Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

26150318 .. 26160476

Gene Structure 10159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48736

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCTGGAAGGGATGTTCTCCTTTGTCCTCCTTGATACAAGAGACAACACCTTCATGGCAGCTCGAGACGCTATTGGCATAACCCCACTGTACATGGGCTGGGGTCTTGATGGATCAATTTGGTTTGCTTCAGAAATGAAAGCTATAAGTGATGATTGTGAAAAATTCATATCTTTTCCTCCTGGGCATTTATACTCTAGCAAACAAGGAGGGCTGAGAAGATGGTACAATCCACAATGGTTTTTGGAGAAGATACCATCGATTCCTTATGTTTCCATTGTTTTACACGAGGCTTTTGAGAAGGAAAGGTTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

105

Amino Acids

12.12

Weight (kDa)

5.25

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_7	PF13537	2 - 50	9.8e-15	Glutamine amidotransferase domain
DUF3700	PF12481	2 - 88	4.2e-14	Aluminium induced protein
GATase_6	PF13522	2 - 45	3.4e-06	Glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	2 cut(s)	92, 227
AjnI	CCWGG	1 cut(s)	181
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	2 cut(s)	62, 143
AluI	AGCT	2 cut(s)	62, 143
Alw26I	GTCTC	2 cut(s)	36, 60
AlwI	GGATC	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	63
BauI	CACGAG	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	3 cut(s)	104, 216, 265
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	2 cut(s)	36, 60
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	183
BseCI	ATCGAT	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	71
BseYI	CCCAGC	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	260
BsiHKCI	CYCGRG	1 cut(s)	63
BsmAI	GTCTC	2 cut(s)	36, 60
BsmBI	CGTCTC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	260
BspPI	GGATC	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	1 cut(s)	113
BssSI	CACGAG	1 cut(s)	287
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	90
BstAUI	TGTACA	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	116
BstMAI	GTCTC	2 cut(s)	36, 60
BstMBI	GATC	1 cut(s)	113
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	71
Bsu15I	ATCGAT	1 cut(s)	260
BsuTUI	ATCGAT	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	86
ClaI	ATCGAT	1 cut(s)	260
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	91, 226
CviAII	CATG	2 cut(s)	55, 94
CviJI	RGCY	5 cut(s)	62, 99, 143, 214, 293
CviKI_1	RGCY	5 cut(s)	62, 99, 143, 214, 293
CviQI	GTAC	2 cut(s)	91, 226
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	1 cut(s)	115
DpnII	GATC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	181
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	2 cut(s)	58, 97
FaiI	YATR	7 cut(s)	56, 80, 95, 146, 170, 193, 270
FatI	CATG	2 cut(s)	54, 93
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	60
GsaI	CCCAGC	1 cut(s)	103
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	2 cut(s)	58, 97
HinfI	GANTC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	65, 107
HpyAV	CCTTC	2 cut(s)	61, 295
HpyCH4III	ACNGT	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	58, 97
Kzo9I	GATC	1 cut(s)	113
LpnPI	CCDG	3 cut(s)	85, 168, 195
Lsp1109I	GCAGC	1 cut(s)	71
MaeI	CTAG	1 cut(s)	198
MalI	GATC	1 cut(s)	115
MboI	GATC	1 cut(s)	113
MboII	GAAGA	2 cut(s)	231, 262
MluCI	AATT	2 cut(s)	117, 164
MnlI	CCTC	4 cut(s)	38, 189, 203, 283
MseI	TTAA	1 cut(s)	316
MslI	CAYNNNNRTG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	58, 97
PaeR7I	CTCGAG	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	181
RsaI	GTAC	2 cut(s)	92, 227
RsaNI	GTAC	2 cut(s)	91, 226
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	316
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	183
SetI	ASST	4 cut(s)	53, 64, 145, 311
Sfr274I	CTCGAG	1 cut(s)	63
SlaI	CTCGAG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	2 cut(s)	117, 164
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	64, 260
TasI	AATT	2 cut(s)	117, 164
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	43, 152, 157
TspRI	CASTG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	164
XhoI	CTCGAG	1 cut(s)	63
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.