RLG00000018095

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
25279533 .. 25284625
5093 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018095

Sequence Viewer

Length: 672 bp
ATGGCGCTTGATACTGGGAGTGACCTGTTTTGGGTGTCTTGTGAAGGAACAGCTTATGCTCCTAATTTCGAGGTCAGCAAATATGACCCCAAAGGGTCATCGACTAGCAAGAAAGTCCCTTGCAGCGTAATAAATGTCTGGGAGCATTCAACACTTGCCCTTATAGGGTCTCTTATGTCTCTGATCAAACTTCTACTTCTGGGATATTGTATGAGGAACATGGGGAAGAATTTGTTGACATGCTGGACGGAGCTTGTCCTCCTTGATACAAGAGACAACACCTTCATGGCAGATCGAGACGCTATTGGCATAACCCCACTGTACATGGGCTGGGGTCTTGATGGAGGGCTGAGAAGATGGTACAATCCACAATGGTTTTTGGAGAAGATACCATCGATTCCTTATGATCCCATTGTTTTACATGAGGCTTTTGAGAAGGCTGTGTTAAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCCGGACGGTTGGACTCATCACTCGTTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCAAGTCAGTGGGGGTCACAGTTACATACCTTTTGCATTGGCTTGGAGGTCAAGGGAAGGTTCTTGGTGTCAGTGTTCAATAGCCTTTCCAATGCAAACTTTGGTACCAGAAAGGTTTAG

Protein Analysis

224

Amino Acids

24.8

Weight (kDa)

8.18

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asn_synthase PF00733 140 - 200 6.8e-13 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 656
AccB1I GGYRCC 1 cut(s) 656
AccIII TCCGGA 1 cut(s) 488
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 1 cut(s) 229
AfaI GTAC 4 cut(s) 323, 362, 468, 658
AfiI CCNNNNNNNGG 2 cut(s) 31, 165
AgsI TTSAA 2 cut(s) 150, 631
AluBI AGCT 3 cut(s) 53, 253, 551
AluI AGCT 3 cut(s) 53, 253, 551
Alw26I GTCTC 5 cut(s) 174, 183, 267, 291, 445
AlwI GGATC 1 cut(s) 401
AlwNI CAGNNNCTG 1 cut(s) 551
Aor13HI TCCGGA 1 cut(s) 488
ApeKI GCWGC 3 cut(s) 123, 515, 551
ApoI RAATTY 1 cut(s) 229
Asp718I GGTACC 1 cut(s) 656
AspLEI GCGC 1 cut(s) 7
BaeI ACNNNNGTAYC 3 cut(s) 450, 483, 640
BanI GGYRCC 1 cut(s) 656
BbvI GCAGC 3 cut(s) 135, 502, 538
BccI CCATC 3 cut(s) 335, 351, 400
BclI TGATCA 1 cut(s) 183
BcoDI GTCTC 5 cut(s) 174, 183, 267, 291, 445
BfaI CTAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 3 cut(s) 124, 516, 552
BlsI GCNGC 3 cut(s) 125, 517, 553
BmiI GGNNCC 1 cut(s) 658
BmrI ACTGGG 1 cut(s) 24
BmuI ACTGGG 1 cut(s) 24
Bsa29I ATCGAT 1 cut(s) 395
BsaI GGTCTC 1 cut(s) 174
BsaWI WCCGGW 1 cut(s) 488
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 165
Bse1I ACTGG 1 cut(s) 19
BseAI TCCGGA 1 cut(s) 488
BseCI ATCGAT 1 cut(s) 395
BseLI CCNNNNNNNGG 2 cut(s) 31, 165
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 3 cut(s) 135, 502, 538
BseYI CCCAGC 1 cut(s) 330
BshNI GGYRCC 1 cut(s) 656
BshVI ATCGAT 1 cut(s) 395
BsiSI CCGG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 31, 165
BsmAI GTCTC 5 cut(s) 174, 183, 267, 291, 445
BsmBI CGTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 145
Bso31I GGTCTC 1 cut(s) 174
Bsp13I TCCGGA 1 cut(s) 488
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 3 cut(s) 183, 292, 406
BspCNI CTCAG 1 cut(s) 342
BspDI ATCGAT 1 cut(s) 395
BspEI TCCGGA 1 cut(s) 488
BspLI GGNNCC 1 cut(s) 658
BspPI GGATC 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 656
BspTNI GGTCTC 1 cut(s) 174
BsrGI TGTACA 1 cut(s) 321
BsrI ACTGG 1 cut(s) 19
BssMI GATC 3 cut(s) 183, 292, 406
Bst4CI ACNGT 3 cut(s) 321, 495, 573
BstAUI TGTACA 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 186, 295, 409
BstMAI GTCTC 5 cut(s) 174, 183, 267, 291, 445
BstMBI GATC 3 cut(s) 183, 292, 406
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstNSI RCATGY 1 cut(s) 243
BstV1I GCAGC 3 cut(s) 135, 502, 538
Bsu15I ATCGAT 1 cut(s) 395
BsuTUI ATCGAT 1 cut(s) 395
BtsIMutI CAGTG 3 cut(s) 317, 566, 630
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 395
CseI GACGC 1 cut(s) 308
Csp6I GTAC 4 cut(s) 322, 361, 467, 657
CviAII CATG 5 cut(s) 220, 240, 286, 325, 422
CviQI GTAC 4 cut(s) 322, 361, 467, 657
DdeI CTNAG 1 cut(s) 350
DpnI GATC 3 cut(s) 185, 294, 408
DpnII GATC 3 cut(s) 183, 292, 406
Eco31I GGTCTC 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 5 cut(s) 223, 243, 289, 328, 425
FaqI GGGAC 1 cut(s) 101
FatI CATG 5 cut(s) 219, 239, 285, 324, 421
FbaI TGATCA 1 cut(s) 183
Fnu4HI GCNGC 3 cut(s) 124, 516, 552
Fsp4HI GCNGC 3 cut(s) 124, 516, 552
FspBI CTAG 1 cut(s) 105
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 124, 516, 552
GsaI CCCAGC 1 cut(s) 334
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 1 cut(s) 489
HgaI GACGC 1 cut(s) 308
HhaI GCGC 1 cut(s) 7
Hin1II CATG 5 cut(s) 223, 243, 289, 328, 425
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HinfI GANTC 2 cut(s) 397, 500
HpaII CCGG 1 cut(s) 489
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 2 cut(s) 183, 547
Hpy188III TCNNGA 3 cut(s) 296, 338, 489
Hpy8I GTNNAC 1 cut(s) 237
HpyAV CCTTC 4 cut(s) 38, 292, 430, 603
HpyCH4III ACNGT 3 cut(s) 321, 495, 573
HpyCH4V TGCA 4 cut(s) 123, 554, 588, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 1 cut(s) 350
Hsp92II CATG 5 cut(s) 223, 243, 289, 328, 425
HspAI GCGC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 488
KpnI GGTACC 1 cut(s) 660
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 3 cut(s) 183, 292, 406
LmnI GCTCC 3 cut(s) 64, 142, 250
LpnPI CCDG 6 cut(s) 38, 124, 185, 229, 316, 502
Lsp1109I GCAGC 3 cut(s) 135, 502, 538
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 3 cut(s) 20, 567, 573
MalI GATC 3 cut(s) 185, 294, 408
MboI GATC 3 cut(s) 183, 292, 406
MboII GAAGA 3 cut(s) 238, 366, 397
MluCI AATT 2 cut(s) 64, 229
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 6 cut(s) 64, 207, 269, 338, 418, 592
MroI TCCGGA 1 cut(s) 488
MseI TTAA 1 cut(s) 446
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 1 cut(s) 489
Mva1269I GAATGC 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 521
NdeII GATC 3 cut(s) 183, 292, 406
NlaIII CATG 5 cut(s) 223, 243, 289, 328, 425
NlaIV GGNNCC 1 cut(s) 658
NmuCI GTSAC 2 cut(s) 20, 567
NspI RCATGY 1 cut(s) 243
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 3 cut(s) 125, 517, 553
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
PspFI CCCAGC 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 551
RsaI GTAC 4 cut(s) 323, 362, 468, 658
RsaNI GTAC 4 cut(s) 322, 361, 467, 657
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 3 cut(s) 124, 516, 552
Sau3AI GATC 3 cut(s) 183, 292, 406
SchI GAGTC 1 cut(s) 494
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 2 cut(s) 64, 229
SspMI CTAG 1 cut(s) 105
TaaI ACNGT 3 cut(s) 321, 495, 573
TaqI TCGA 4 cut(s) 69, 101, 295, 395
TasI AATT 2 cut(s) 64, 229
TatI WGTACW 1 cut(s) 321
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TscAI CASTG 3 cut(s) 324, 566, 630
TseFI GTSAC 2 cut(s) 20, 567
TseI GCWGC 3 cut(s) 123, 515, 551
Tsp45I GTSAC 2 cut(s) 20, 567
TspDTI ATGAA 1 cut(s) 274
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 3 cut(s) 324, 566, 630
XapI RAATTY 1 cut(s) 229
XceI RCATGY 1 cut(s) 243
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.