Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000929.1

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Reverse (-)

50882 .. 55351

Gene Structure 4470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000929.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgaaagctataagtgatgattctgaaagattcatatcttttcctcctgggcatctatactctagcaaacaaggagggctgagaaggtggtacaatccagaatggtttttggagaagataccatcatctccttatgatcccattgttttacgcgaggcttttgagaaggaaggcatagatgcacttgaagaagttatctaccatattgagacttatgatgtgaccactgtcagagccagcactccaatgtttcttatgtctcgtaagataaaatctctgggagtaaaaatggtcctttctggtgatcttcagggttctccagatttgaaagcagcaagagaagttgcagattatcttggaactcatcatcacgagtttcactttactgttcagatcggtcctgatcttgggagaattgagaagtgggtcttgcgcagagcatttgatgatgatcagaagccatatttaccaaaggttgctgctttttacttttgcccaatcattatgctaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

171

Amino Acids

19.72

Weight (kDa)

6.07

Isoelectric Point (pI)

55.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	434
AccII	CGCG	1 cut(s)	153
AclWI	GGATC	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	188, 328
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	203, 264
AlwI	GGATC	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	332, 479
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	2 cut(s)	292, 398
AsuHPI	GGTGA	1 cut(s)	314
AvaII	GGWCC	2 cut(s)	292, 398
BauI	CACGAG	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	344, 466
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	48
BclI	TGATCA	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	203, 264
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	2 cut(s)	333, 480
BlsI	GCNGC	2 cut(s)	334, 481
Bme1390I	CCNGG	1 cut(s)	48
Bme18I	GGWCC	2 cut(s)	292, 398
BmgT120I	GGNCC	2 cut(s)	292, 398
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	2 cut(s)	61, 169
BoxI	GACNNNNGTC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	303
BsaBI	GATNNNNATC	2 cut(s)	34, 450
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse8I	GATNNNNATC	2 cut(s)	34, 450
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	47
BseJI	GATNNNNATC	2 cut(s)	34, 450
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	344, 466
Bsh1236I	CGCG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	2 cut(s)	203, 264
Bsp143I	GATC	5 cut(s)	136, 304, 393, 403, 451
BspCNI	CTCAG	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	153
BspPI	GGATC	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	5 cut(s)	136, 304, 393, 403, 451
BssSI	CACGAG	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	371
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	229, 388
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	5 cut(s)	139, 307, 396, 406, 454
BstMAI	GTCTC	2 cut(s)	203, 264
BstMBI	GATC	5 cut(s)	136, 304, 393, 403, 451
BstNI	CCWGG	1 cut(s)	48
BstPAI	GACNNNNGTC	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	344, 466
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	238
CfoI	GCGC	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	292, 398
Csp6I	GTAC	1 cut(s)	91
CviJI	RGCY	5 cut(s)	8, 79, 158, 236, 460
CviKI_1	RGCY	5 cut(s)	8, 79, 158, 236, 460
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	5 cut(s)	138, 306, 395, 405, 453
DpnII	GATC	5 cut(s)	136, 304, 393, 403, 451
Eco47I	GGWCC	2 cut(s)	292, 398
Eco57I	CTGAAG	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	46
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	2 cut(s)	333, 480
Fsp4HI	GCNGC	2 cut(s)	333, 480
FspBI	CTAG	1 cut(s)	63
FspI	TGCGCA	1 cut(s)	434
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	2 cut(s)	333, 480
GsuI	CTGGAG	1 cut(s)	303
HhaI	GCGC	1 cut(s)	435
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HinfI	GANTC	2 cut(s)	20, 30
HphI	GGTGA	1 cut(s)	314
Hpy188I	TCNGA	4 cut(s)	25, 233, 393, 456
Hpy188III	TCNNGA	4 cut(s)	98, 320, 371, 401
HpyAV	CCTTC	3 cut(s)	78, 160, 164
HpyCH4III	ACNGT	2 cut(s)	229, 388
HpyCH4V	TGCA	2 cut(s)	182, 347
HpyF3I	CTNAG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	5 cut(s)	136, 304, 393, 403, 451
LpnPI	CCDG	9 cut(s)	33, 60, 111, 250, 263, 285, 296, 333, 414
Lsp1109I	GCAGC	2 cut(s)	344, 466
LweI	GCATC	2 cut(s)	61, 169
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	5 cut(s)	138, 306, 395, 405, 453
MboI	GATC	5 cut(s)	136, 304, 393, 403, 451
MboII	GAAGA	3 cut(s)	127, 200, 299
MluCI	AATT	2 cut(s)	414, 510
MnlI	CCTC	3 cut(s)	54, 68, 148
MslI	CAYNNNNRTG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	153
NdeII	GATC	5 cut(s)	136, 304, 393, 403, 451
NmuCI	GTSAC	1 cut(s)	220
NsbI	TGCGCA	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	20, 30
PkrI	GCNGC	2 cut(s)	334, 481
PshAI	GACNNNNGTC	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	292, 398
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	245
SatI	GCNGC	2 cut(s)	333, 480
Sau3AI	GATC	5 cut(s)	136, 304, 393, 403, 451
Sau96I	GGNCC	2 cut(s)	292, 398
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	3 cut(s)	10, 89, 477
SfaNI	GCATC	2 cut(s)	61, 169
SinI	GGWCC	2 cut(s)	292, 398
SmiMI	CAYNNNNRTG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	414, 510
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	229, 388
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	2 cut(s)	414, 510
TfiI	GAWTC	2 cut(s)	20, 30
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	2 cut(s)	332, 479
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	17, 22
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	2 cut(s)	292, 398
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.