Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

27669800 .. 27753830

Gene Structure 84031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG246800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGGAAAGACTGGGCGTTCGAGAGAGACAACTCTCAGGCCAAGCGGTCTCGCATTATCAAACTCTCGCGCCGGTTGCGGCATCGCGGTCCTGATTGGAGCGGGTTGCATTGCCATGGGGATTGTTACCTTGCTCATCAGCGATTGGCTATTGTGGACCCTGCCTCAGGAGATCAGCCACTCTACAACGAGGACAAGACCGTCATTGTCACGATGGAAAAGGAGAAACTTAGAATATCTTAGAATTCTCGCCGTCTTGGGCTGCGCCGACAGCTCTCAGGCCAAGCGGTCTCGCATTATCGAACTCTCACGCCGGTTGCGGCATCGCGGTCCTGATTGGAGCGGGTTGCATTGCCATGGGGATTGTTACCTTGCTCATCAGCGATTGGCTTTTGTGGACCCTGCCTCAAGAGATCAGCCACTCTACAACGAGGACAAGACCGTCATTGGCACGGTTAATGGTGAGATATATAACCACAAGCAGTTGAGAGAAACATTGAAGGGTCATCAATTCCGAACTGGCAGTGACTGTGAAGTGATAGCACATCTTTATGAGGAACATGGGGAAGAATTTGTTGACATGCTGGACGGGATGTTCTCCTTTGTCCTCCTTGATACAAGAGACAACACTTTCATGGCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

214

Amino Acids

24.1

Weight (kDa)

8.58

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_6	PF13522	111 - 210	4e-29	Glutamine amidotransferase domain
GATase_7	PF13537	126 - 214	9.6e-28	Glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	199, 440
AccBSI	CCGCTC	2 cut(s)	101, 342
AccII	CGCG	3 cut(s)	69, 86, 327
AciI	CCGC	9 cut(s)	45, 78, 86, 101, 286, 319, 327, 342, 638
AcsI	RAATTY	2 cut(s)	243, 569
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	499
AloI	GAACNNNNNNTCC	2 cut(s)	578, 610
AluBI	AGCT	1 cut(s)	273
AluI	AGCT	1 cut(s)	273
Alw26I	GTCTC	4 cut(s)	20, 53, 294, 615
AlwNI	CAGNNNCTG	1 cut(s)	528
AoxI	GGCC	2 cut(s)	38, 279
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	2 cut(s)	243, 569
ArsI	GACNNNNNNTTYG	1 cut(s)	33
AspLEI	GCGC	2 cut(s)	71, 266
AspS9I	GGNCC	4 cut(s)	88, 156, 329, 397
AsuHPI	GGTGA	1 cut(s)	473
AvaII	GGWCC	4 cut(s)	88, 156, 329, 397
AxyI	CCTNAGG	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	236
BcoDI	GTCTC	4 cut(s)	20, 53, 294, 615
BisI	GCNGC	4 cut(s)	79, 262, 320, 639
BlsI	GCNGC	4 cut(s)	80, 263, 321, 640
Bme18I	GGWCC	4 cut(s)	88, 156, 329, 397
BmgT120I	GGNCC	4 cut(s)	88, 156, 329, 397
BmiI	GGNNCC	2 cut(s)	158, 399
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	2 cut(s)	90, 331
BmuI	ACTGGG	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	391
BsaI	GGTCTC	2 cut(s)	53, 294
BsaJI	CCNNGG	2 cut(s)	114, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	2 cut(s)	71, 312
Bse1I	ACTGG	2 cut(s)	16, 523
Bse21I	CCTNAGG	1 cut(s)	165
Bse3DI	GCAATG	2 cut(s)	108, 349
BseDI	CCNNGG	2 cut(s)	114, 355
BseGI	GGATG	1 cut(s)	597
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	2 cut(s)	108, 349
BseMII	CTCAG	3 cut(s)	49, 179, 290
BseNI	ACTGG	2 cut(s)	16, 523
BseXI	GCAGC	1 cut(s)	248
Bsh1236I	CGCG	3 cut(s)	69, 86, 327
BshFI	GGCC	2 cut(s)	40, 281
BsiSI	CCGG	2 cut(s)	72, 313
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	4 cut(s)	20, 53, 294, 615
BsnI	GGCC	2 cut(s)	40, 281
Bso31I	GGTCTC	2 cut(s)	53, 294
Bsp143I	GATC	2 cut(s)	171, 412
Bsp19I	CCATGG	2 cut(s)	114, 355
BspACI	CCGC	9 cut(s)	45, 78, 86, 101, 286, 319, 327, 342, 638
BspANI	GGCC	2 cut(s)	40, 281
BspCNI	CTCAG	3 cut(s)	48, 178, 289
BspFNI	CGCG	3 cut(s)	69, 86, 327
BspLI	GGNNCC	2 cut(s)	158, 399
BspTNI	GGTCTC	2 cut(s)	53, 294
BsrBI	CCGCTC	2 cut(s)	101, 342
BsrDI	GCAATG	2 cut(s)	108, 349
BsrFI	RCCGGY	2 cut(s)	71, 312
BsrI	ACTGG	2 cut(s)	16, 523
BssAI	RCCGGY	2 cut(s)	71, 312
BssECI	CCNNGG	2 cut(s)	114, 355
BssMI	GATC	2 cut(s)	171, 412
BssT1I	CCWWGG	2 cut(s)	114, 355
Bst4CI	ACNGT	4 cut(s)	201, 442, 454, 530
BstDEI	CTNAG	5 cut(s)	35, 165, 229, 239, 276
BstDSI	CCRYGG	2 cut(s)	114, 355
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	597
BstFNI	CGCG	3 cut(s)	69, 86, 327
BstHHI	GCGC	2 cut(s)	71, 266
BstKTI	GATC	2 cut(s)	174, 415
BstMAI	GTCTC	4 cut(s)	20, 53, 294, 615
BstMBI	GATC	2 cut(s)	171, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 270
BstNSI	RCATGY	1 cut(s)	583
BstUI	CGCG	3 cut(s)	69, 86, 327
BstV1I	GCAGC	1 cut(s)	248
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	40, 281
BtgI	CCRYGG	2 cut(s)	114, 355
BtgZI	GCGATG	2 cut(s)	67, 308
BtsCI	GGATG	1 cut(s)	597
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	529
CaiI	CAGNNNCTG	1 cut(s)	528
CfoI	GCGC	2 cut(s)	71, 266
Cfr10I	RCCGGY	2 cut(s)	71, 312
Cfr13I	GGNCC	4 cut(s)	88, 156, 329, 397
CviAII	CATG	5 cut(s)	115, 356, 560, 580, 634
CviJI	RGCY	9 cut(s)	40, 148, 177, 261, 273, 281, 389, 418, 641
CviKI_1	RGCY	9 cut(s)	40, 148, 177, 261, 273, 281, 389, 418, 641
DdeI	CTNAG	5 cut(s)	35, 165, 229, 239, 276
DpnI	GATC	2 cut(s)	173, 414
DpnII	GATC	2 cut(s)	171, 412
DrdI	GACNNNNNNGTC	2 cut(s)	199, 440
DseDI	GACNNNNNNGTC	2 cut(s)	199, 440
Eco130I	CCWWGG	2 cut(s)	114, 355
Eco31I	GGTCTC	2 cut(s)	53, 294
Eco47I	GGWCC	4 cut(s)	88, 156, 329, 397
Eco81I	CCTNAGG	1 cut(s)	165
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	243
EcoT14I	CCWWGG	2 cut(s)	114, 355
ErhI	CCWWGG	2 cut(s)	114, 355
FaeI	CATG	5 cut(s)	118, 359, 563, 583, 637
FaiI	YATR	8 cut(s)	116, 357, 469, 471, 552, 561, 581, 635
FatI	CATG	5 cut(s)	114, 355, 559, 579, 633
FauI	CCCGC	2 cut(s)	94, 335
Fnu4HI	GCNGC	4 cut(s)	79, 262, 320, 639
FokI	GGATG	1 cut(s)	604
Fsp4HI	GCNGC	4 cut(s)	79, 262, 320, 639
GlaI	GCGC	2 cut(s)	70, 265
GluI	GCNGC	4 cut(s)	79, 262, 320, 639
HaeIII	GGCC	2 cut(s)	40, 281
HapII	CCGG	2 cut(s)	72, 313
HhaI	GCGC	2 cut(s)	71, 266
Hin1II	CATG	5 cut(s)	118, 359, 563, 583, 637
Hin6I	GCGC	2 cut(s)	69, 264
HinP1I	GCGC	2 cut(s)	69, 264
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HpaII	CCGG	2 cut(s)	72, 313
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	3 cut(s)	156, 397, 577
Hpy188I	TCNGA	1 cut(s)	515
Hpy188III	TCNNGA	6 cut(s)	21, 91, 167, 210, 332, 408
Hpy8I	GTNNAC	3 cut(s)	156, 397, 577
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	4 cut(s)	201, 442, 454, 530
HpyCH4V	TGCA	2 cut(s)	108, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 270
HpyF3I	CTNAG	5 cut(s)	35, 165, 229, 239, 276
Hsp92II	CATG	5 cut(s)	118, 359, 563, 583, 637
HspAI	GCGC	2 cut(s)	69, 264
Kzo9I	GATC	2 cut(s)	171, 412
LmnI	GCTCC	2 cut(s)	98, 339
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	2 cut(s)	90, 331
MaeIII	GTNAC	4 cut(s)	124, 207, 365, 524
MalI	GATC	2 cut(s)	173, 414
MbiI	CCGCTC	2 cut(s)	101, 342
MboI	GATC	2 cut(s)	171, 412
MboII	GAAGA	1 cut(s)	578
MluCI	AATT	3 cut(s)	243, 509, 569
MnlI	CCTC	6 cut(s)	174, 183, 415, 424, 547, 617
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	4 cut(s)	113, 354, 549, 632
MspI	CCGG	2 cut(s)	72, 313
MvnI	CGCG	3 cut(s)	69, 86, 327
MwoI	GCNNNNNNNGC	2 cut(s)	75, 270
NcoI	CCATGG	2 cut(s)	114, 355
NdeII	GATC	2 cut(s)	171, 412
NlaIII	CATG	5 cut(s)	118, 359, 563, 583, 637
NlaIV	GGNNCC	2 cut(s)	158, 399
NmuCI	GTSAC	2 cut(s)	207, 524
NspI	RCATGY	1 cut(s)	583
PkrI	GCNGC	4 cut(s)	80, 263, 321, 640
PspN4I	GGNNCC	2 cut(s)	158, 399
PspPI	GGNCC	4 cut(s)	88, 156, 329, 397
PstNI	CAGNNNCTG	1 cut(s)	528
RseI	CAYNNNNRTG	4 cut(s)	113, 354, 549, 632
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	4 cut(s)	79, 262, 320, 639
Sau3AI	GATC	2 cut(s)	171, 412
Sau96I	GGNCC	4 cut(s)	88, 156, 329, 397
SetI	ASST	3 cut(s)	131, 275, 372
SfaNI	GCATC	2 cut(s)	90, 331
SinI	GGWCC	4 cut(s)	88, 156, 329, 397
SmiMI	CAYNNNNRTG	4 cut(s)	113, 354, 549, 632
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
Sse9I	AATT	3 cut(s)	243, 509, 569
SsiI	CCGC	9 cut(s)	45, 78, 86, 101, 286, 319, 327, 342, 638
StyI	CCWWGG	2 cut(s)	114, 355
TaaI	ACNGT	4 cut(s)	201, 442, 454, 530
TaqI	TCGA	2 cut(s)	20, 300
TasI	AATT	3 cut(s)	243, 509, 569
TauI	GCSGC	3 cut(s)	81, 322, 641
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	2 cut(s)	207, 524
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	2 cut(s)	207, 524
TspDTI	ATGAA	1 cut(s)	622
TspRI	CASTG	1 cut(s)	529
VpaK11BI	GGWCC	4 cut(s)	88, 156, 329, 397
XagI	CCTNNNNNAGG	1 cut(s)	164
XapI	RAATTY	2 cut(s)	243, 569
XceI	RCATGY	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.