Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000473

Physical Location & Seq

Genomic Coordinates Forward (+)

25866228 .. 25871773

Gene Structure 5546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48703

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAAAGCTGTAAGTGATGATTGTGAAAGGTTCACATCATTTCCTCCTGGGCATTTATACTCTAGCAAACAAGGAGGGCTGAGAAGGTGGTACAATCCACAATGGGTTTTGGAGAAGATACCATCGACTCCTTATGATCCCATTGTTTTACGTGAGGCTTTTGAGAAGGCTGTGTTAATGAGACTTATGACAGATGTACCATTCGGTGTTCTTTTGTCTGGAGGATTGGACTCATCACTCGTTGCTGCTGTGGCTTGTCGCTATTTGGCTAAATCAGAAGCTGCACGTCAGTGGGGGTCACAATTACATACCTTTTGTGTTGGCTTGGAGGGTTCTCCAGATTTGAAAGCAGCAAGAGAAGTTGCAGATTATCTTGGAACTCATCATCACGAGTTGCACTTTACTGTTCGGGAAGGCATAGATGCACTTGAAGAAGTTATCTACCATATTGAGACATATGTGACCACTGTCAGAGCCAGCACTCCAATGTTTCTTATGTCTCGTAAAATTAAATCTCTAGGAGTAAAAATGGTCCTCTTTGGTGAAGGTTCGGATGAAATCTTTGGTGGCTACTTGTATTTCCACAAGGCACCAAACAAGGAGAAGTTTCACCAAGAAACATGCCAGAAGATTAAAGGTCTTCATCTGTATGACTGTCTGAGGGCCAACAAATCGGCATCAGCTGGGGGTGTTGAGGCTCGTGTACCGTTTCTTGACAAAGAATTTGTCAAGACTGCTATGGACATTGATCCAGAATGGAAAATGATCAGGCCTGATCTTGGAAGAATTGAGAAGTGGGTCTTACGCAAAGCATTCGATGATGATCAGAAGCCATATTTACCAAAGCACATCTTGTACAGGCAGAAGGAGCAGTTTAGTGATGGTGTCGGTTACAGCTGGATTGAGGGGTTGAAAGATCATGCAAACAAACAAGTAACAGATTCGATGCTGATGAACGCAAGCTTTATCTACCCTGAAAACACTCCGACTACAAAAGAAGGATACTACTATAGGACTATCTTTGAGAAATATTTTCCAAAGAATGCTGCGAGATCGACAGTTCCTGGTGGTCCAAGTGTGGCATGCAGCACAGCAAAAGCTGTGGAGTGGGATGCAGAATGGTCCAAAAACCCCGATTTATCTGGTCGTGCTGCACTTGGTATACATACAGCTGTGTATGAGGAATCCAAAGATGTAAAGACTGGAAGTCTTGTGAGTGACTCTCCACAGAAACTTGTAAAAGGGGTTGCAGAGAAAGTGGCTGCAGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

424

Amino Acids

47.65

Weight (kDa)

7.64

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	50 - 200	6.6e-52	Asparagine synthase
Asn_synthase	PF00733	198 - 350	8.3e-32	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000473)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10240 AT5G10240 AT5G65010 AT5G65010
fragaria_vesca	FvH4_1g20910 FvH4_1g20910 FvH4_1g29202 FvH4_3g23760 FvH4_3g42550
malus_domestica	MD01G1029700.v1.1 MD15G1324200.v1.1
prunus_persica	Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1 Prupe.6G186800_v2.0.a1
pyrus_communis	pycom01g05790
rosa_chinensis	RchiOBHm_Chr2g0113551 RchiOBHm_Chr2g0113591 RchiOBHm_Chr2g0113641 RchiOBHm_Chr2g0113651 RchiOBHm_Chr2g0113711 RchiOBHm_Chr2g0113721 RchiOBHm_Chr2g0113831 RchiOBHm_Chr2g0113841 RchiOBHm_Chr2g0113851 RchiOBHm_Chr2g0113911 RchiOBHm_Chr2g0113941 RchiOBHm_Chr2g0113991 RchiOBHm_Chr2g0114001 RchiOBHm_Chr2g0114041 RchiOBHm_Chr2g0114051 RchiOBHm_Chr2g0114061 RchiOBHm_Chr2g0114071 RchiOBHm_Chr2g0114081 RchiOBHm_Chr2g0114101 RchiOBHm_Chr2g0114131 RchiOBHm_Chr2g0114141 RchiOBHm_Chr2g0114261 RchiOBHm_Chr2g0114271 RchiOBHm_Chr2g0114291 RchiOBHm_Chr2g0124041
rosa_laevigata	RLG00000018073 RLG00000018076 RLG00000018078 RLG00000018084 RLG00000018086 RLG00000018088 RLG00000018094 RLG00000018095
rosa_multiflora	Rmu_sc0000881.1_g000007 Rmu_sc0000929.1_g000008 Rmu_sc0000929.1_g000017 Rmu_sc0000929.1_g000029 Rmu_sc0000929.1_g000039 Rmu_sc0001699.1_g000005 Rmu_sc0004283.1_g000004 Rmu_sc0007010.1_g000001 Rmu_sc0007415.1_g000028 Rmu_sc0007415.1_g000045 Rmu_sc0009639.1_g000009 Rmu_sc0010543.1_g000008 Rmu_sc0011941.1_g000022 Rmu_sc0018769.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129150 Rroxscaffold_2G00130050 Rroxscaffold_2G00130070 Rroxscaffold_2G00130090
rosa_rugosa	Rorug02G0188100 Rorug02G0188100 Rorug02G0189700 Rorug02G0190000 Rorug02G0190000 Rorug03G0301100
rosa_samantha	Rh2AG242700 Rh2AG243100 Rh2AG245300 Rh2AG246800 Rh2BG256600 Rh2DG253800 Rh6CG172600
rosa_wichuraiana	Rw0G014630 Rw2G018450 Rw2G018500 Rw2G018980 Rw2G019030 Rw2G019050 Rw2G019100 Rw2G019130 Rw2G019190 Rw2G019420 Rw5G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	589
AccI	GTMKAC	1 cut(s)	1162
AclWI	GGATC	2 cut(s)	131, 743
AcsI	RAATTY	1 cut(s)	722
AfaI	GTAC	4 cut(s)	92, 198, 705, 857
AfiI	CCNNNNNNNGG	1 cut(s)	779
AgsI	TTSAA	3 cut(s)	346, 431, 913
AhdI	GACNNNNNGTC	1 cut(s)	1206
AjiI	CACGTC	1 cut(s)	287
AjnI	CCWGG	2 cut(s)	46, 1063
AleI	CACNNNNGTG	1 cut(s)	289
AluBI	AGCT	7 cut(s)	8, 281, 683, 897, 963, 1100, 1172
AluI	AGCT	7 cut(s)	8, 281, 683, 897, 963, 1100, 1172
Alw26I	GTCTC	3 cut(s)	175, 446, 504
AlwI	GGATC	2 cut(s)	131, 743
AlwNI	CAGNNNCTG	2 cut(s)	281, 1064
AoxI	GGCC	2 cut(s)	663, 770
ApeKI	GCWGC	7 cut(s)	245, 281, 350, 1046, 1086, 1151, 1262
ApoI	RAATTY	1 cut(s)	722
ArsI	GACNNNNNNTTYG	4 cut(s)	707, 711, 739, 743
AspS9I	GGNCC	4 cut(s)	532, 663, 1070, 1122
AsuHPI	GGTGA	2 cut(s)	554, 602
AvaII	GGWCC	3 cut(s)	532, 1070, 1122
BaeI	ACNNNNGTAYC	2 cut(s)	180, 213
BanI	GGYRCC	1 cut(s)	589
BauI	CACGAG	2 cut(s)	389, 699
BbsI	GAAGAC	1 cut(s)	632
BbvI	GCAGC	7 cut(s)	232, 268, 362, 1033, 1098, 1138, 1249
BccI	CCATC	2 cut(s)	130, 875
BcgI	CGANNNNNNTGC	2 cut(s)	796, 830
BciT130I	CCWGG	2 cut(s)	48, 1065
BciVI	GTATCC	1 cut(s)	995
BclI	TGATCA	2 cut(s)	765, 823
BcoDI	GTCTC	3 cut(s)	175, 446, 504
BfaI	CTAG	2 cut(s)	63, 518
BfmI	CTRYAG	2 cut(s)	1009, 1263
BfuI	GTATCC	1 cut(s)	995
BisI	GCNGC	7 cut(s)	246, 282, 351, 1047, 1087, 1152, 1263
BlsI	GCNGC	7 cut(s)	247, 283, 352, 1048, 1088, 1153, 1264
Bme1390I	CCNGG	2 cut(s)	48, 1065
Bme18I	GGWCC	3 cut(s)	532, 1070, 1122
BmeRI	GACNNNNNGTC	1 cut(s)	1206
BmgBI	CACGTC	1 cut(s)	287
BmgT120I	GGNCC	4 cut(s)	532, 663, 1070, 1122
BmiI	GGNNCC	1 cut(s)	591
BmrFI	CCNGG	2 cut(s)	48, 1065
BmsI	GCATC	4 cut(s)	412, 686, 936, 1102
BoxI	GACNNNNGTC	1 cut(s)	467
BpiI	GAAGAC	1 cut(s)	632
BplI	GAGNNNNNCTC	2 cut(s)	1207, 1239
BpmI	CTGGAG	2 cut(s)	240, 321
BsaAI	YACGTR	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	822
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	779
Bse1I	ACTGG	1 cut(s)	1207
Bse8I	GATNNNNATC	1 cut(s)	822
BseBI	CCWGG	2 cut(s)	48, 1065
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	2 cut(s)	559, 1117
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	1 cut(s)	779
BseMII	CTCAG	2 cut(s)	71, 650
BseNI	ACTGG	1 cut(s)	1207
BseXI	GCAGC	7 cut(s)	232, 268, 362, 1033, 1098, 1138, 1249
BseYI	CCCAGC	1 cut(s)	683
BsgI	GTGCAG	2 cut(s)	267, 1137
BshFI	GGCC	2 cut(s)	665, 772
BshNI	GGYRCC	1 cut(s)	589
BslI	CCNNNNNNNGG	1 cut(s)	779
BsmAI	GTCTC	3 cut(s)	175, 446, 504
BsmI	GAATGC	2 cut(s)	812, 1048
BsnI	GGCC	2 cut(s)	665, 772
Bsp1407I	TGTACA	1 cut(s)	855
Bsp143I	GATC	7 cut(s)	136, 748, 765, 775, 823, 916, 1052
BspANI	GGCC	2 cut(s)	665, 772
BspCNI	CTCAG	2 cut(s)	72, 651
BspLI	GGNNCC	1 cut(s)	591
BspMAI	CTGCAG	1 cut(s)	1267
BspPI	GGATC	2 cut(s)	131, 743
BspT107I	GGYRCC	1 cut(s)	589
BsrGI	TGTACA	1 cut(s)	855
BsrI	ACTGG	1 cut(s)	1207
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	7 cut(s)	136, 748, 765, 775, 823, 916, 1052
BssNAI	GTATAC	1 cut(s)	1163
BssSI	CACGAG	2 cut(s)	389, 699
Bst1107I	GTATAC	1 cut(s)	1163
Bst2BI	CACGAG	2 cut(s)	389, 699
Bst2UI	CCWGG	2 cut(s)	48, 1065
Bst4CI	ACNGT	5 cut(s)	406, 469, 656, 708, 1060
BstAUI	TGTACA	1 cut(s)	855
BstBAI	YACGTR	1 cut(s)	152
BstC8I	GCNNGC	3 cut(s)	478, 961, 1084
BstDEI	CTNAG	2 cut(s)	80, 659
BstF5I	GGATG	2 cut(s)	559, 1117
BstKTI	GATC	7 cut(s)	139, 751, 768, 778, 826, 919, 1055
BstMAI	GTCTC	3 cut(s)	175, 446, 504
BstMBI	GATC	7 cut(s)	136, 748, 765, 775, 823, 916, 1052
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 868
BstNI	CCWGG	2 cut(s)	48, 1065
BstNSI	RCATGY	2 cut(s)	624, 1086
BstPAI	GACNNNNGTC	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	46, 1063
BstSFI	CTRYAG	2 cut(s)	1009, 1263
BstV1I	GCAGC	7 cut(s)	232, 268, 362, 1033, 1098, 1138, 1249
BstV2I	GAAGAC	1 cut(s)	632
BstZ17I	GTATAC	1 cut(s)	1163
BsuI	GTATCC	1 cut(s)	995
BsuRI	GGCC	2 cut(s)	665, 772
BtrI	CACGTC	1 cut(s)	287
BtsCI	GGATG	2 cut(s)	559, 1117
BtsIMutI	CAGTG	2 cut(s)	296, 465
Cac8I	GCNNGC	3 cut(s)	478, 961, 1084
CaiI	CAGNNNCTG	2 cut(s)	281, 1064
Cfr13I	GGNCC	4 cut(s)	532, 663, 1070, 1122
Csp6I	GTAC	4 cut(s)	91, 197, 704, 856
CspCI	CAANNNNNGTGG	2 cut(s)	1083, 1118
CviAII	CATG	3 cut(s)	621, 920, 1083
CviQI	GTAC	4 cut(s)	91, 197, 704, 856
DdeI	CTNAG	2 cut(s)	80, 659
DpnI	GATC	7 cut(s)	138, 750, 767, 777, 825, 918, 1054
DpnII	GATC	7 cut(s)	136, 748, 765, 775, 823, 916, 1052
DriI	GACNNNNNGTC	1 cut(s)	1206
Eam1105I	GACNNNNNGTC	1 cut(s)	1206
Eco147I	AGGCCT	1 cut(s)	772
Eco47I	GGWCC	3 cut(s)	532, 1070, 1122
EcoRII	CCWGG	2 cut(s)	46, 1063
FaeI	CATG	3 cut(s)	624, 923, 1086
FalI	AAGNNNNNCTT	4 cut(s)	785, 817, 836, 868
FatI	CATG	3 cut(s)	620, 919, 1082
FauNDI	CATATG	1 cut(s)	457
FbaI	TGATCA	2 cut(s)	765, 823
FblI	GTMKAC	1 cut(s)	1162
Fnu4HI	GCNGC	7 cut(s)	246, 282, 351, 1047, 1087, 1152, 1263
FokI	GGATG	2 cut(s)	566, 1124
Fsp4HI	GCNGC	7 cut(s)	246, 282, 351, 1047, 1087, 1152, 1263
FspBI	CTAG	2 cut(s)	63, 518
GluI	GCNGC	7 cut(s)	246, 282, 351, 1047, 1087, 1152, 1263
GsaI	CCCAGC	1 cut(s)	687
GsuI	CTGGAG	2 cut(s)	240, 321
HaeIII	GGCC	2 cut(s)	665, 772
Hin1II	CATG	3 cut(s)	624, 923, 1086
HindIII	AAGCTT	1 cut(s)	961
HinfI	GANTC	5 cut(s)	127, 230, 941, 1184, 1220
HphI	GGTGA	2 cut(s)	554, 602
Hpy166II	GTNNAC	3 cut(s)	33, 704, 1163
Hpy188I	TCNGA	6 cut(s)	277, 473, 553, 660, 828, 987
Hpy188III	TCNNGA	7 cut(s)	219, 338, 389, 410, 713, 730, 752
Hpy8I	GTNNAC	3 cut(s)	33, 704, 1163
HpyAV	CCTTC	6 cut(s)	78, 160, 407, 539, 859, 992
HpyCH4III	ACNGT	5 cut(s)	406, 469, 656, 708, 1060
HpyCH4IV	ACGT	2 cut(s)	151, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 868
HpyF3I	CTNAG	2 cut(s)	80, 659
HpySE526I	ACGT	2 cut(s)	151, 286
Hsp92II	CATG	3 cut(s)	624, 923, 1086
Ksp22I	TGATCA	2 cut(s)	765, 823
Kzo9I	GATC	7 cut(s)	136, 748, 765, 775, 823, 916, 1052
LmnI	GCTCC	1 cut(s)	868
Lsp1109I	GCAGC	7 cut(s)	232, 268, 362, 1033, 1098, 1138, 1249
LweI	GCATC	4 cut(s)	412, 686, 936, 1102
MaeI	CTAG	2 cut(s)	63, 518
MaeII	ACGT	2 cut(s)	151, 286
MaeIII	GTNAC	5 cut(s)	297, 460, 890, 934, 1217
MalI	GATC	7 cut(s)	138, 750, 767, 777, 825, 918, 1054
MboI	GATC	7 cut(s)	136, 748, 765, 775, 823, 916, 1052
MboII	GAAGA	5 cut(s)	127, 443, 632, 640, 795
MluCI	AATT	4 cut(s)	302, 507, 722, 786
MlyI	GAGTC	3 cut(s)	121, 224, 1214
MmeI	TCCRAC	1 cut(s)	1010
MseI	TTAA	3 cut(s)	176, 510, 633
MslI	CAYNNNNRTG	3 cut(s)	289, 485, 648
MspA1I	CMGCKG	3 cut(s)	683, 897, 1172
MspR9I	CCNGG	2 cut(s)	48, 1065
Mva1269I	GAATGC	2 cut(s)	812, 1048
MvaI	CCWGG	2 cut(s)	48, 1065
MwoI	GCNNNNNNNGC	2 cut(s)	251, 868
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	7 cut(s)	136, 748, 765, 775, 823, 916, 1052
NlaIII	CATG	3 cut(s)	624, 923, 1086
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	3 cut(s)	297, 460, 1217
NspI	RCATGY	2 cut(s)	624, 1086
OliI	CACNNNNGTG	1 cut(s)	289
PaeI	GCATGC	1 cut(s)	1086
PceI	AGGCCT	1 cut(s)	772
PctI	GAATGC	2 cut(s)	812, 1048
PfeI	GAWTC	2 cut(s)	941, 1184
PkrI	GCNGC	7 cut(s)	247, 283, 352, 1048, 1088, 1153, 1264
PleI	GAGTC	3 cut(s)	121, 224, 1214
PpsI	GAGTC	3 cut(s)	121, 224, 1214
Ppu21I	YACGTR	1 cut(s)	152
PshAI	GACNNNNGTC	1 cut(s)	467
Psp6I	CCWGG	2 cut(s)	46, 1063
PspFI	CCCAGC	1 cut(s)	683
PspGI	CCWGG	2 cut(s)	46, 1063
PspN4I	GGNNCC	1 cut(s)	591
PspPI	GGNCC	4 cut(s)	532, 663, 1070, 1122
PstI	CTGCAG	1 cut(s)	1267
PstNI	CAGNNNCTG	2 cut(s)	281, 1064
PvuII	CAGCTG	3 cut(s)	683, 897, 1172
RsaI	GTAC	4 cut(s)	92, 198, 705, 857
RsaNI	GTAC	4 cut(s)	91, 197, 704, 856
RseI	CAYNNNNRTG	3 cut(s)	289, 485, 648
SaqAI	TTAA	3 cut(s)	176, 510, 633
SatI	GCNGC	7 cut(s)	246, 282, 351, 1047, 1087, 1152, 1263
Sau3AI	GATC	7 cut(s)	136, 748, 765, 775, 823, 916, 1052
Sau96I	GGNCC	4 cut(s)	532, 663, 1070, 1122
SchI	GAGTC	3 cut(s)	121, 224, 1214
ScrFI	CCNGG	2 cut(s)	48, 1065
SfaNI	GCATC	4 cut(s)	412, 686, 936, 1102
SfcI	CTRYAG	2 cut(s)	1009, 1263
SinI	GGWCC	3 cut(s)	532, 1070, 1122
SmiMI	CAYNNNNRTG	3 cut(s)	289, 485, 648
SphI	GCATGC	1 cut(s)	1086
Sse9I	AATT	4 cut(s)	302, 507, 722, 786
SseBI	AGGCCT	1 cut(s)	772
SspI	AATATT	1 cut(s)	1031
SspMI	CTAG	2 cut(s)	63, 518
StuI	AGGCCT	1 cut(s)	772
StyD4I	CCNGG	2 cut(s)	46, 1063
TaaI	ACNGT	5 cut(s)	406, 469, 656, 708, 1060
TaiI	ACGT	2 cut(s)	154, 289
TaqI	TCGA	4 cut(s)	125, 816, 944, 1055
TasI	AATT	4 cut(s)	302, 507, 722, 786
TatI	WGTACW	1 cut(s)	855
TfiI	GAWTC	2 cut(s)	941, 1184
Tru1I	TTAA	3 cut(s)	176, 510, 633
Tru9I	TTAA	3 cut(s)	176, 510, 633
TscAI	CASTG	2 cut(s)	296, 472
TseFI	GTSAC	3 cut(s)	297, 460, 1217
TseI	GCWGC	7 cut(s)	245, 281, 350, 1046, 1086, 1151, 1262
Tsp45I	GTSAC	3 cut(s)	297, 460, 1217
TspDTI	ATGAA	4 cut(s)	17, 570, 632, 968
TspRI	CASTG	2 cut(s)	296, 472
VpaK11BI	GGWCC	3 cut(s)	532, 1070, 1122
XapI	RAATTY	1 cut(s)	722
XceI	RCATGY	2 cut(s)	624, 1086
XmiI	GTMKAC	1 cut(s)	1162
XspI	CTAG	2 cut(s)	63, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.