Rh7BG436600

Aspartokinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
50118833 .. 50121762
2930 bp
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UTR
Exon/CDS
Intron
Rh7BG436600.1

Sequence Viewer

Length: 261 bp
ATGGCAGAGGCTCCCCTAATGACTGAACAAAATGGGTGGAGATCATGTGCAGTGACCACGCTGGGTAGAGATGGTAGTGATTTGACAGCTACAACCATTGGTAAAGCACGTTGGCAGGAACTTGACCATGTTGTGGAAGAACTGGAGAAAATTGTTGTTGTCAATCTTCAGCATCGATCAATAATGTCTCTCATTGGAAATGTGCAGAAATCATCACTAATATTAGAGAAGGTGTTGTACTGTGTTTTGCCAAGTACTTAG

Protein Analysis

86

Amino Acids

9.52

Weight (kDa)

5.57

Isoelectric Point (pI)

55.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 133
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 2 cut(s) 239, 256
AfiI CCNNNNNNNGG 1 cut(s) 133
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 192
BarI GAAGNNNNNNTAC 2 cut(s) 221, 253
BccI CCATC 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 192
BmcAI AGTACT 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 164
Bsa29I ATCGAT 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 147
BseCI ATCGAT 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 147
BseYI CCCAGC 1 cut(s) 61
BsgI GTGCAG 2 cut(s) 69, 224
BshVI ATCGAT 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 41, 176
BspDI ATCGAT 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 147
BssMI GATC 2 cut(s) 41, 176
Bst4CI ACNGT 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 258
BstKTI GATC 2 cut(s) 44, 179
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 41, 176
Bsu15I ATCGAT 1 cut(s) 175
BsuTUI ATCGAT 1 cut(s) 175
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
ClaI ATCGAT 1 cut(s) 175
Csp6I GTAC 2 cut(s) 238, 255
CspCI CAANNNNNGTGG 2 cut(s) 17, 52
CviAII CATG 2 cut(s) 45, 128
CviJI RGCY 2 cut(s) 11, 89
CviKI_1 RGCY 2 cut(s) 11, 89
CviQI GTAC 2 cut(s) 238, 255
DdeI CTNAG 1 cut(s) 258
DpnI GATC 2 cut(s) 43, 178
DpnII GATC 2 cut(s) 41, 176
Eco57I CTGAAG 1 cut(s) 152
FaeI CATG 2 cut(s) 48, 131
FaiI YATR 2 cut(s) 46, 129
FatI CATG 2 cut(s) 44, 127
GsaI CCCAGC 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 164
Hin1II CATG 2 cut(s) 48, 131
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 2 cut(s) 50, 205
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 2 cut(s) 48, 131
Kzo9I GATC 2 cut(s) 41, 176
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 3 cut(s) 47, 101, 128
LweI GCATC 1 cut(s) 181
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 52
MalI GATC 2 cut(s) 43, 178
MboI GATC 2 cut(s) 41, 176
MboII GAAGA 2 cut(s) 149, 158
MluCI AATT 1 cut(s) 150
NdeII GATC 2 cut(s) 41, 176
NlaIII CATG 2 cut(s) 48, 131
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 52
PflMI CCANNNNNTGG 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 12
RsaI GTAC 2 cut(s) 239, 256
RsaNI GTAC 2 cut(s) 238, 255
Sau3AI GATC 2 cut(s) 41, 176
ScaI AGTACT 1 cut(s) 256
SetI ASST 3 cut(s) 91, 112, 234
SfaNI GCATC 1 cut(s) 181
SgeI CNNG 8 cut(s) 57, 70, 74, 120, 128, 134, 140, 155
Sse9I AATT 1 cut(s) 150
SspI AATATT 1 cut(s) 222
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 175
TasI AATT 1 cut(s) 150
TatI WGTACW 2 cut(s) 237, 254
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspRI CASTG 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 133
ZrmI AGTACT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.