RchiOBHm_Chr2g0124041

Asparagine synthetase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
37387370 .. 37388747
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49628

Sequence Viewer

Length: 393 bp
ATGACCATTAGGTGTCTTTTGTCCGGCGGCTTGGACTTATCACTTGTTGCTGCTGCGGCTTGTCGCTATTTGGCTAAATTAGAAGCTGCACTTCAGTGGGGATCCAGTTCCATACCTTTTGCGTCAGCTGGGAGATCAGAAGGGATAGATGCACTTGAAGTTATCTACCATCTTGAGACATATGATGTGAACACTGTCAGAGCCAGAACTCCAATGTTTCTTAAGTCAAATAGAACAAGATTGAGAATGAATTTTCTGATATCTTATTACACCCATTCTGTGGTGTATATAAACAGATTACAATCATACTACAATGTACTACAACTATTGTGTACTACTGTTCTACACAACATATACAAGGTAAGTAGTTATAACAATATATTCCCTTGTTAG

Protein Analysis

130

Amino Acids

14.72

Weight (kDa)

9.16

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis pycom01g05790
rosa_chinensis RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AccB7I CCANNNNNTGG 1 cut(s) 280
AciI CCGC 2 cut(s) 27, 56
AclWI GGATC 2 cut(s) 96, 109
AcsI RAATTY 1 cut(s) 250
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 2 cut(s) 318, 334
AfiI CCNNNNNNNGG 1 cut(s) 280
AflII CTTAAG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 158
AleI CACNNNNGTG 1 cut(s) 94
AluBI AGCT 2 cut(s) 86, 128
AluI AGCT 2 cut(s) 86, 128
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 2 cut(s) 96, 109
ApeKI GCWGC 3 cut(s) 50, 53, 86
ApoI RAATTY 1 cut(s) 250
BamHI GGATCC 1 cut(s) 101
BbvI GCAGC 3 cut(s) 37, 40, 73
BccI CCATC 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 170
BfrI CTTAAG 1 cut(s) 221
BisI GCNGC 5 cut(s) 28, 51, 54, 57, 87
BlsI GCNGC 5 cut(s) 29, 52, 55, 58, 88
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 194
BsaBI GATNNNNATC 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 301
BseJI GATNNNNATC 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 3 cut(s) 37, 40, 73
BseYI CCCAGC 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 72
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 101, 134
BspACI CCGC 2 cut(s) 27, 56
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 2 cut(s) 96, 109
BspTI CTTAAG 1 cut(s) 221
BsrI ACTGG 1 cut(s) 105
BssMI GATC 2 cut(s) 101, 134
Bst4CI ACNGT 2 cut(s) 196, 340
BstAFI CTTAAG 1 cut(s) 221
BstKTI GATC 2 cut(s) 104, 137
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 2 cut(s) 101, 134
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstV1I GCAGC 3 cut(s) 37, 40, 73
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
BtsIMutI CAGTG 2 cut(s) 101, 192
CseI GACGC 1 cut(s) 111
Csp6I GTAC 2 cut(s) 317, 333
CviJI RGCY 6 cut(s) 30, 59, 74, 86, 128, 203
CviKI_1 RGCY 6 cut(s) 30, 59, 74, 86, 128, 203
CviQI GTAC 2 cut(s) 317, 333
DpnI GATC 2 cut(s) 103, 136
DpnII GATC 2 cut(s) 101, 134
Eco32I GATATC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 77
EcoRV GATATC 1 cut(s) 261
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FauNDI CATATG 1 cut(s) 181
Fnu4HI GCNGC 5 cut(s) 28, 51, 54, 57, 87
Fsp4HI GCNGC 5 cut(s) 28, 51, 54, 57, 87
GluI GCNGC 5 cut(s) 28, 51, 54, 57, 87
GsaI CCCAGC 1 cut(s) 132
HapII CCGG 1 cut(s) 24
HgaI GACGC 1 cut(s) 111
HpaII CCGG 1 cut(s) 24
Hpy166II GTNNAC 2 cut(s) 190, 333
Hpy188I TCNGA 3 cut(s) 139, 200, 258
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 2 cut(s) 190, 333
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 2 cut(s) 196, 340
HpyCH4V TGCA 2 cut(s) 89, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
Kzo9I GATC 2 cut(s) 101, 134
LpnPI CCDG 4 cut(s) 37, 114, 118, 217
Lsp1109I GCAGC 3 cut(s) 37, 40, 73
LweI GCATC 1 cut(s) 139
MalI GATC 2 cut(s) 103, 136
MboI GATC 2 cut(s) 101, 134
MflI RGATCY 1 cut(s) 101
MluCI AATT 2 cut(s) 77, 250
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 128
MspCI CTTAAG 1 cut(s) 221
MspI CCGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeI CATATG 1 cut(s) 181
NdeII GATC 2 cut(s) 101, 134
NlaIV GGNNCC 1 cut(s) 103
OliI CACNNNNGTG 1 cut(s) 94
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 5 cut(s) 29, 52, 55, 58, 88
PsiI TTATAA 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 103
PsuI RGATCY 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 2 cut(s) 318, 334
RsaNI GTAC 2 cut(s) 317, 333
RseI CAYNNNNRTG 1 cut(s) 94
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 5 cut(s) 28, 51, 54, 57, 87
Sau3AI GATC 2 cut(s) 101, 134
SetI ASST 5 cut(s) 14, 88, 118, 130, 363
SfaNI GCATC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 94
SmlI CTYRAG 2 cut(s) 173, 221
SmoI CTYRAG 2 cut(s) 173, 221
Sse9I AATT 2 cut(s) 77, 250
SsiI CCGC 2 cut(s) 27, 56
TaaI ACNGT 2 cut(s) 196, 340
TasI AATT 2 cut(s) 77, 250
TatI WGTACW 2 cut(s) 316, 332
TauI GCSGC 2 cut(s) 30, 59
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 2 cut(s) 101, 199
TseI GCWGC 3 cut(s) 50, 53, 86
TspDTI ATGAA 1 cut(s) 263
TspRI CASTG 2 cut(s) 101, 199
Van91I CCANNNNNTGG 1 cut(s) 280
Vha464I CTTAAG 1 cut(s) 221
XapI RAATTY 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.