Rh2AG511300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000493
Physical Location & Seq
Forward (+)
73730843 .. 73759362
28520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG511300.1

Sequence Viewer

Length: 243 bp
ATGCTCTTCAATCCAAATCAGCGCCCAACGCATATCATCAATCACCCACTTGACGCCCAGCAAGCGGTACATCCCGAGCGCGTCATTGCAGATCCTAGGCGTTCAGTCTTCTCCACCTTGAGCTCTTGGAGTCTTGGGGAAAGCGGAGGCCGGAACTCAGGAAGACGAGCAGTCGGAGTAGACAGGAGGAAGGAGCTAAGCAGCTTGATCAGTTTTTTTTTTAATTATAATTTATATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.08

Weight (kDa)

10.74

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AccI GTMKAC 1 cut(s) 180
AccII CGCG 1 cut(s) 81
AciI CCGC 2 cut(s) 65, 144
AclWI GGATC 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 1 cut(s) 10
AhdI GACNNNNNGTC 1 cut(s) 170
AluBI AGCT 3 cut(s) 123, 196, 204
AluI AGCT 3 cut(s) 123, 196, 204
Alw21I GWGCWC 1 cut(s) 125
AlwI GGATC 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 201
AspA2I CCTAGG 1 cut(s) 95
AspLEI GCGC 2 cut(s) 24, 81
AsuHPI GGTGA 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 74
AvrII CCTAGG 1 cut(s) 95
BanII GRGCYC 1 cut(s) 125
BbsI GAAGAC 2 cut(s) 100, 169
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 213
BclI TGATCA 1 cut(s) 207
BfaI CTAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 25
BisI GCNGC 1 cut(s) 202
BlnI CCTAGG 1 cut(s) 95
BlpI GCTNAGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 203
BmeRI GACNNNNNGTC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 74
BpiI GAAGAC 2 cut(s) 100, 169
Bpu1102I GCTNAGC 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 139
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 213
BseYI CCCAGC 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 64
BsnI GGCC 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 2 cut(s) 91, 207
Bsp1720I GCTNAGC 1 cut(s) 197
BspACI CCGC 2 cut(s) 65, 144
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 170
BspFNI CGCG 1 cut(s) 81
BspPI GGATC 1 cut(s) 86
BspQI GCTCTTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 2 cut(s) 91, 207
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 157, 197
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 81
BstH2I RGCGCY 1 cut(s) 25
BstHHI GCGC 2 cut(s) 24, 81
BstKTI GATC 2 cut(s) 94, 210
BstMBI GATC 2 cut(s) 91, 207
BstMWI GCNNNNNNNGC 2 cut(s) 28, 62
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 213
BstV2I GAAGAC 2 cut(s) 100, 169
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 63
CfoI GCGC 2 cut(s) 24, 81
CseI GACGC 2 cut(s) 62, 70
Csp6I GTAC 1 cut(s) 68
CviJI RGCY 4 cut(s) 123, 150, 196, 204
CviKI_1 RGCY 4 cut(s) 123, 150, 196, 204
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 2 cut(s) 157, 197
DpnI GATC 2 cut(s) 93, 209
DpnII GATC 2 cut(s) 91, 207
DriI GACNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 11
Eam1105I GACNNNNNGTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 11
Ecl136II GAGCTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 95
FaiI YATR 4 cut(s) 33, 228, 235, 237
FbaI TGATCA 1 cut(s) 207
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 202
FokI GGATG 1 cut(s) 57
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 1 cut(s) 96
GlaI GCGC 2 cut(s) 23, 80
GluI GCNGC 1 cut(s) 202
GsaI CCCAGC 1 cut(s) 61
HaeII RGCGCY 1 cut(s) 25
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 151
HgaI GACGC 2 cut(s) 62, 70
HhaI GCGC 2 cut(s) 24, 81
Hin1I GRCGYC 1 cut(s) 54
Hin6I GCGC 2 cut(s) 22, 79
HinP1I GCGC 2 cut(s) 22, 79
HinfI GANTC 1 cut(s) 130
HpaII CCGG 1 cut(s) 151
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 2 cut(s) 74, 159
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 62
HpyF3I CTNAG 2 cut(s) 157, 197
Hsp92I GRCGYC 1 cut(s) 54
HspAI GCGC 2 cut(s) 22, 79
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 2 cut(s) 91, 207
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 4 cut(s) 71, 144, 164, 169
Lsp1109I GCAGC 1 cut(s) 213
MaeI CTAG 1 cut(s) 96
MalI GATC 2 cut(s) 93, 209
MboI GATC 2 cut(s) 91, 207
MboII GAAGA 2 cut(s) 100, 174
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 2 cut(s) 223, 229
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 2 cut(s) 140, 180
MseI TTAA 1 cut(s) 222
MspI CCGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 28, 62
NdeII GATC 2 cut(s) 91, 207
PciSI GCTCTTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 203
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PsiI TTATAA 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SacI GAGCTC 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 2 cut(s) 91, 207
SchI GAGTC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 125
SetI ASST 4 cut(s) 119, 125, 198, 206
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 2 cut(s) 223, 229
SsiI CCGC 2 cut(s) 65, 144
SspMI CTAG 1 cut(s) 96
SstI GAGCTC 1 cut(s) 125
StyI CCWWGG 1 cut(s) 95
TasI AATT 2 cut(s) 223, 229
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseI GCWGC 1 cut(s) 201
XmaJI CCTAGG 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.