Rroxscaffold_2G00130090

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
66222925 .. 66232159
9235 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00130090.1

Sequence Viewer

Length: 426 bp
ATGTTTCTTATGTCTCGTAAAATTAAATCTCTGGGTGTAAAAATGGTCCTTTCTGGTGAAGGTTCGGATGAAATCTTTGGTGGCTACTTGTATTTCCACAAGGCACCAAACAAGGAAGAGTTTTACCAAGAAACATGCCAGAAGATTAAAGGTCTTCATCTGTATGACTGTCTGAGGGCCAACAAATTGACATCAGCTTGGGGTGTTGGGGCTCGTGTACCGTTTCTTGACAAAGAATTTATCAAGACTGCTATGGATATTGATCCAGAATGGAAAATGATCACGCCTGATCTTGGAAGAATTGAGAAGTGGGTCTTCCGCAAAGCATTTGATGATGATCAGAAGCCATATTACCAAAGCACATCTTGTACAGGCAGAAGGATCAGTTTAGTGATGGTGTCGGTTACAGCTGGATTGACGGGTTGA

Protein Analysis

141

Amino Acids

16.12

Weight (kDa)

8.94

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asn_synthase PF00733 1 - 43 6.1e-12 Asparagine synthase
Asn_synthase PF00733 36 - 112 4.4e-17 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AciI CCGC 1 cut(s) 319
AclWI GGATC 2 cut(s) 257, 389
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 2 cut(s) 219, 370
AfiI CCNNNNNNNGG 1 cut(s) 293
AluBI AGCT 2 cut(s) 197, 410
AluI AGCT 2 cut(s) 197, 410
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 2 cut(s) 257, 389
AoxI GGCC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 46, 177
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 214
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BauI CACGAG 1 cut(s) 213
BbsI GAAGAC 2 cut(s) 146, 307
BccI CCATC 1 cut(s) 388
BclI TGATCA 2 cut(s) 279, 337
BcoDI GTCTC 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 2 cut(s) 46, 177
BmiI GGNNCC 1 cut(s) 105
BpiI GAAGAC 2 cut(s) 146, 307
BsaBI GATNNNNATC 2 cut(s) 261, 336
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse8I GATNNNNATC 2 cut(s) 261, 336
BseGI GGATG 1 cut(s) 73
BseJI GATNNNNATC 2 cut(s) 261, 336
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 164
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 18
BsnI GGCC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 214
Bsp1407I TGTACA 1 cut(s) 368
Bsp143I GATC 5 cut(s) 262, 279, 289, 337, 381
BspACI CCGC 1 cut(s) 319
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 105
BspPI GGATC 2 cut(s) 257, 389
BspT107I GGYRCC 1 cut(s) 103
BsrGI TGTACA 1 cut(s) 368
BssMI GATC 5 cut(s) 262, 279, 289, 337, 381
BssSI CACGAG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 170, 222
Bst6I CTCTTC 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 368
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 5 cut(s) 265, 282, 292, 340, 384
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 5 cut(s) 262, 279, 289, 337, 381
BstNSI RCATGY 1 cut(s) 138
BstV2I GAAGAC 2 cut(s) 146, 307
BsuRI GGCC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 46, 177
Csp6I GTAC 2 cut(s) 218, 369
CviAII CATG 1 cut(s) 135
CviJI RGCY 6 cut(s) 84, 179, 197, 212, 346, 410
CviKI_1 RGCY 6 cut(s) 84, 179, 197, 212, 346, 410
CviQI GTAC 2 cut(s) 218, 369
DdeI CTNAG 1 cut(s) 173
DpnI GATC 5 cut(s) 264, 281, 291, 339, 383
DpnII GATC 5 cut(s) 262, 279, 289, 337, 381
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 214
FaeI CATG 1 cut(s) 138
FaiI YATR 5 cut(s) 11, 136, 165, 254, 349
FalI AAGNNNNNCTT 4 cut(s) 299, 331, 349, 381
FatI CATG 1 cut(s) 134
FbaI TGATCA 2 cut(s) 279, 337
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 214
HaeIII GGCC 1 cut(s) 179
Hin1II CATG 1 cut(s) 138
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 3 cut(s) 67, 174, 342
Hpy188III TCNNGA 3 cut(s) 227, 244, 266
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 53, 372
HpyCH4III ACNGT 2 cut(s) 170, 222
HpyF3I CTNAG 1 cut(s) 173
Hsp92II CATG 1 cut(s) 138
Ksp22I TGATCA 2 cut(s) 279, 337
Kzo9I GATC 5 cut(s) 262, 279, 289, 337, 381
LpnPI CCDG 7 cut(s) 17, 39, 152, 279, 300, 357, 396
MaeIII GTNAC 1 cut(s) 403
MalI GATC 5 cut(s) 264, 281, 291, 339, 383
MboI GATC 5 cut(s) 262, 279, 289, 337, 381
MboII GAAGA 5 cut(s) 128, 146, 154, 307, 309
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 4 cut(s) 21, 185, 236, 300
MnlI CCTC 1 cut(s) 168
MseI TTAA 2 cut(s) 24, 147
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 410
NdeII GATC 5 cut(s) 262, 279, 289, 337, 381
NlaIII CATG 1 cut(s) 138
NlaIV GGNNCC 1 cut(s) 105
NspI RCATGY 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 2 cut(s) 46, 177
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 2 cut(s) 219, 370
RsaNI GTAC 2 cut(s) 218, 369
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 2 cut(s) 24, 147
Sau3AI GATC 5 cut(s) 262, 279, 289, 337, 381
Sau96I GGNCC 2 cut(s) 46, 177
SduI GDGCHC 1 cut(s) 214
SetI ASST 4 cut(s) 64, 154, 199, 412
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 4 cut(s) 21, 185, 236, 300
SsiI CCGC 1 cut(s) 319
TaaI ACNGT 2 cut(s) 170, 222
TasI AATT 4 cut(s) 21, 185, 236, 300
TatI WGTACW 1 cut(s) 368
Tru1I TTAA 2 cut(s) 24, 147
Tru9I TTAA 2 cut(s) 24, 147
TspDTI ATGAA 2 cut(s) 84, 146
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.