Rmu_ssc0000397.1_g000048
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000397.1
OG0000493
Physical Location & Seq
Forward (+)
186021 .. 192474
6454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000397.1_g000048.1.cds

Sequence Viewer

Length: 4269 bp
atggaagtgttttcaaggtcttttcggggtgaagacgatgaagaagctctcaaatgggctgcaattgagaggttgcctactggtttgcgtatcgggagaggcttgttcattgatggtgagggccaagctagggaggttgatgtcgaaaaccttggtttacttgagaggaagactttgttggagaggctggtgaacaatgcggagaaagataatgagaagttcttgttaaaactcaagaaccgaattgacagagttggacttgatatgccaacaattgaagttcggtttgagcatcttactgtggaggcaaaagtttatttgggaagcagagctctgcctactttactcaactttgccatcaatatgttacagggatggttacattatcttcacatttttccaagtagaaaggcatccttaacaatccttcaaaatgttagtggcattatcaagccccaaagaatgactttgcttttaggtcccccaagttccggaaaaaccacattactattgtctcttgcaggaagacttgataaagatctaagatcttcgggagaagttacgtataatggacacggtatggcggaatttgtagctcagagaacatcagcttatataagtcaaaatgatcttcacataggagaaatgacagtgaaggagacactggctttctcagctagatgtcaaggagttggatcaaattgcgacatgttggcagaattgtctagaagagagaaggaggaaagtatcaaacctgatcccgacattgatatctaccaaaaggcagcagcactagaagggcaggagagtagtgtagttgctgattacattctcaagattttgggacttgaagtttgtgccaatactatggtgggggatgaaatggtaagaggcatctcgggtggagaaagaaagcgagtcacaataggggagatgcttgttggacctgtaagagctctcttcatggatgagatatcaactggcttggacagttcaacgactttccagatagtaaactcactcaggcaatccatccatattcttaggggaactgcagttgtttccctcctacagccagcccccgaaacttatagcctattcgatgatataattctcctatcagatggccaaatagtgtatcagggtccacgtgaaagtgtgctcgacttttttgaattcatggggttcaaatgtcccgagaggaaaggagttgctgacttcttgcaagaggtgacatccaggaaagatcaagagcagtattgggcacgtttacatgagccttacagatttgttactgtcactgagtttgctgacgcattccaggcatttcatattggccagagacttggtgatgagcttgctagtcccttcgacaggtctaaaagccaccgtgctgctttaacagctaagaaatatggtgttaacacgaaggagttgttcagagcttgtatttctagagagtttttgctcatgaagaggaattcatttgcctacattttcaaactggctctacttatcatcttagcttctataacaacaacaatatttctaagagttgagatgcataaaggcactgtgttggatgggggaatctatctgggtgctttgttctttgcagtcattgtagcgatgtttaatggaatatcagagctgaacatggccattatgaaacttcccgtcttttacaagcaaagagacctcctcttctatcctgcatgggcatactcaatacctggatggatgctcaagatcccaatcactttagtagagagtttcatttgggtgatcattacttattatgtcataggatttgatccacatgttgaaaggttcctcaagcagtacatgttactggtgtgcataaaccagatggcgtccggtttgttcaggtgcatggcagcaataggaaggagtgtaatagttgcgagcacatttggaacctttgcattacttgtaatcttggttttgggtggatttgtcttatctcgagaggctgtaccaaaatggtggttgtgggggtactgggtctcaccgttgatgtatggacaaaatgccatagctgtgaatgaattccttggaaagagttggagccatgttccacatggttctacagaatccttgggagttatggtcctgaagtctcacggcattttcccagaagcacattggtattggattggagtagcagctttagttggatacacttttctgttcaacatcatcattactttcgctctacaatacctggatccatttgggaagcctcaggcagtactgtccaaagaaagcatagcggagagaaatggtaacggaactggagagttcattgagctattatcaagaggaaatagatattctgaaagtagtattgaaggtgcaacaagcttgtcatcatgtacaggtggaggaagaagtgatattgctaatgggaaaaggaagcgaggaatggttcttccttttcaacccctttcccttgctttcgatgagatcagatatgccatagacatgccacaggaaatgaaagcacagggtgttaaggaggataggctggaactgttgaaaggtctaaatggtgcttttagaccaggagtcttaacagccctgatgggtgttagtggtgcaggcaagaccactttaatggatgtcttggccggaaggaaaactggtggatacattgagggaagcattgtgatatctgggtactgtaaaaggcaagaaacatttgctcgcatatcaggttattgtgagcaaactgatatccactctcctcatgttacagtctatgaatccctgctgttttctgcttggcttcgactactgcctgaggttgattctgcaactaggaagatgtttatcgaggaagttatggagcttgtggagctgacttcacttaggggagcacttgtgggattaccaggtgtaactggcctttcaactgagcagcgtaaaagactgactattgccgttgagcttgttgcaaatccatctataattttcatggatgagccaacatctggccttgatgccagggcagcagcaatagtgatgagaacagttaggaacacagtggacacaggccgaactgtggtttgcactatccaccagcctagcatagatatattcgaagcttttgatgagcttcttcttctcaaattgggaggtgagccaatatacgccggtccattaggactccattcctcccttctgatcaagtactttgagggaattaatggcgttcctaaagttaaagatggatataaccctgcaacctggatgttggagattacttcagcagcgcaagaggaagctcttggggttaacttcacagatgtgtacaagaaatcagaactatacaagagaactaaagatatgatcaaggaattgtctgtacctccctcaggttctaaggatctgtactttcctactcgctactcgcaatcttttcacacccaatgcatggcttgcctatggaaacaacactggtcgtactggcgaaacccatcatatagtgcagttagactcttattcacaacattcatcgcgttgttgtttggtatgatattttgggatctcgggtcaaaaaggagcaagcagcaagacatcttcaatgcaatgggctctatatattctgctgttatttttcttggggtccagaatgctgcctcagtgcagccaattgtggctgttgagagaacagtgttttacagagaaagagcagctggtatgtactcagctttgccttacgcatttggacagatgatgattgaggttccctacattttcattcagacaattatttatggggttatagtatatgcaatgatgggattcgattggatagtttccaagttcctttggtaccttttcttcatgtacttcaccttattatacttcgcattctatggcatgatgaccatggctctaactcccaaccacaacattgctgctataacttcatcttccttctatgcaatatggaaccttttctcaggatttgtcattcctccatcgagaatacctatatggtggaaatggtactattggatttgccctgttgcttggaccttgtatggaatggccgcttcgcagtttggagacataaagcagagactcgagactggcgaaactgtggaagattttttgacaagctactttggatacaggcacgactttctgggtatcgttgcagtggtggttgtcgggttttcattgctgttcggctttatctttgcttattccattcgagcttttaacttccaaaaaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1422

Amino Acids

159.87

Weight (kDa)

7.55

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 3858
AccB1I GGYRCC 1 cut(s) 3858
AccB7I CCANNNNNTGG 2 cut(s) 3014, 3457
AccII CGCG 1 cut(s) 3542
AccIII TCCGGA 1 cut(s) 491
AciI CCGC 4 cut(s) 200, 584, 2294, 4080
AclWI GGATC 8 cut(s) 703, 752, 1744, 1808, 2243, 2256, 3417, 3576
AcoI YGGCCR 5 cut(s) 1126, 1336, 1659, 2649, 4077
AcsI RAATTY 4 cut(s) 587, 1175, 1480, 2069
AcuI CTGAAG 2 cut(s) 2156, 3273
AcvI CACGTG 1 cut(s) 1151
AcyI GRCGYC 1 cut(s) 1874
AdeI CACNNNGTG 1 cut(s) 2531
AfiI CCNNNNNNNGG 7 cut(s) 130, 491, 1374, 3014, 3085, 3398, 3457
AflIII ACRYGT 3 cut(s) 708, 1819, 1845
AhdI GACNNNNNGTC 1 cut(s) 2588
AjnI CCWGG 8 cut(s) 1238, 1320, 1732, 2244, 2584, 2914, 3026, 3269
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AleI CACNNNNGTG 1 cut(s) 3329
Alw21I GWGCWC 5 cut(s) 334, 958, 1164, 1931, 2902
Alw26I GTCTC 9 cut(s) 519, 653, 1336, 1689, 2032, 2145, 4089, 4102, 4109
AlwI GGATC 8 cut(s) 703, 752, 1744, 1808, 2243, 2256, 3417, 3576
Ama87I CYCGRG 5 cut(s) 898, 1196, 1986, 3572, 4112
Aor13HI TCCGGA 1 cut(s) 491
AoxI GGCC 9 cut(s) 121, 1126, 1336, 1659, 2649, 2926, 3016, 3076, 4077
ApoI RAATTY 4 cut(s) 587, 1175, 1480, 2069
ArsI GACNNNNNNTTYG 2 cut(s) 837, 869
AseI ATTAAT 1 cut(s) 3228
Asp700I GAANNNNTTC 2 cut(s) 2069, 3983
Asp718I GGTACC 1 cut(s) 3858
AspLEI GCGC 1 cut(s) 3298
AspS9I GGNCC 8 cut(s) 121, 479, 944, 1145, 2131, 3179, 3649, 4062
AsuHPI GGTGA 9 cut(s) 41, 128, 202, 1243, 1361, 1795, 2022, 3173, 3871
AsuII TTCGAA 1 cut(s) 3123
AvaI CYCGRG 5 cut(s) 898, 1196, 1986, 3572, 4112
AvaII GGWCC 7 cut(s) 479, 944, 1145, 2131, 3179, 3649, 4062
AxyI CCTNAGG 3 cut(s) 2265, 2823, 3397
BaeGI GKGCMC 1 cut(s) 1267
BalI TGGCCA 3 cut(s) 1128, 1338, 1661
BamHI GGATCC 1 cut(s) 2248
BanI GGYRCC 1 cut(s) 3858
BanII GRGCYC 3 cut(s) 334, 958, 3620
BarI GAAGNNNNNNTAC 2 cut(s) 3851, 3883
BbrPI CACGTG 1 cut(s) 1151
BbsI GAAGAC 3 cut(s) 39, 176, 532
Bbv12I GWGCWC 5 cut(s) 334, 958, 1164, 1931, 2902
BceAI ACGGC 2 cut(s) 2161, 2948
BciT130I CCWGG 8 cut(s) 1240, 1322, 1734, 2246, 2586, 2916, 3028, 3271
BciVI GTATCC 3 cut(s) 2192, 2663, 4151
BclI TGATCA 3 cut(s) 1785, 3207, 3372
BcoDI GTCTC 9 cut(s) 519, 653, 1336, 1689, 2032, 2145, 4089, 4102, 4109
BfaI CTAG 8 cut(s) 129, 678, 726, 794, 1362, 1455, 2841, 3108
BfmI CTRYAG 3 cut(s) 1053, 1070, 2109
BfuI GTATCC 3 cut(s) 2192, 2663, 4151
BglII AGATCT 2 cut(s) 538, 545
BmcAI AGTACT 2 cut(s) 2274, 3215
Bme1390I CCNGG 8 cut(s) 1240, 1322, 1734, 2246, 2586, 2916, 3028, 3271
Bme18I GGWCC 7 cut(s) 479, 944, 1145, 2131, 3179, 3649, 4062
BmeRI GACNNNNNGTC 1 cut(s) 2588
BmeT110I CYCGRG 5 cut(s) 898, 1196, 1986, 3572, 4112
BmgT120I GGNCC 8 cut(s) 121, 479, 944, 1145, 2131, 3179, 3649, 4062
BmrFI CCNGG 8 cut(s) 1240, 1322, 1734, 2246, 2586, 2916, 3028, 3271
BmrI ACTGGG 1 cut(s) 2032
BmsI GCATC 7 cut(s) 301, 422, 903, 924, 1551, 1731, 3013
BmuI ACTGGG 1 cut(s) 2032
BpiI GAAGAC 3 cut(s) 39, 176, 532
BplI GAGNNNNNCTC 2 cut(s) 1686, 1718
BpmI CTGGAG 1 cut(s) 2337
Bpu14I TTCGAA 1 cut(s) 3123
BpuEI CTTGAG 5 cut(s) 182, 218, 818, 1730, 1820
BsaAI YACGTR 2 cut(s) 564, 1151
BsaBI GATNNNNATC 3 cut(s) 537, 1754, 2852
BsaHI GRCGYC 1 cut(s) 1874
BsaI GGTCTC 2 cut(s) 1689, 2032
BsaJI CCNNGG 5 cut(s) 151, 2074, 2118, 3027, 3915
BsaWI WCCGGW 2 cut(s) 491, 1877
BsaXI ACNNNNNCTCC 4 cut(s) 2115, 2145, 2889, 2919
Bsc4I CCNNNNNNNGG 7 cut(s) 130, 491, 1374, 3014, 3085, 3398, 3457
Bse118I RCCGGY 1 cut(s) 3176
Bse21I CCTNAGG 3 cut(s) 2265, 2823, 3397
Bse3DI GCAATG 4 cut(s) 3618, 3825, 3939, 4208
Bse8I GATNNNNATC 3 cut(s) 537, 1754, 2852
BseAI TCCGGA 1 cut(s) 491
BseBI CCWGG 8 cut(s) 1240, 1322, 1734, 2246, 2586, 2916, 3028, 3271
BseDI CCNNGG 5 cut(s) 151, 2074, 2118, 3027, 3915
BseJI GATNNNNATC 3 cut(s) 537, 1754, 2852
BseLI CCNNNNNNNGG 7 cut(s) 130, 491, 1374, 3014, 3085, 3398, 3457
BseMI GCAATG 4 cut(s) 3618, 3825, 3939, 4208
BseRI GAGGAG 2 cut(s) 1691, 2757
BseSI GKGCMC 1 cut(s) 1267
BsgI GTGCAG 3 cut(s) 2640, 3531, 3689
Bsh1236I CGCG 1 cut(s) 3542
BshFI GGCC 9 cut(s) 123, 1128, 1338, 1661, 2651, 2928, 3018, 3078, 4079
BshNI GGYRCC 1 cut(s) 3858
BsiHKAI GWGCWC 5 cut(s) 334, 958, 1164, 1931, 2902
BsiHKCI CYCGRG 5 cut(s) 898, 1196, 1986, 3572, 4112
BsiSI CCGG 4 cut(s) 492, 1878, 2652, 3177
BslFI GGGAC 4 cut(s) 465, 858, 1179, 1350
BslI CCNNNNNNNGG 7 cut(s) 130, 491, 1374, 3014, 3085, 3398, 3457
BsmAI GTCTC 9 cut(s) 519, 653, 1336, 1689, 2032, 2145, 4089, 4102, 4109
BsmFI GGGAC 4 cut(s) 465, 858, 1179, 1350
BsmI GAATGC 3 cut(s) 1316, 3661, 3896
BsnI GGCC 9 cut(s) 123, 1128, 1338, 1661, 2651, 2928, 3018, 3078, 4079
Bso31I GGTCTC 2 cut(s) 1689, 2032
BsoBI CYCGRG 5 cut(s) 898, 1196, 1986, 3572, 4112
Bsp119I TTCGAA 1 cut(s) 3123
Bsp1286I GDGCHC 7 cut(s) 334, 958, 1164, 1267, 1931, 2902, 3620
Bsp13I TCCGGA 1 cut(s) 491
Bsp1407I TGTACA 2 cut(s) 2396, 3333
Bsp19I CCATGG 1 cut(s) 3915
BspACI CCGC 4 cut(s) 200, 584, 2294, 4080
BspANI GGCC 9 cut(s) 123, 1128, 1338, 1661, 2651, 2928, 3018, 3078, 4079
BspEI TCCGGA 1 cut(s) 491
BspFNI CGCG 1 cut(s) 3542
BspHI TCATGA 1 cut(s) 1470
BspMAI CTGCAG 1 cut(s) 1057
BspPI GGATC 8 cut(s) 703, 752, 1744, 1808, 2243, 2256, 3417, 3576
BspT104I TTCGAA 1 cut(s) 3123
BspT107I GGYRCC 1 cut(s) 3858
BspTNI GGTCTC 2 cut(s) 1689, 2032
BsrDI GCAATG 4 cut(s) 3618, 3825, 3939, 4208
BsrFI RCCGGY 1 cut(s) 3176
BsrGI TGTACA 2 cut(s) 2396, 3333
BssAI RCCGGY 1 cut(s) 3176
BssECI CCNNGG 5 cut(s) 151, 2074, 2118, 3027, 3915
BssNI GRCGYC 1 cut(s) 1874
BssT1I CCWWGG 4 cut(s) 151, 2074, 2118, 3915
Bst2UI CCWGG 8 cut(s) 1240, 1322, 1734, 2246, 2586, 2916, 3028, 3271
Bst6I CTCTTC 4 cut(s) 724, 965, 1469, 1709
BstACI GRCGYC 1 cut(s) 1874
BstAPI GCANNNNNTGC 1 cut(s) 3462
BstAUI TGTACA 2 cut(s) 2396, 3333
BstBAI YACGTR 2 cut(s) 564, 1151
BstBI TTCGAA 1 cut(s) 3123
BstC8I GCNNGC 7 cut(s) 1077, 1359, 1927, 2623, 2728, 3463, 3590
BstDSI CCRYGG 1 cut(s) 3915
BstENI CCTNNNNNAGG 2 cut(s) 1372, 3396
BstFNI CGCG 1 cut(s) 3542
BstHHI GCGC 1 cut(s) 3298
BstMAI GTCTC 9 cut(s) 519, 653, 1336, 1689, 2032, 2145, 4089, 4102, 4109
BstMWI GCNNNNNNNGC 6 cut(s) 674, 1322, 1403, 2878, 3032, 3462
BstNI CCWGG 8 cut(s) 1240, 1322, 1734, 2246, 2586, 2916, 3028, 3271
BstNSI RCATGY 4 cut(s) 712, 1823, 1849, 2509
BstSCI CCNGG 8 cut(s) 1238, 1320, 1732, 2244, 2584, 2914, 3026, 3269
BstSFI CTRYAG 3 cut(s) 1053, 1070, 2109
BstSLI GKGCMC 1 cut(s) 1267
BstSNI TACGTA 1 cut(s) 564
BstUI CGCG 1 cut(s) 3542
BstV2I GAAGAC 3 cut(s) 39, 176, 532
BstX2I RGATCY 6 cut(s) 538, 545, 1749, 2248, 3409, 3568
BstXI CCANNNNNNTGG 4 cut(s) 868, 1346, 2007, 2638
BstYI RGATCY 6 cut(s) 538, 545, 1749, 2248, 3409, 3568
Bsu36I CCTNAGG 3 cut(s) 2265, 2823, 3397
BsuI GTATCC 3 cut(s) 2192, 2663, 4151
BsuRI GGCC 9 cut(s) 123, 1128, 1338, 1661, 2651, 2928, 3018, 3078, 4079
BtgI CCRYGG 1 cut(s) 3915
BtgZI GCGATG 2 cut(s) 1643, 3523
BtsI GCAGTG 1 cut(s) 4194
BtsIMutI CAGTG 9 cut(s) 657, 662, 1299, 1572, 3072, 3478, 3672, 3702, 4194
Cac8I GCNNGC 7 cut(s) 1077, 1359, 1927, 2623, 2728, 3463, 3590
CciI TCATGA 1 cut(s) 1470
CfoI GCGC 1 cut(s) 3298
Cfr10I RCCGGY 1 cut(s) 3176
Cfr13I GGNCC 8 cut(s) 121, 479, 944, 1145, 2131, 3179, 3649, 4062
CseI GACGC 2 cut(s) 1322, 1863
CsiI ACCWGGT 1 cut(s) 2914
DraIII CACNNNGTG 1 cut(s) 2531
DriI GACNNNNNGTC 1 cut(s) 2588
EaeI YGGCCR 5 cut(s) 1126, 1336, 1659, 2649, 4077
Eam1104I CTCTTC 4 cut(s) 724, 965, 1469, 1709
Eam1105I GACNNNNNGTC 1 cut(s) 2588
EarI CTCTTC 4 cut(s) 724, 965, 1469, 1709
EciI GGCGGA 1 cut(s) 599
Ecl136II GAGCTC 2 cut(s) 332, 956
Eco105I TACGTA 1 cut(s) 564
Eco130I CCWWGG 4 cut(s) 151, 2074, 2118, 3915
Eco24I GRGCYC 3 cut(s) 334, 958, 3620
Eco31I GGTCTC 2 cut(s) 1689, 2032
Eco32I GATATC 4 cut(s) 772, 975, 2694, 2758
Eco47I GGWCC 7 cut(s) 479, 944, 1145, 2131, 3179, 3649, 4062
Eco53kI GAGCTC 2 cut(s) 332, 956
Eco57I CTGAAG 2 cut(s) 2156, 3273
Eco72I CACGTG 1 cut(s) 1151
Eco81I CCTNAGG 3 cut(s) 2265, 2823, 3397
Eco88I CYCGRG 5 cut(s) 898, 1196, 1986, 3572, 4112
EcoICRI GAGCTC 2 cut(s) 332, 956
EcoNI CCTNNNNNAGG 2 cut(s) 1372, 3396
EcoO109I RGGNCCY 1 cut(s) 479
EcoRI GAATTC 3 cut(s) 1175, 1480, 2069
EcoRII CCWGG 8 cut(s) 1238, 1320, 1732, 2244, 2584, 2914, 3026, 3269
EcoRV GATATC 4 cut(s) 772, 975, 2694, 2758
EcoT14I CCWWGG 4 cut(s) 151, 2074, 2118, 3915
EcoT22I ATGCAT 2 cut(s) 1566, 3458
EcoT38I GRGCYC 3 cut(s) 334, 958, 3620
ErhI CCWWGG 4 cut(s) 151, 2074, 2118, 3915
FalI AAGNNNNNCTT 4 cut(s) 401, 433, 451, 483
FaqI GGGAC 4 cut(s) 465, 858, 1179, 1350
FbaI TGATCA 3 cut(s) 1785, 3207, 3372
FriOI GRGCYC 3 cut(s) 334, 958, 3620
FspBI CTAG 8 cut(s) 129, 678, 726, 794, 1362, 1455, 2841, 3108
GlaI GCGC 1 cut(s) 3297
GsuI CTGGAG 1 cut(s) 2337
HaeIII GGCC 9 cut(s) 123, 1128, 1338, 1661, 2651, 2928, 3018, 3078, 4079
HapII CCGG 4 cut(s) 492, 1878, 2652, 3177
HgaI GACGC 2 cut(s) 1322, 1863
HhaI GCGC 1 cut(s) 3298
Hin1I GRCGYC 1 cut(s) 1874
Hin6I GCGC 1 cut(s) 3296
HinP1I GCGC 1 cut(s) 3296
HincII GTYRAC 2 cut(s) 1423, 3319
HindII GTYRAC 2 cut(s) 1423, 3319
HindIII AAGCTT 2 cut(s) 2383, 3126
HpaI GTTAAC 2 cut(s) 1423, 3319
HpaII CCGG 4 cut(s) 492, 1878, 2652, 3177
HphI GGTGA 9 cut(s) 41, 128, 202, 1243, 1361, 1795, 2022, 3173, 3871
Hpy166II GTNNAC 9 cut(s) 158, 193, 1015, 1148, 1271, 1423, 3070, 3319, 3334
Hpy188I TCNGA 9 cut(s) 600, 1123, 1442, 1648, 2359, 2492, 3207, 3346, 3789
Hpy8I GTNNAC 9 cut(s) 158, 193, 1015, 1148, 1271, 1423, 3070, 3319, 3334
HpyCH4IV ACGT 3 cut(s) 563, 1150, 1267
HpyF10VI GCNNNNNNNGC 6 cut(s) 674, 1322, 1403, 2878, 3032, 3462
HpySE526I ACGT 3 cut(s) 563, 1150, 1267
Hsp92I GRCGYC 1 cut(s) 1874
HspAI GCGC 1 cut(s) 3296
Kpn2I TCCGGA 1 cut(s) 491
KpnI GGTACC 1 cut(s) 3862
Ksp22I TGATCA 3 cut(s) 1785, 3207, 3372
KspAI GTTAAC 2 cut(s) 1423, 3319
LmnI GCTCC 5 cut(s) 2088, 2869, 2878, 2897, 3585
LweI GCATC 7 cut(s) 301, 422, 903, 924, 1551, 1731, 3013
MabI ACCWGGT 1 cut(s) 2914
MaeI CTAG 8 cut(s) 129, 678, 726, 794, 1362, 1455, 2841, 3108
MaeII ACGT 3 cut(s) 563, 1150, 1267
MfeI CAATTG 3 cut(s) 63, 273, 3675
MflI RGATCY 6 cut(s) 538, 545, 1749, 2248, 3409, 3568
MhlI GDGCHC 7 cut(s) 334, 958, 1164, 1267, 1931, 2902, 3620
MlsI TGGCCA 3 cut(s) 1128, 1338, 1661
MluNI TGGCCA 3 cut(s) 1128, 1338, 1661
MlyI GAGTC 5 cut(s) 927, 2598, 3183, 3513, 4104
MmeI TCCRAC 8 cut(s) 159, 235, 673, 922, 1560, 2066, 2176, 3258
Mox20I TGGCCA 3 cut(s) 1128, 1338, 1661
Mph1103I ATGCAT 2 cut(s) 1566, 3458
MroI TCCGGA 1 cut(s) 491
MroXI GAANNNNTTC 2 cut(s) 2069, 3983
MscI TGGCCA 3 cut(s) 1128, 1338, 1661
MslI CAYNNNNRTG 6 cut(s) 362, 1781, 2060, 2504, 2636, 3329
Msp20I TGGCCA 3 cut(s) 1128, 1338, 1661
MspA1I CMGCKG 1 cut(s) 3719
MspI CCGG 4 cut(s) 492, 1878, 2652, 3177
MspR9I CCNGG 8 cut(s) 1240, 1322, 1734, 2246, 2586, 2916, 3028, 3271
MunI CAATTG 3 cut(s) 63, 273, 3675
Mva1269I GAATGC 3 cut(s) 1316, 3661, 3896
MvaI CCWGG 8 cut(s) 1240, 1322, 1734, 2246, 2586, 2916, 3028, 3271
MvnI CGCG 1 cut(s) 3542
MwoI GCNNNNNNNGC 6 cut(s) 674, 1322, 1403, 2878, 3032, 3462
NcoI CCATGG 1 cut(s) 3915
NmuCI GTSAC 3 cut(s) 919, 1231, 1297
NsiI ATGCAT 2 cut(s) 1566, 3458
NspI RCATGY 4 cut(s) 712, 1823, 1849, 2509
NspV TTCGAA 1 cut(s) 3123
OliI CACNNNNGTG 1 cut(s) 3329
PaeR7I CTCGAG 2 cut(s) 1986, 4112
PagI TCATGA 1 cut(s) 1470
PciI ACATGT 3 cut(s) 708, 1819, 1845
PcsI WCGNNNNNNNCGW 1 cut(s) 4119
PctI GAATGC 3 cut(s) 1316, 3661, 3896
PdmI GAANNNNTTC 2 cut(s) 2069, 3983
PfeI GAWTC 5 cut(s) 1590, 2114, 2786, 2831, 3828
PflMI CCANNNNNTGG 2 cut(s) 3014, 3457
PfoI TCCNGGA 1 cut(s) 1238
PleI GAGTC 5 cut(s) 926, 2597, 3183, 3513, 4104
PmaCI CACGTG 1 cut(s) 1151
PmlI CACGTG 1 cut(s) 1151
PpsI GAGTC 5 cut(s) 926, 2597, 3183, 3513, 4104
Ppu21I YACGTR 2 cut(s) 564, 1151
PpuMI RGGWCCY 1 cut(s) 479
PscI ACATGT 3 cut(s) 708, 1819, 1845
PshBI ATTAAT 1 cut(s) 3228
Psp124BI GAGCTC 2 cut(s) 334, 958
Psp5II RGGWCCY 1 cut(s) 479
Psp6I CCWGG 8 cut(s) 1238, 1320, 1732, 2244, 2584, 2914, 3026, 3269
PspCI CACGTG 1 cut(s) 1151
PspGI CCWGG 8 cut(s) 1238, 1320, 1732, 2244, 2584, 2914, 3026, 3269
PspPI GGNCC 8 cut(s) 121, 479, 944, 1145, 2131, 3179, 3649, 4062
PspPPI RGGWCCY 1 cut(s) 479
PstI CTGCAG 1 cut(s) 1057
PsuI RGATCY 6 cut(s) 538, 545, 1749, 2248, 3409, 3568
PvuII CAGCTG 1 cut(s) 3719
RseI CAYNNNNRTG 6 cut(s) 362, 1781, 2060, 2504, 2636, 3329
SacI GAGCTC 2 cut(s) 334, 958
Sau96I GGNCC 8 cut(s) 121, 479, 944, 1145, 2131, 3179, 3649, 4062
ScaI AGTACT 2 cut(s) 2274, 3215
SchI GAGTC 5 cut(s) 927, 2598, 3183, 3513, 4104
ScrFI CCNGG 8 cut(s) 1240, 1322, 1734, 2246, 2586, 2916, 3028, 3271
SduI GDGCHC 7 cut(s) 334, 958, 1164, 1267, 1931, 2902, 3620
SexAI ACCWGGT 1 cut(s) 2914
SfaNI GCATC 7 cut(s) 301, 422, 903, 924, 1551, 1731, 3013
SfcI CTRYAG 3 cut(s) 1053, 1070, 2109
Sfr274I CTCGAG 2 cut(s) 1986, 4112
SfuI TTCGAA 1 cut(s) 3123
SinI GGWCC 7 cut(s) 479, 944, 1145, 2131, 3179, 3649, 4062
SlaI CTCGAG 2 cut(s) 1986, 4112
SmiMI CAYNNNNRTG 6 cut(s) 362, 1781, 2060, 2504, 2636, 3329
SmlI CTYRAG 7 cut(s) 161, 233, 833, 1745, 1835, 1986, 4112
SmoI CTYRAG 7 cut(s) 161, 233, 833, 1745, 1835, 1986, 4112
SnaBI TACGTA 1 cut(s) 564
SsiI CCGC 4 cut(s) 200, 584, 2294, 4080
SspI AATATT 1 cut(s) 1545
SspMI CTAG 8 cut(s) 129, 678, 726, 794, 1362, 1455, 2841, 3108
SstI GAGCTC 2 cut(s) 334, 958
StyD4I CCNGG 8 cut(s) 1238, 1320, 1732, 2244, 2584, 2914, 3026, 3269
StyI CCWWGG 4 cut(s) 151, 2074, 2118, 3915
TaiI ACGT 3 cut(s) 566, 1153, 1270
TatI WGTACW 8 cut(s) 1842, 2272, 2396, 3213, 3333, 3414, 3726, 3873
TauI GCSGC 1 cut(s) 4082
TfiI GAWTC 5 cut(s) 1590, 2114, 2786, 2831, 3828
TscAI CASTG 9 cut(s) 657, 669, 1306, 1579, 3072, 3485, 3672, 3702, 4194
TseFI GTSAC 3 cut(s) 919, 1231, 1297
Tsp45I GTSAC 3 cut(s) 919, 1231, 1297
TspGWI ACGGA 1 cut(s) 2325
TspRI CASTG 9 cut(s) 657, 669, 1306, 1579, 3072, 3485, 3672, 3702, 4194
Van91I CCANNNNNTGG 2 cut(s) 3014, 3457
VpaK11BI GGWCC 7 cut(s) 479, 944, 1145, 2131, 3179, 3649, 4062
VspI ATTAAT 1 cut(s) 3228
XagI CCTNNNNNAGG 2 cut(s) 1372, 3396
XapI RAATTY 4 cut(s) 587, 1175, 1480, 2069
XbaI TCTAGA 2 cut(s) 725, 1454
XceI RCATGY 4 cut(s) 712, 1823, 1849, 2509
XcmI CCANNNNNNNNNTGG 3 cut(s) 868, 2099, 2163
XhoI CTCGAG 2 cut(s) 1986, 4112
XmnI GAANNNNTTC 2 cut(s) 2069, 3983
XspI CTAG 8 cut(s) 129, 678, 726, 794, 1362, 1455, 2841, 3108
ZrmI AGTACT 2 cut(s) 2274, 3215
Zsp2I ATGCAT 2 cut(s) 1566, 3458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.