FvH4_2g29820
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000493
Physical Location & Seq
Forward (+)
23046012 .. 23053523
7512 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29820.t1

Sequence Viewer

Length: 4356 bp
ATGGAGAGTAGTAGCGGAGATGTATACAGAGTGAGCAGTGCTCGTCTGAGCAGTTCAAACATTTGGAGGAACAGTACCATGGATGTTTTCTCCAAGTCTTCACACGATGAAGAAGATGAAGAAGCACTGAAATGGGCTGCCATTGAAAAACTGCCAACTTACCTGCGTATAAGGAGAGGCATTTTCACTGAGGAAGAAGGCGAAGCCAGAGAGATTGACATCAAGAATCTTGGGTTGCTAGAGAGAAAGAATGTGTTGGAGAGGCTGGTGAAAGTTGCAGATGAAGATAATGAGAGGTTCTTGATGAAGCTCAAGAACCGGATTGATCGGGTTGGACTTGAGTTTCCGACGATTGAAGTCCGGTTTGAGCATTTGAGTGTTGAAGCAGAAGCTTATGTAGGAGGGAGGGCGCTGCCTACAATCTTTAACTTTTCAGCTAATATCTTGGAGGGCTTCCTGAGTTTCTGTCGCATTATTCCAACTAGAAAGCATCCATTTCCAATCCTTGATGATGTTAGTGGAATTATCAAACCAAAGAGAATGACATTGCTTTTAGGTCCCCCAAGCTCTGGAAAAACCACACTACTTTTGGCTTTGGCTGGAAAACTTGCTAAAGATCTAAAATCTTCTGGGAGAGTTGTATATAACGGACATGGGATGGAAGAGTTTGTACCGGAGAGAACATCAGCTTATATAAGTCAGTATGATCTCCACATAGGGGAAATGACAGTGAGAGAAACACTGGCTTTCTCAGCAAGGTGTCAAGGGGTGGGAGGACGTTATGAAATGTTGGCAGAGTTATCAAGGAGAGAAAAGGAAGCCAATATTATGCCAGAGAAAGATCTTGATATCTACATGAAGGCTGCATCATTAGAAGGGCAGGAGGCCAGTGTAGTTACAGATTACATACTCAAGATTTTGGGACTTGAAGTTTGTGCTGACACCATGGTGGGAGATGAAATGTTCCGAGGTATATCTGGTGGACAAAAGAAGCGAGTCACAACAGGGGAGATGCTGGTTGGACCTGCAAGAGCACTTTTTATGGATGAGATATCAACTGGTTTAGACAGTTCAACAACATTTCAGATAGTGAATTCCCTCAGACAATCTATCCACATCCTCAATGGAACTGCTCTTATATCTCTTCTCCAGCCAGCACCTGAAACATATGATCTGTTTGATGACATAATTCTCTTGTCAGATGGGCAAATTGTATACCAAGGTCCCCGTGAAAATGTGCTAGAGTTCTTTGAGTATATGGGCTTCAAATGTCCAGAAAGGAAAGGAGTTGCTGACTTCCTTCAAGAAGTGACATCAAAGAAGGATCAGGAGCAGTACTGGTTTCAGAAAGAAGAGCCTTATAATTTTATATCTTCAAAGGAATTTTCTGAAGCATTTCAGTCATTTCATATTGGTCGAAAACTAGGTGATGAGCTTGCCACTCCATTTGATAAGTCTAAAGGTCACCCTGCCGCTTTAACAACTAAGAAGTATGGTGTTAGCAAGAAGGAACTGCTCAAAGCTTGCATTGCTAGAGAATATTTGCTCATGAAGAGGAATTCATTTGTCTACATTTTCAAAATGACCCAGCTCACTCTATTGGCCTTTATATCAATGACACTTTTTTTCCGTACTGAGATGCCCCGACATACAGTTGAGGATGGTGGGATTTTCATGGGTGCTATGTTCTTTACAATCATCATAATTATGTTCAATGGGTTCTCCGAGCTTGCCTTGACTATCATGAAACTTCCTGTATTTTTCAAGCAAAGAGACCTTCTATTCTATCCTGCCTGGGCATATTCCTTACCAACATGGATCCTTAAGATTCCCATCACCTTTGTTGAAGTTGCCATTTGGGTATTCATGACATACTATGTGATTGGTTTCGATCCAAACCCCGGAAGGTTTTTCAAGCAATATCTTTTGCTCCTATTCGTTAACCAGATGGCATCCGGATTATTCCGATTTATGGGGGCATTAGGGAGGAATATAATTGTTGCCAACACATTCGGTTCTTTTGCTCTACTGGCAGTTCTGGTTATGGGTGGCTTCATCTTATCCCGAGATAATGTGCAGGCGTGGTGGTTATGGGGTTATTGGGTCTCACCAATGATGTACTCCCAGAATGCTATAGCTGTCAATGAATTTCTAGGAGACAGTTGGAGTCATGTTCCTCCCAACTCAAATGAGTCATTAGGGATCATGGTCTTGAAGTCTCGTGGGGTTTTCGTAGAAGCACATTGGTACTGGATCGGAGTAGGAGCTACAATTGGATATATATTTCTATTTAATTTCTTCTACACTGTGGCGTTGCAATATCTTGATCCATTTGGGAAACCTCAGGCAGTACTCTCCAAAGAAGCTTTAGCTGAGAAAACTGCTGCTACAGCTGGAGGAAACCTAGAGCTATCATCAAGAGGAAATAATTCTTCAGAGGCGAAGAATGACAGTCGAAGAAGTGTATCATCTCGAACACAGTCTGCTAGAGTGGGCAGTTTTAATGAAGCCAATGAAAACAGGAAGAAGGGAATGGTTCTTCCTTTTGAACCCCTTTGGATTACATTTGATGAAATCAAATATTCTGTGGACATGCCCCAGGAAATGAAAACTCAAGGAATAACTGAGGAACGGTTACCACTTCTAAAGGGTGTGACTGGTGCTTTTAGGCCTGGAGTTTTAACAGCTCTAATGGGCATAAGTGGTGCTGGAAAGACTACTCTAATGGATGTGTTGGCAGGAAGAAAAACTGGTGGATATATTGAGGGAGACATAACCATTTCCGGGTATCCAAAAAAGCAAGAAACATTTGCTCGTATATCAGGATACTGTGAGCAAACCGATATACACTCTCCTCATGTTACAGTATATGAGTCTTTGGTTTATTCTGCATGGCTCCGCTTGCCTCCTGAGGTTGATTCTGCAACTAGAAAGATGTTTGTTGAGGAAGTCATGGAGCTTGTGGAATTGACATCGATAAGGGAGTCACTTGTGGGATTGCCAGGAGTGAATGGTCTCTCAACTGAGCAGCGTAAAAGGCTGACCATTGCTGTAGAACTTGTTGCCAACCCTTCCATAATATTTATGGATGAGCCAACCTCTGGCCTTGATGCCAGGGCAGCTGCTATTGTAATGAGAACAGTGAGAAATACTGTGGACACAGGGCGTACTGTAGTATGCACTATCCACCAGCCAAGCATTGATATTTTTGATGCTTTCGATGAGCTGTTTCTGTTGAAAAGGGGAGGTGAAGAGATATATGTTGGCCCTCTAGGCCGCCATTCTTCCCAGTTGATCAAGTACTTTGAGGAAATTGAAGGGGTTCCCAAAATCAAGGATGGTTACAATCCAGCAACTTGGATGTTGGAAGTTACTTCAGCAGCCCAGGAAGTTGTTCTCGGTGTTAATTTTACTGATATATACAGGAGCTCAGAGCTATATAGGAGAAACAAGGATCTGATCAAGGAACTAAGTACTCCTCCGCAAGGCACACAAGACTTGTACTTCTCTACGAAATACTCTCAATCTTTCTACTATCAGTGTATGGCTTGTTTATGGAAACAACATCTATCATACTGGCGAAACCCACCATACAGTGCAGTGAGACTCCTATTCACCACTTTCATAGCCTTAATGTTTGGAACAATATTCTGGGATCTTGGCTCCAAAAGGAAAAACCAACAAGATGTATTCAATGCCATGGGTTCCATGTACGCCGCTGTTCTCTTCATTGGAGTACAAAATGCCACATCGGTGCAGCCAGTTGTGGCTGTCGAGAGGACAGTCTTTTATAGAGAAAGGGCTGCTGGAATGTACTCAGCATTGCCATATGCCTTTGGACAGGTTGTGATTGAGCTTCCATACATATTTGTCCAGACTGTCATATATGGAGTCATAGTTTATGCCATGATTGGATTCGACTGGACAGTGAGCAAGTTCCTTTGGTATCTCTTCTTCATGTACTTCACTTTCTTATATTTCACATTCTATGGGATGATGACTGTCGCTGTTACGCCCAACCACAACATTGCTGCCATAGTGTCCTCTGCTTTCTATGCAATATGGAACCTTTTCTCAGGATTCATCATTCCCCGAACAAGAATGCCAATTTGGTGGAGATGGTACTATTGGATCTGCCCGGTTTCATATACATTGTATGGACTGGTTGCTTCACAGTTTGGAGACATAAAAGAAGTAATGGAGTCAGGAGAAAGTGTGGAGGACTTTGTGAGGAACTACTTTGGTTACAGACACGACTTAGTAGGTATTATCGCGGTTGTTCTTGTCGGGATTTCAGTGCTTTTCGGGTTCACCTTTGCCTTCTCGATCAAGGCATTCAACTTCCAAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1452

Amino Acids

164.48

Weight (kDa)

6.32

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 94 - 144 4.5e-07 ABC-transporter N-terminal
ABC_tran PF00005 169 - 350 5e-14 ABC transporter
ABC2_membrane PF01061 505 - 717 1.6e-46 ABC-2 type transporter
PDR_assoc PF08370 722 - 784 4.1e-28 Plant PDR ABC transporter associated
ABC_tran PF00005 882 - 1034 5.8e-20 ABC transporter
ABC2_membrane PF01061 1179 - 1393 9.8e-65 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1362
Acc36I ACCTGC 2 cut(s) 171, 1033
AccB7I CCANNNNNTGG 2 cut(s) 569, 3101
AccI GTMKAC 3 cut(s) 24, 1215, 1569
AccII CGCG 1 cut(s) 4274
AccIII TCCGGA 1 cut(s) 1955
AciI CCGC 7 cut(s) 15, 1473, 2899, 3277, 3482, 3717, 4274
AcsI RAATTY 4 cut(s) 1093, 1382, 1558, 2147
AcuI CTGAAG 3 cut(s) 1410, 2418, 3360
AfiI CCNNNNNNNGG 7 cut(s) 569, 718, 1901, 1972, 2784, 3101, 3485
AflII CTTAAG 1 cut(s) 1823
AjnI CCWGG 6 cut(s) 1793, 2598, 2671, 3001, 3113, 3384
AjuI GAANNNNNNNTTGG 2 cut(s) 4093, 4125
AleI CACNNNNGTG 2 cut(s) 947, 3752
Alw21I GWGCWC 3 cut(s) 43, 1036, 3431
Alw26I GTCTC 8 cut(s) 1767, 2110, 2151, 2223, 2763, 3020, 3598, 4176
AlwNI CAGNNNCTG 1 cut(s) 1160
Ama87I CYCGRG 1 cut(s) 2064
Aor13HI TCCGGA 1 cut(s) 1955
AoxI GGCC 6 cut(s) 885, 1602, 2669, 3103, 3265, 3274
ApoI RAATTY 4 cut(s) 1093, 1382, 1558, 2147
ArsI GACNNNNNNTTYG 2 cut(s) 915, 947
Asp700I GAANNNNTTC 5 cut(s) 1395, 2428, 3321, 3393, 4070
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 4 cut(s) 557, 1022, 1223, 3266
AsuC2I CCSGG 3 cut(s) 1902, 2785, 4139
AsuHPI GGTGA 8 cut(s) 280, 1439, 1457, 1828, 2100, 3260, 3607, 4303
AvaI CYCGRG 1 cut(s) 2064
AvaII GGWCC 3 cut(s) 557, 1022, 1223
AxyI CCTNAGG 2 cut(s) 2343, 2910
BamHI GGATCC 1 cut(s) 1818
BanII GRGCYC 1 cut(s) 3431
BarI GAAGNNNNNNTAC 6 cut(s) 654, 686, 1247, 1279, 3938, 3970
BauI CACGAG 1 cut(s) 2220
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 3 cut(s) 43, 1036, 3431
BccI CCATC 7 cut(s) 652, 1196, 1655, 1841, 1942, 3332, 4113
BciT130I CCWGG 6 cut(s) 1795, 2600, 2673, 3003, 3115, 3386
BciVI GTATCC 2 cut(s) 2799, 2819
BclI TGATCA 2 cut(s) 3294, 3459
BcnI CCSGG 3 cut(s) 1902, 2785, 4139
BcoDI GTCTC 8 cut(s) 1767, 2110, 2151, 2223, 2763, 3020, 3598, 4176
BfmI CTRYAG 4 cut(s) 2133, 2388, 3051, 3171
BfoI RGCGCY 1 cut(s) 413
BfrI CTTAAG 1 cut(s) 1823
BfuAI ACCTGC 2 cut(s) 171, 1033
BfuI GTATCC 2 cut(s) 2799, 2819
BglI GCCNNNNNGGC 1 cut(s) 3273
BglII AGATCT 2 cut(s) 616, 841
BmcAI AGTACT 4 cut(s) 1337, 2352, 3302, 3475
Bme1390I CCNGG 9 cut(s) 1795, 1902, 2600, 2673, 2785, 3003, 3115, 3386, 4139
Bme18I GGWCC 3 cut(s) 557, 1022, 1223
BmeT110I CYCGRG 1 cut(s) 2064
BmgT120I GGNCC 4 cut(s) 557, 1022, 1223, 3266
BmiI GGNNCC 8 cut(s) 559, 1225, 1820, 2897, 3324, 3664, 3706, 4067
BmrFI CCNGG 9 cut(s) 1795, 1902, 2600, 2673, 2785, 3003, 3115, 3386, 4139
BmrI ACTGGG 1 cut(s) 3283
BmsI GCATC 7 cut(s) 499, 875, 1002, 1629, 1961, 3100, 3202
BmuI ACTGGG 1 cut(s) 3283
BpiI GAAGAC 1 cut(s) 90
BplI GAGNNNNNCTC 4 cut(s) 25, 57, 3083, 3115
BpmI CTGGAG 3 cut(s) 1133, 2415, 2694
BpuEI CTTGAG 4 cut(s) 296, 359, 896, 2598
BpuMI CCSGG 3 cut(s) 1902, 2785, 4139
Bsa29I ATCGAT 1 cut(s) 2975
BsaBI GATNNNNATC 2 cut(s) 218, 1832
BsaI GGTCTC 3 cut(s) 1767, 2110, 3020
BsaWI WCCGGW 4 cut(s) 318, 360, 673, 1955
BsaXI ACNNNNNCTCC 6 cut(s) 58, 88, 3882, 3912, 4200, 4230
Bsc4I CCNNNNNNNGG 7 cut(s) 569, 718, 1901, 1972, 2784, 3101, 3485
Bse21I CCTNAGG 2 cut(s) 2343, 2910
Bse3DI GCAATG 5 cut(s) 545, 1527, 3045, 3821, 4026
Bse8I GATNNNNATC 2 cut(s) 218, 1832
BseAI TCCGGA 1 cut(s) 1955
BseBI CCWGG 6 cut(s) 1795, 2600, 2673, 3003, 3115, 3386
BseCI ATCGAT 1 cut(s) 2975
BseJI GATNNNNATC 2 cut(s) 218, 1832
BseLI CCNNNNNNNGG 7 cut(s) 569, 718, 1901, 1972, 2784, 3101, 3485
BseMI GCAATG 5 cut(s) 545, 1527, 3045, 3821, 4026
BseRI GAGGAG 2 cut(s) 2844, 3468
BseYI CCCAGC 1 cut(s) 1587
BsgI GTGCAG 3 cut(s) 2096, 3618, 3776
Bsh1236I CGCG 1 cut(s) 4274
BshFI GGCC 6 cut(s) 887, 1604, 2671, 3105, 3267, 3276
BshVI ATCGAT 1 cut(s) 2975
BsiHKAI GWGCWC 3 cut(s) 43, 1036, 3431
BsiHKCI CYCGRG 1 cut(s) 2064
BsiSI CCGG 7 cut(s) 319, 361, 674, 1902, 1956, 2784, 4139
BslFI GGGAC 3 cut(s) 543, 936, 1209
BslI CCNNNNNNNGG 7 cut(s) 569, 718, 1901, 1972, 2784, 3101, 3485
BsmAI GTCTC 8 cut(s) 1767, 2110, 2151, 2223, 2763, 3020, 3598, 4176
BsmFI GGGAC 3 cut(s) 543, 936, 1209
BsmI GAATGC 3 cut(s) 2134, 4107, 4334
BsnI GGCC 6 cut(s) 887, 1604, 2671, 3105, 3267, 3276
Bso31I GGTCTC 3 cut(s) 1767, 2110, 3020
BsoBI CYCGRG 1 cut(s) 2064
Bsp1286I GDGCHC 3 cut(s) 43, 1036, 3431
Bsp13I TCCGGA 1 cut(s) 1955
Bsp19I CCATGG 3 cut(s) 78, 945, 3699
BspACI CCGC 7 cut(s) 15, 1473, 2899, 3277, 3482, 3717, 4274
BspANI GGCC 6 cut(s) 887, 1604, 2671, 3105, 3267, 3276
BspDI ATCGAT 1 cut(s) 2975
BspEI TCCGGA 1 cut(s) 1955
BspFNI CGCG 1 cut(s) 4274
BspHI TCATGA 3 cut(s) 1548, 1743, 1866
BspLI GGNNCC 8 cut(s) 559, 1225, 1820, 2897, 3324, 3664, 3706, 4067
BspMI ACCTGC 2 cut(s) 171, 1033
BspQI GCTCTTC 1 cut(s) 1347
BspTI CTTAAG 1 cut(s) 1823
BspTNI GGTCTC 3 cut(s) 1767, 2110, 3020
BsrDI GCAATG 5 cut(s) 545, 1527, 3045, 3821, 4026
BssNAI GTATAC 2 cut(s) 25, 1216
BssSI CACGAG 1 cut(s) 2220
BssT1I CCWWGG 4 cut(s) 78, 945, 1219, 3699
Bst1107I GTATAC 2 cut(s) 25, 1216
Bst2BI CACGAG 1 cut(s) 2220
Bst2UI CCWGG 6 cut(s) 1795, 2600, 2673, 3003, 3115, 3386
Bst6I CTCTTC 7 cut(s) 657, 1149, 1347, 1547, 3246, 3731, 3956
BstAFI CTTAAG 1 cut(s) 1823
BstC8I GCNNGC 6 cut(s) 1155, 1437, 1525, 1731, 2079, 2903
BstDSI CCRYGG 3 cut(s) 78, 945, 3699
BstEII GGTNACC 2 cut(s) 1463, 2634
BstENI CCTNNNNNAGG 1 cut(s) 3483
BstFNI CGCG 1 cut(s) 4274
BstH2I RGCGCY 1 cut(s) 413
BstHHI GCGC 1 cut(s) 412
BstMAI GTCTC 8 cut(s) 1767, 2110, 2151, 2223, 2763, 3020, 3598, 4176
BstMWI GCNNNNNNNGC 9 cut(s) 752, 1529, 2030, 2390, 2902, 3037, 3119, 3273, 4055
BstNI CCWGG 6 cut(s) 1795, 2600, 2673, 3003, 3115, 3386
BstNSI RCATGY 1 cut(s) 2596
BstPI GGTNACC 2 cut(s) 1463, 2634
BstSCI CCNGG 9 cut(s) 1793, 1900, 2598, 2671, 2783, 3001, 3113, 3384, 4137
BstSFI CTRYAG 4 cut(s) 2133, 2388, 3051, 3171
BstUI CGCG 1 cut(s) 4274
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 6 cut(s) 616, 841, 1818, 3454, 3655, 4131
BstXI CCANNNNNNTGG 2 cut(s) 3357, 4113
BstYI RGATCY 6 cut(s) 616, 841, 1818, 3454, 3655, 4131
BstZ17I GTATAC 2 cut(s) 25, 1216
Bsu15I ATCGAT 1 cut(s) 2975
Bsu36I CCTNAGG 2 cut(s) 2343, 2910
BsuI GTATCC 2 cut(s) 2799, 2819
BsuRI GGCC 6 cut(s) 887, 1604, 2671, 3105, 3267, 3276
BsuTUI ATCGAT 1 cut(s) 2975
BtgI CCRYGG 3 cut(s) 78, 945, 3699
BtsI GCAGTG 2 cut(s) 43, 3606
BveI ACCTGC 2 cut(s) 171, 1033
Cac8I GCNNGC 6 cut(s) 1155, 1437, 1525, 1731, 2079, 2903
CaiI CAGNNNCTG 1 cut(s) 1160
CciI TCATGA 3 cut(s) 1548, 1743, 1866
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 4 cut(s) 557, 1022, 1223, 3266
ClaI ATCGAT 1 cut(s) 2975
CspCI CAANNNNNGTGG 2 cut(s) 1429, 1464
Eam1104I CTCTTC 7 cut(s) 657, 1149, 1347, 1547, 3246, 3731, 3956
EarI CTCTTC 7 cut(s) 657, 1149, 1347, 1547, 3246, 3731, 3956
Ecl136II GAGCTC 1 cut(s) 3429
Eco130I CCWWGG 4 cut(s) 78, 945, 1219, 3699
Eco147I AGGCCT 1 cut(s) 2671
Eco24I GRGCYC 1 cut(s) 3431
Eco31I GGTCTC 3 cut(s) 1767, 2110, 3020
Eco32I GATATC 2 cut(s) 850, 1053
Eco47I GGWCC 3 cut(s) 557, 1022, 1223
Eco53kI GAGCTC 1 cut(s) 3429
Eco57I CTGAAG 3 cut(s) 1410, 2418, 3360
Eco81I CCTNAGG 2 cut(s) 2343, 2910
Eco88I CYCGRG 1 cut(s) 2064
Eco91I GGTNACC 2 cut(s) 1463, 2634
EcoICRI GAGCTC 1 cut(s) 3429
EcoNI CCTNNNNNAGG 1 cut(s) 3483
EcoO109I RGGNCCY 2 cut(s) 557, 1223
EcoO65I GGTNACC 2 cut(s) 1463, 2634
EcoRI GAATTC 2 cut(s) 1093, 1558
EcoRII CCWGG 6 cut(s) 1793, 2598, 2671, 3001, 3113, 3384
EcoRV GATATC 2 cut(s) 850, 1053
EcoT14I CCWWGG 4 cut(s) 78, 945, 1219, 3699
EcoT38I GRGCYC 1 cut(s) 3431
ErhI CCWWGG 4 cut(s) 78, 945, 1219, 3699
FaqI GGGAC 3 cut(s) 543, 936, 1209
FauNDI CATATG 2 cut(s) 1168, 3829
FbaI TGATCA 2 cut(s) 3294, 3459
FblI GTMKAC 3 cut(s) 24, 1215, 1569
FriOI GRGCYC 1 cut(s) 3431
GlaI GCGC 1 cut(s) 411
GsaI CCCAGC 1 cut(s) 1591
GsuI CTGGAG 3 cut(s) 1133, 2415, 2694
HaeII RGCGCY 1 cut(s) 413
HaeIII GGCC 6 cut(s) 887, 1604, 2671, 3105, 3267, 3276
HapII CCGG 7 cut(s) 319, 361, 674, 1902, 1956, 2784, 4139
HhaI GCGC 1 cut(s) 412
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HincII GTYRAC 1 cut(s) 1942
HindII GTYRAC 1 cut(s) 1942
HindIII AAGCTT 3 cut(s) 390, 1521, 2364
HpaI GTTAAC 1 cut(s) 1942
HpaII CCGG 7 cut(s) 319, 361, 674, 1902, 1956, 2784, 4139
HphI GGTGA 8 cut(s) 280, 1439, 1457, 1828, 2100, 3260, 3607, 4303
Hpy166II GTNNAC 8 cut(s) 25, 983, 1216, 1570, 1942, 2590, 3157, 4311
Hpy8I GTNNAC 8 cut(s) 25, 983, 1216, 1570, 1942, 2590, 3157, 4311
Hpy99I CGWCG 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 778
HpyF10VI GCNNNNNNNGC 9 cut(s) 752, 1529, 2030, 2390, 2902, 3037, 3119, 3273, 4055
HpySE526I ACGT 1 cut(s) 778
HspAI GCGC 1 cut(s) 410
Kpn2I TCCGGA 1 cut(s) 1955
Ksp22I TGATCA 2 cut(s) 3294, 3459
KspAI GTTAAC 1 cut(s) 1942
LguI GCTCTTC 1 cut(s) 1347
LmnI GCTCC 7 cut(s) 1330, 1935, 2264, 2901, 2956, 3426, 3668
LweI GCATC 7 cut(s) 499, 875, 1002, 1629, 1961, 3100, 3202
MaeII ACGT 1 cut(s) 778
MfeI CAATTG 1 cut(s) 2271
MflI RGATCY 6 cut(s) 616, 841, 1818, 3454, 3655, 4131
MhlI GDGCHC 3 cut(s) 43, 1036, 3431
MlyI GAGTC 8 cut(s) 1005, 2176, 2201, 2882, 2993, 3600, 3900, 4211
MmeI TCCRAC 7 cut(s) 237, 313, 371, 503, 1000, 2144, 3345
MroI TCCGGA 1 cut(s) 1955
MroXI GAANNNNTTC 5 cut(s) 1395, 2428, 3321, 3393, 4070
MseI TTAA 9 cut(s) 426, 1478, 1824, 1941, 2292, 2502, 2681, 3405, 3632
MslI CAYNNNNRTG 5 cut(s) 130, 375, 947, 1706, 3752
MspA1I CMGCKG 3 cut(s) 2393, 3122, 3719
MspCI CTTAAG 1 cut(s) 1823
MspI CCGG 7 cut(s) 319, 361, 674, 1902, 1956, 2784, 4139
MspR9I CCNGG 9 cut(s) 1795, 1902, 2600, 2673, 2785, 3003, 3115, 3386, 4139
MunI CAATTG 1 cut(s) 2271
Mva1269I GAATGC 3 cut(s) 2134, 4107, 4334
MvaI CCWGG 6 cut(s) 1795, 2600, 2673, 3003, 3115, 3386
MvnI CGCG 1 cut(s) 4274
MwoI GCNNNNNNNGC 9 cut(s) 752, 1529, 2030, 2390, 2902, 3037, 3119, 3273, 4055
NciI CCSGG 3 cut(s) 1902, 2785, 4139
NcoI CCATGG 3 cut(s) 78, 945, 3699
NdeI CATATG 2 cut(s) 1168, 3829
NlaIV GGNNCC 8 cut(s) 559, 1225, 1820, 2897, 3324, 3664, 3706, 4067
NmuCI GTSAC 5 cut(s) 997, 1309, 1463, 2653, 2985
NspI RCATGY 1 cut(s) 2596
OliI CACNNNNGTG 2 cut(s) 947, 3752
PagI TCATGA 3 cut(s) 1548, 1743, 1866
PceI AGGCCT 1 cut(s) 2671
PciSI GCTCTTC 1 cut(s) 1347
PctI GAATGC 3 cut(s) 2134, 4107, 4334
PdmI GAANNNNTTC 5 cut(s) 1395, 2428, 3321, 3393, 4070
PfeI GAWTC 5 cut(s) 226, 1828, 2918, 3915, 4080
PflMI CCANNNNNTGG 2 cut(s) 569, 3101
PleI GAGTC 8 cut(s) 1004, 2175, 2200, 2881, 2992, 3600, 3899, 4210
PpsI GAGTC 8 cut(s) 1004, 2175, 2200, 2881, 2992, 3600, 3899, 4210
PpuMI RGGWCCY 2 cut(s) 557, 1223
PsiI TTATAA 1 cut(s) 1362
Psp124BI GAGCTC 1 cut(s) 3431
Psp5II RGGWCCY 2 cut(s) 557, 1223
Psp6I CCWGG 6 cut(s) 1793, 2598, 2671, 3001, 3113, 3384
PspEI GGTNACC 2 cut(s) 1463, 2634
PspFI CCCAGC 1 cut(s) 1587
PspGI CCWGG 6 cut(s) 1793, 2598, 2671, 3001, 3113, 3384
PspN4I GGNNCC 8 cut(s) 559, 1225, 1820, 2897, 3324, 3664, 3706, 4067
PspPI GGNCC 4 cut(s) 557, 1022, 1223, 3266
PspPPI RGGWCCY 2 cut(s) 557, 1223
PstNI CAGNNNCTG 1 cut(s) 1160
PsuI RGATCY 6 cut(s) 616, 841, 1818, 3454, 3655, 4131
PvuII CAGCTG 2 cut(s) 2393, 3122
RseI CAYNNNNRTG 5 cut(s) 130, 375, 947, 1706, 3752
SacI GAGCTC 1 cut(s) 3431
SapI GCTCTTC 1 cut(s) 1347
SaqAI TTAA 9 cut(s) 426, 1478, 1824, 1941, 2292, 2502, 2681, 3405, 3632
Sau96I GGNCC 4 cut(s) 557, 1022, 1223, 3266
ScaI AGTACT 4 cut(s) 1337, 2352, 3302, 3475
SchI GAGTC 8 cut(s) 1005, 2176, 2201, 2882, 2993, 3600, 3900, 4211
ScrFI CCNGG 9 cut(s) 1795, 1902, 2600, 2673, 2785, 3003, 3115, 3386, 4139
SduI GDGCHC 3 cut(s) 43, 1036, 3431
SfaNI GCATC 7 cut(s) 499, 875, 1002, 1629, 1961, 3100, 3202
SfcI CTRYAG 4 cut(s) 2133, 2388, 3051, 3171
SfiI GGCCNNNNNGGCC 1 cut(s) 3273
SinI GGWCC 3 cut(s) 557, 1022, 1223
SmiMI CAYNNNNRTG 5 cut(s) 130, 375, 947, 1706, 3752
SmlI CTYRAG 5 cut(s) 311, 338, 911, 1823, 2613
SmoI CTYRAG 5 cut(s) 311, 338, 911, 1823, 2613
SseBI AGGCCT 1 cut(s) 2671
SsiI CCGC 7 cut(s) 15, 1473, 2899, 3277, 3482, 3717, 4274
SspI AATATT 5 cut(s) 826, 1541, 2582, 3081, 3648
SstI GAGCTC 1 cut(s) 3431
StuI AGGCCT 1 cut(s) 2671
StyD4I CCNGG 9 cut(s) 1793, 1900, 2598, 2671, 2783, 3001, 3113, 3384, 4137
StyI CCWWGG 4 cut(s) 78, 945, 1219, 3699
TaiI ACGT 1 cut(s) 781
TaqI TCGA 9 cut(s) 1417, 1890, 2455, 2473, 2975, 3219, 3774, 3918, 4325
TatI WGTACW 9 cut(s) 1335, 2118, 2350, 3300, 3473, 3501, 3736, 3813, 3960
TauI GCSGC 3 cut(s) 1475, 3279, 3719
TfiI GAWTC 5 cut(s) 226, 1828, 2918, 3915, 4080
Tru1I TTAA 9 cut(s) 426, 1478, 1824, 1941, 2292, 2502, 2681, 3405, 3632
Tru9I TTAA 9 cut(s) 426, 1478, 1824, 1941, 2292, 2502, 2681, 3405, 3632
TseFI GTSAC 5 cut(s) 997, 1309, 1463, 2653, 2985
Tsp45I GTSAC 5 cut(s) 997, 1309, 1463, 2653, 2985
TspGWI ACGGA 2 cut(s) 663, 1619
Van91I CCANNNNNTGG 2 cut(s) 569, 3101
Vha464I CTTAAG 1 cut(s) 1823
VpaK11BI GGWCC 3 cut(s) 557, 1022, 1223
XagI CCTNNNNNAGG 1 cut(s) 3483
XapI RAATTY 4 cut(s) 1093, 1382, 1558, 2147
XceI RCATGY 1 cut(s) 2596
XcmI CCANNNNNNNNNTGG 3 cut(s) 586, 1121, 3082
XmiI GTMKAC 3 cut(s) 24, 1215, 1569
XmnI GAANNNNTTC 5 cut(s) 1395, 2428, 3321, 3393, 4070
ZrmI AGTACT 4 cut(s) 1337, 2352, 3302, 3475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.