Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

25969763 .. 25972767

Gene Structure 3005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48715

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTTGTTCAAACTACCTGTACGTATTTACAAATTTATGCATGCAGGAGGGCTGAGAAGGTGGTACAATCCACAATGGTTTTTGGAGAAGATACCATCGACTCCTTATGATCCCATTGTTTTTCGCGAGGCTTTTGAGAAGGCTGTGTTAAAGAGACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCTGGAGGATTGGACTCATCACTCGTTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCACGTCAGTGGGGGTCACAATTACATACCTTTTGTGTTGGCTTGGAGGGTTCTCCAGATTTGAAAGCAGCAAGAGAAGTTGCAGATTATCTTGGAACTCATCATCACGAGTTTCACTTTACTGTTCAGGAAGGCATAGATGCACTTCAAGAAGTTATCTACCATATTGAGACATATGATGTGACCACTGTCAGTGCCAGCACTCCAATGTTTCTTATGTCTCGCAAAATTAAATCTTTGGGAGTAAAAATGGTCCTTTCTGGTGAAGGTTCGGATGAAATCTTTGGTGGCTACTTGTATTTCCACAAGGCACCAAACAAGGAGGAGTTTCACCAAGAAACATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

200

Amino Acids

22.68

Weight (kDa)

6.5

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	41 - 193	7.9e-54	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	565
AccII	CGCG	1 cut(s)	126
AclWI	GGATC	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	32
AfaI	GTAC	3 cut(s)	21, 65, 171
AgsI	TTSAA	3 cut(s)	10, 319, 404
AjiI	CACGTC	1 cut(s)	260
AleI	CACNNNNGTG	1 cut(s)	262
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw26I	GTCTC	3 cut(s)	148, 419, 480
AlwI	GGATC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	254
ApeKI	GCWGC	3 cut(s)	218, 254, 323
ApoI	RAATTY	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	530, 578
AvaII	GGWCC	1 cut(s)	508
BaeI	ACNNNNGTAYC	2 cut(s)	153, 186
BanI	GGYRCC	1 cut(s)	565
BauI	CACGAG	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	205, 241, 335
BccI	CCATC	1 cut(s)	103
BcoDI	GTCTC	3 cut(s)	148, 419, 480
BfaI	CTAG	1 cut(s)	601
BisI	GCNGC	3 cut(s)	219, 255, 324
BlsI	GCNGC	3 cut(s)	220, 256, 325
Bme18I	GGWCC	1 cut(s)	508
BmgBI	CACGTC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	567
BmsI	GCATC	1 cut(s)	385
BoxI	GACNNNNGTC	1 cut(s)	443
BpmI	CTGGAG	2 cut(s)	213, 294
BsaAI	YACGTR	1 cut(s)	23
BseGI	GGATG	1 cut(s)	535
BseMII	CTCAG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	3 cut(s)	205, 241, 335
BsgI	GTGCAG	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	565
BsmAI	GTCTC	3 cut(s)	148, 419, 480
Bsp143I	GATC	1 cut(s)	109
Bsp68I	TCGCGA	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	567
BspPI	GGATC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	565
BssMI	GATC	1 cut(s)	109
BssSI	CACGAG	1 cut(s)	362
Bst2BI	CACGAG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	379, 445
BstBAI	YACGTR	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	42, 454
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	3 cut(s)	148, 419, 480
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNSI	RCATGY	2 cut(s)	44, 600
BstPAI	GACNNNNGTC	1 cut(s)	443
BstSNI	TACGTA	1 cut(s)	23
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	3 cut(s)	205, 241, 335
BtrI	CACGTC	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	535
BtsIMutI	CAGTG	3 cut(s)	269, 441, 454
BtuMI	TCGCGA	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	42, 454
CaiI	CAGNNNCTG	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	508
Csp6I	GTAC	3 cut(s)	20, 64, 170
CviAII	CATG	2 cut(s)	41, 597
CviJI	RGCY	8 cut(s)	52, 131, 143, 227, 242, 254, 297, 546
CviKI_1	RGCY	8 cut(s)	52, 131, 143, 227, 242, 254, 297, 546
CviQI	GTAC	3 cut(s)	20, 64, 170
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eco105I	TACGTA	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	508
EcoT22I	ATGCAT	1 cut(s)	42
FaeI	CATG	2 cut(s)	44, 600
FatI	CATG	2 cut(s)	40, 596
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	3 cut(s)	219, 255, 324
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	3 cut(s)	219, 255, 324
FspBI	CTAG	1 cut(s)	601
GluI	GCNGC	3 cut(s)	219, 255, 324
GsuI	CTGGAG	2 cut(s)	213, 294
Hin1II	CATG	2 cut(s)	44, 600
HinfI	GANTC	2 cut(s)	100, 203
HphI	GGTGA	2 cut(s)	530, 578
Hpy188I	TCNGA	2 cut(s)	250, 529
Hpy188III	TCNNGA	6 cut(s)	125, 192, 311, 362, 383, 404
HpyAV	CCTTC	4 cut(s)	51, 133, 380, 515
HpyCH4III	ACNGT	2 cut(s)	379, 445
HpyCH4IV	ACGT	2 cut(s)	22, 259
HpyCH4V	TGCA	5 cut(s)	40, 44, 257, 338, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	22, 259
Hsp92II	CATG	2 cut(s)	44, 600
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	7 cut(s)	30, 30, 177, 324, 368, 466, 501
Lsp1109I	GCAGC	3 cut(s)	205, 241, 335
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	1 cut(s)	601
MaeII	ACGT	2 cut(s)	22, 259
MaeIII	GTNAC	2 cut(s)	270, 436
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	1 cut(s)	100
MluCI	AATT	3 cut(s)	32, 275, 483
MlyI	GAGTC	2 cut(s)	94, 197
MnlI	CCTC	5 cut(s)	41, 121, 188, 295, 571
Mph1103I	ATGCAT	1 cut(s)	42
MseI	TTAA	2 cut(s)	149, 486
MslI	CAYNNNNRTG	2 cut(s)	262, 461
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	44, 600
NlaIV	GGNNCC	1 cut(s)	567
NmuCI	GTSAC	2 cut(s)	270, 436
NruI	TCGCGA	1 cut(s)	126
NsiI	ATGCAT	1 cut(s)	42
NspI	RCATGY	2 cut(s)	44, 600
OliI	CACNNNNGTG	1 cut(s)	262
PaeI	GCATGC	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	220, 256, 325
PleI	GAGTC	2 cut(s)	94, 197
PpsI	GAGTC	2 cut(s)	94, 197
Ppu21I	YACGTR	1 cut(s)	23
PshAI	GACNNNNGTC	1 cut(s)	443
PspN4I	GGNNCC	1 cut(s)	567
PspPI	GGNCC	1 cut(s)	508
PstNI	CAGNNNCTG	1 cut(s)	254
RruI	TCGCGA	1 cut(s)	126
RsaI	GTAC	3 cut(s)	21, 65, 171
RsaNI	GTAC	3 cut(s)	20, 64, 170
RseI	CAYNNNNRTG	2 cut(s)	262, 461
SaqAI	TTAA	2 cut(s)	149, 486
SatI	GCNGC	3 cut(s)	219, 255, 324
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	2 cut(s)	94, 197
SetI	ASST	7 cut(s)	19, 25, 62, 256, 262, 287, 526
SfaNI	GCATC	1 cut(s)	385
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	2 cut(s)	262, 461
SnaBI	TACGTA	1 cut(s)	23
SphI	GCATGC	1 cut(s)	44
Sse9I	AATT	3 cut(s)	32, 275, 483
SspMI	CTAG	1 cut(s)	601
TaaI	ACNGT	2 cut(s)	379, 445
TaiI	ACGT	2 cut(s)	25, 262
TaqI	TCGA	1 cut(s)	98
TasI	AATT	3 cut(s)	32, 275, 483
Tru1I	TTAA	2 cut(s)	149, 486
Tru9I	TTAA	2 cut(s)	149, 486
TscAI	CASTG	3 cut(s)	269, 448, 454
TseFI	GTSAC	2 cut(s)	270, 436
TseI	GCWGC	3 cut(s)	218, 254, 323
Tsp45I	GTSAC	2 cut(s)	270, 436
TspDTI	ATGAA	1 cut(s)	546
TspRI	CASTG	3 cut(s)	269, 448, 454
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	2 cut(s)	44, 600
XspI	CTAG	1 cut(s)	601
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.