut(s)	20, 229
SfaNI	GCATC	1 cut(s)	150
SinI	GGWCC	2 cut(s)	125, 177
SphI	GCATGC	2 cut(s)	141, 224
SspI	AATATT	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	5 cut(s)	101, 206, 224, 227, 317
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	23
VpaK11BI	GGWCC	2 cut(s)	125, 177
XceI	RCATGY	2 cut(s)	141, 224
XmiI	GTMKAC	1 cut(s)	24
Zsp2I	ATGCAT	2 cut(s)	143, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.