RchiOBHm_Chr6g0298911
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000493
Physical Location & Seq
Forward (+)
60166474 .. 60173158
6685 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26837

Sequence Viewer

Length: 4266 bp
ATGGAAGTGTTTTCAAGGTCTTTTCGGGGTGAAGACGATGAAGAAGCTCTCAAATGGGCTGCAATTGAGAGGCTGCCTACTGGTTTGCGTATCGGGAGAGGCTTGTTCATTGATGGTGAGGGCCAAGCTAGGGAGGTTGATGTCGAAAACCTTGGTTTACTTGAGAGGAAGACTTTGTTGGAGAGGCTGGTGAACAATGCGGAGAAAGATAATGAGAAGTTCTTGTTAAAGCTCAAGAACCGAATTGACAGAGTTGGACTTGATATGCCAACAATTGAAGTTCGGTTTGAGCATCTAACTGTGGAGGCAAAAGTTTATTTGGGAAGCAGAGCTCTGCCTACTTTACTCAACTTTGCCATCAATATGTTACAGGGATGGTTACATTATCTTCACATTTTTCCAAGTAGAAAGGCATCTTTAACAATCCTTCAAAATGTTAGTGGCATTATCAAGCCCCAAAGAATGACTTTGCTTTTAGGTCCCCCAAGTTCCGGAAAAACCACATTACTATTGGCTCTTGCAGGAAGACTTGATAAAGATCTAAGATCTTCAGGAGAAGTTACGTATAATGGACACAGTATGGCAGAATTTGTAGCTCAGAGAACATCAGCTTATATAAGTCAAAATGATCTTCACATAGGAGAAATGACAGTGAAGGAGACACTGGCTTTCTCAGCTAGATGTCAAGGAGTTGGATCAAATTGCGACATGTTGGCAGAATTGTCTAGAAGAGAGAAGGAGGAAAATATCAAACCGGATCCCGACATTGATATCTACCAAAAGGCAGCAGCACTAGAAGGGCAGGAGAGTAGTGTAGTTGCTGATTACATTCTCAAGATTTTGGGACTTGAAGTTTGTGCCAATACTATGGTGGGGGATGAAATGGTAAGAGGCATCTCGGGTGGAGAAAGAAAGCGAGTCACAATAGGGGAGATGCTTGTTGGACCTGTAAGAGCTCTCTTCATGGATGAGATATCAACTGGCTTGGACAGTTCAACGACTTTCCAGATAGTAAACTCACTCAGGCAATCCATCCATATTCTTAGGGGAACTGCAGTTGTTTCCCTCCTTCAGCCAGCCCCCGAAACTTACAGCCTATTCGATGATATAATTCTCCTATCAGATGGCCAAATAGTGTATCAGGGTCCACGTGAAAGTGTGCTCGACTTTTTTGAATTCATGGGGTTCAAATGTCCCGAGAGGAAAGGAGTTGCTGACTTCTTGCAAGAGGTGACATCCAGGAAAGATCAAGAGCAGTATTGGGCACGTTTACATGAGCCTTACAGATTTGTTACTGTCACTGAGTTTGCTGACGCATTCCAGGCATTTCATATTGGCCAGAGACTTGGTGATGAGCTTGCTAGTCCCTTCGACAGGTCTAAAAGCCACCGTGCTGCTTTAACAGCTAAGAAATATGGTGTTAACACGAAGGAGTTGTTCAGAGCTTGTATTTCTAGAGAGTTTTTGCTCATGAAGAGGAACTCATTTGCCTACATTTTCAAACTGGCTCTACTTATCATCTTAGCTTCTATAACAACAACAATATTTCTAAGAGTTGAGATGCATAAAGGCACTGTGTTGGATGGGGGAATCTATCTGGGTGCTTTGTTCTTTGCAGTCATTGTAGCGATGTTTAATGGAATATCAGAGCTGAACATGGCCATTATGAAACTTCCCGTCTTTTACAAGCAAAGAGACCTCCTCTTCTATCCTGCATGGGCATACTCAATACCTGGATGGATACTCAAGATCCCAATCACTTTAGTAGAGAGTTTCATTTGGGTGATCATTACTTATTATGTCATAGGATTTGATCCACATGTTGAAAGGTTCCTCAAGCAGTACATGTTACTGGTGTGCATAAACCAGATGGCGTCCGGTTTGTTCAGGTGCATGGCAGCAATAGGAAGGAGTGTAATAGTTGCGAGCACATTTGGAACCTTTGCATTACTTGTAATCTTGGTTTTGGGAGGATTTGTCTTATCTCGAGAGGCTGTACCAAAATGGTGGTTGTGGGGGTACTGGGTCTCGCCGTTGATGTATGGACAAAATGCCATAGCTGTGAATGAATTCCTTGGAAAGAGTTGGAGCCATGTTCCACCTGGTTCTACAGAATCCTTGGGAGTTATGGTCCTGAAGTCTCATGGCATTTTCCCAGAAGCACATTGGTATTGGATTGGAGTAGCAGCTTTAGTTGGATACACTTTTCTGTTCAACATCATCATTGCTTTCGCTCTACAATACCTGGATCCATTTGGGAAGCCTCAGGCAGTACTGTCCAAAGAAAGCATAGCGGAGAGAAATGGTAACGGAACTGGAGAGTTCATTGAGCTATTATCAAGAGGAAATAGATATTCTGAAAGTAGTATTGAAGGTGCAACAAGCTTGTCATCATGTACAGGTGGAGGAAGAAGTGATATTGCTAATGGGAAAAGGAAGCGAGGAATGGTTCTTCCTTTTCAACCCCTTTCCCTTGCTTTCGATGAGATCAGATATGCCATAGATATGCCACAGGAAATGAAAGCACAGGGTGTTGAAGATAGGCTGGAACTGTTGAAAGGTCTAAATGGTGCTTTTAGACCAGGAGTCTTAACAGCCCTGATGGGTGTTAGTGGTGCAGGCAAGACCACTTTAATGGATGTCTTGGCCGGAAGGAAAACTGGTGGATACATTGAGGGAAGCATTGTGATATCTGGGTACCGTAAAAGGCAAGAAACATTTGCTCGCATATCAGGTTATTGCGAGCAAACTGATATCCACTCTCCTCATGTTACAGTCTATGAATCCCTGCTGTTTTCTGCTTGGCTTCGACTACTGCCTGAGGTTGATTCTGCAACGAGGAAGATGTTTATCGAGGAAGTTATGGAGCTTGTGGAGCTGACTTCACTTAGGGGAGCACTTGTGGGATTACCAGGTGTAACTGGCCTTTCAACCGAGCAGCGTAAAAGACTGACTATTGCCGTTGAGCTTGTTGCAAATCCATCTATAATTTTCATGGATGAGCCAACATCTGGCCTTGATGCCAGGGCAGCAGCAATAGTGATGAGAACAGTTAGGAACACAGTGGACACAGGCCGAACTGTGGTTTGCACTATCCACCAGCCTAGCATAGATATATTCGAAGCTTTTGATGAGCTTCTTCTTCTCAAATTGGGAGGTGAGCCAATATACGCTGGTCCATTAGGCCTCCATTCCTCCCTTCTGATCGAGTACTTTGAGGGAATTAATGGCGTTCCTAAAGTTAAAGATGGATATAACCCTGCAACGTGGATGTTGGAGATTACTTCAGCAGCACAAGAGGAAGCTCTTGGGGTTAACTTCACAGATGTGTACAAGAAATCAGAACTATACAAGAGAACTAAAGATATGATCAAGGAATTGTCTATACCTCCCTCAGGTTCTAAGGATCTGTACTTTCCTACTCGCTACTCGCAATCTTTTCACACCCAATGCATGGCTTGCCTATGGAAACAACACTGGTCGTACTGGCGAAACCCATCATATAGTGCAGTTAGACTCTTATTCACAACATTCATCGCGTTGTTGTTTGGTATGATATTTTGGGATCTCGGGTCAAAAAGGAGCAAGCAGCAAGACATCTTCAATGCAATGGGCTCTATATATTCTGCTGTTATTTTTCTCGGGGTCCAGAATGCTGCCTCAGTGCAGCCAATTGTGGCTGTTGAGAGAACAGTGTTTTACAGAGAAAGAGCAGCTGGTATGTACTCAGCTTTGCCTTACGCATTTGGACAGATGATGATTGAGGTTCCCTACATTTTCATTCAGACAATTATTTATGGGGTTATAGTATATGCAATGATGGGATTCGATTGGATAGTTTCCAAGTTCCTTTGGTACCTTTTCTTCATGTACTTCACCTTATTATACTTCACATTCTATGGCATGATGACCATGGCTCTAACTCCCAACCACAACATTGCTGCTATAACTTCATCTTCCTTCTATGCAATATGGAACCTTTTCTCAGGATTTGTCATTCCTCCATCGAGAATACCTATATGGTGGAAATGGTACTATTGGATTTGCCCTGTTGCTTGGACCTTGTATGGAATGGCCGCTTCGCAGTTTGGAGACATAAAGCAGAGACTCGAGACTGGCGAAACCGTGGAAGATTTTTTGACAAGCTACTTTGGATACAGGCACGACTTTCTGGGTATCGTTGCAGTGGTGGTTGTCGGGTTTTCATTGCTGTTCGGCTTTATCTTTGCTTATTCCATTCGAGCTTTTAACTTCCAAAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1421

Amino Acids

159.79

Weight (kDa)

7.09

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 66 - 118 4.7e-08 ABC-transporter N-terminal
ABC_tran PF00005 143 - 324 1.3e-16 ABC transporter
ABC2_membrane PF01061 479 - 691 1.1e-48 ABC-2 type transporter
PDR_assoc PF08370 696 - 758 3.3e-27 Plant PDR ABC transporter associated
ABC_tran PF00005 852 - 1004 3.9e-19 ABC transporter
ABC2_membrane PF01061 1149 - 1363 3e-58 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 2697, 3855
AccB1I GGYRCC 2 cut(s) 2697, 3855
AccB7I CCANNNNNTGG 2 cut(s) 3011, 3454
AccII CGCG 1 cut(s) 3539
AccIII TCCGGA 1 cut(s) 491
AciI CCGC 3 cut(s) 200, 2294, 4077
AclWI GGATC 9 cut(s) 703, 752, 765, 1744, 1808, 2243, 2256, 3414, 3573
AcoI YGGCCR 5 cut(s) 1126, 1336, 1659, 2646, 4074
AcsI RAATTY 3 cut(s) 587, 1175, 2069
AcuI CTGAAG 4 cut(s) 534, 1055, 2156, 3270
AcvI CACGTG 1 cut(s) 1151
AcyI GRCGYC 1 cut(s) 1874
AdeI CACNNNGTG 1 cut(s) 2531
AfiI CCNNNNNNNGG 7 cut(s) 130, 491, 1374, 3011, 3082, 3395, 3454
AflIII ACRYGT 3 cut(s) 708, 1819, 1845
AhdI GACNNNNNGTC 1 cut(s) 2585
AjnI CCWGG 8 cut(s) 1238, 1320, 1732, 2101, 2244, 2581, 2911, 3023
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AleI CACNNNNGTG 1 cut(s) 3326
Alw21I GWGCWC 5 cut(s) 334, 958, 1164, 1931, 2899
Alw26I GTCTC 8 cut(s) 653, 1336, 1689, 2032, 2145, 4086, 4099, 4106
AlwI GGATC 9 cut(s) 703, 752, 765, 1744, 1808, 2243, 2256, 3414, 3573
Ama87I CYCGRG 6 cut(s) 898, 1196, 1986, 3569, 3641, 4109
Aor13HI TCCGGA 1 cut(s) 491
ApoI RAATTY 3 cut(s) 587, 1175, 2069
ArsI GACNNNNNNTTYG 2 cut(s) 837, 869
AseI ATTAAT 1 cut(s) 3225
Asp700I GAANNNNTTC 2 cut(s) 2069, 3980
Asp718I GGTACC 2 cut(s) 2697, 3855
AspS9I GGNCC 8 cut(s) 121, 479, 944, 1145, 2131, 3176, 3646, 4059
AsuHPI GGTGA 8 cut(s) 41, 128, 202, 1243, 1361, 1795, 3170, 3868
AsuII TTCGAA 1 cut(s) 3120
AvaI CYCGRG 6 cut(s) 898, 1196, 1986, 3569, 3641, 4109
AvaII GGWCC 7 cut(s) 479, 944, 1145, 2131, 3176, 3646, 4059
AxyI CCTNAGG 3 cut(s) 2265, 2820, 3394
BaeGI GKGCMC 1 cut(s) 1267
BalI TGGCCA 3 cut(s) 1128, 1338, 1661
BamHI GGATCC 2 cut(s) 757, 2248
BanI GGYRCC 2 cut(s) 2697, 3855
BanII GRGCYC 3 cut(s) 334, 958, 3617
BarI GAAGNNNNNNTAC 2 cut(s) 3848, 3880
BbrPI CACGTG 1 cut(s) 1151
BbsI GAAGAC 3 cut(s) 39, 176, 532
Bbv12I GWGCWC 5 cut(s) 334, 958, 1164, 1931, 2899
BceAI ACGGC 2 cut(s) 2017, 2945
BciT130I CCWGG 8 cut(s) 1240, 1322, 1734, 2103, 2246, 2583, 2913, 3025
BciVI GTATCC 4 cut(s) 1734, 2192, 2660, 4148
BclI TGATCA 2 cut(s) 1785, 3369
BcoDI GTCTC 8 cut(s) 653, 1336, 1689, 2032, 2145, 4086, 4099, 4106
BfaI CTAG 7 cut(s) 129, 678, 726, 794, 1362, 1455, 3105
BfmI CTRYAG 2 cut(s) 1053, 2109
BfuI GTATCC 4 cut(s) 1734, 2192, 2660, 4148
BglII AGATCT 2 cut(s) 538, 545
BmcAI AGTACT 2 cut(s) 2274, 3212
Bme1390I CCNGG 8 cut(s) 1240, 1322, 1734, 2103, 2246, 2583, 2913, 3025
Bme18I GGWCC 7 cut(s) 479, 944, 1145, 2131, 3176, 3646, 4059
BmeRI GACNNNNNGTC 1 cut(s) 2585
BmeT110I CYCGRG 6 cut(s) 898, 1196, 1986, 3569, 3641, 4109
BmgT120I GGNCC 8 cut(s) 121, 479, 944, 1145, 2131, 3176, 3646, 4059
BmrFI CCNGG 8 cut(s) 1240, 1322, 1734, 2103, 2246, 2583, 2913, 3025
BmrI ACTGGG 1 cut(s) 2032
BmsI GCATC 6 cut(s) 301, 422, 903, 924, 1551, 3010
BmuI ACTGGG 1 cut(s) 2032
BpiI GAAGAC 3 cut(s) 39, 176, 532
BplI GAGNNNNNCTC 2 cut(s) 1686, 1718
BpmI CTGGAG 1 cut(s) 2337
Bpu14I TTCGAA 1 cut(s) 3120
BpuEI CTTGAG 5 cut(s) 182, 218, 818, 1730, 1820
BsaAI YACGTR 2 cut(s) 564, 1151
BsaBI GATNNNNATC 3 cut(s) 537, 1754, 2849
BsaHI GRCGYC 1 cut(s) 1874
BsaI GGTCTC 2 cut(s) 1689, 2032
BsaJI CCNNGG 6 cut(s) 151, 2074, 2118, 3024, 3912, 4125
BsaWI WCCGGW 3 cut(s) 491, 754, 1877
BsaXI ACNNNNNCTCC 6 cut(s) 1962, 1992, 2115, 2145, 2886, 2916
Bsc4I CCNNNNNNNGG 7 cut(s) 130, 491, 1374, 3011, 3082, 3395, 3454
Bse21I CCTNAGG 3 cut(s) 2265, 2820, 3394
Bse3DI GCAATG 5 cut(s) 2223, 3615, 3822, 3936, 4205
Bse8I GATNNNNATC 3 cut(s) 537, 1754, 2849
BseAI TCCGGA 1 cut(s) 491
BseBI CCWGG 8 cut(s) 1240, 1322, 1734, 2103, 2246, 2583, 2913, 3025
BseDI CCNNGG 6 cut(s) 151, 2074, 2118, 3024, 3912, 4125
BseJI GATNNNNATC 3 cut(s) 537, 1754, 2849
BseLI CCNNNNNNNGG 7 cut(s) 130, 491, 1374, 3011, 3082, 3395, 3454
BseMI GCAATG 5 cut(s) 2223, 3615, 3822, 3936, 4205
BseRI GAGGAG 2 cut(s) 1691, 2754
BseSI GKGCMC 1 cut(s) 1267
BsgI GTGCAG 3 cut(s) 2637, 3528, 3686
Bsh1236I CGCG 1 cut(s) 3539
BshNI GGYRCC 2 cut(s) 2697, 3855
BsiHKAI GWGCWC 5 cut(s) 334, 958, 1164, 1931, 2899
BsiHKCI CYCGRG 6 cut(s) 898, 1196, 1986, 3569, 3641, 4109
BsiSI CCGG 4 cut(s) 492, 755, 1878, 2649
BslFI GGGAC 4 cut(s) 465, 858, 1179, 1350
BslI CCNNNNNNNGG 7 cut(s) 130, 491, 1374, 3011, 3082, 3395, 3454
BsmAI GTCTC 8 cut(s) 653, 1336, 1689, 2032, 2145, 4086, 4099, 4106
BsmFI GGGAC 4 cut(s) 465, 858, 1179, 1350
BsmI GAATGC 2 cut(s) 1316, 3658
Bso31I GGTCTC 2 cut(s) 1689, 2032
BsoBI CYCGRG 6 cut(s) 898, 1196, 1986, 3569, 3641, 4109
Bsp119I TTCGAA 1 cut(s) 3120
Bsp1286I GDGCHC 7 cut(s) 334, 958, 1164, 1267, 1931, 2899, 3617
Bsp13I TCCGGA 1 cut(s) 491
Bsp1407I TGTACA 2 cut(s) 2396, 3330
Bsp19I CCATGG 1 cut(s) 3912
BspACI CCGC 3 cut(s) 200, 2294, 4077
BspEI TCCGGA 1 cut(s) 491
BspFNI CGCG 1 cut(s) 3539
BspHI TCATGA 1 cut(s) 1470
BspMAI CTGCAG 1 cut(s) 1057
BspPI GGATC 9 cut(s) 703, 752, 765, 1744, 1808, 2243, 2256, 3414, 3573
BspT104I TTCGAA 1 cut(s) 3120
BspT107I GGYRCC 2 cut(s) 2697, 3855
BspTNI GGTCTC 2 cut(s) 1689, 2032
BsrDI GCAATG 5 cut(s) 2223, 3615, 3822, 3936, 4205
BsrGI TGTACA 2 cut(s) 2396, 3330
BssECI CCNNGG 6 cut(s) 151, 2074, 2118, 3024, 3912, 4125
BssNI GRCGYC 1 cut(s) 1874
BssT1I CCWWGG 4 cut(s) 151, 2074, 2118, 3912
Bst2UI CCWGG 8 cut(s) 1240, 1322, 1734, 2103, 2246, 2583, 2913, 3025
Bst6I CTCTTC 4 cut(s) 724, 965, 1469, 1709
BstACI GRCGYC 1 cut(s) 1874
BstAPI GCANNNNNTGC 1 cut(s) 3459
BstAUI TGTACA 2 cut(s) 2396, 3330
BstBAI YACGTR 2 cut(s) 564, 1151
BstBI TTCGAA 1 cut(s) 3120
BstC8I GCNNGC 8 cut(s) 1077, 1359, 1927, 2620, 2725, 2744, 3460, 3587
BstDSI CCRYGG 2 cut(s) 3912, 4125
BstENI CCTNNNNNAGG 2 cut(s) 1372, 3393
BstFNI CGCG 1 cut(s) 3539
BstMAI GTCTC 8 cut(s) 653, 1336, 1689, 2032, 2145, 4086, 4099, 4106
BstMWI GCNNNNNNNGC 6 cut(s) 674, 1322, 1403, 2875, 3029, 3459
BstNI CCWGG 8 cut(s) 1240, 1322, 1734, 2103, 2246, 2583, 2913, 3025
BstNSI RCATGY 3 cut(s) 712, 1823, 1849
BstSCI CCNGG 8 cut(s) 1238, 1320, 1732, 2101, 2244, 2581, 2911, 3023
BstSFI CTRYAG 2 cut(s) 1053, 2109
BstSLI GKGCMC 1 cut(s) 1267
BstSNI TACGTA 1 cut(s) 564
BstUI CGCG 1 cut(s) 3539
BstV2I GAAGAC 3 cut(s) 39, 176, 532
BstX2I RGATCY 7 cut(s) 538, 545, 757, 1749, 2248, 3406, 3565
BstXI CCANNNNNNTGG 4 cut(s) 868, 1346, 2007, 2635
BstYI RGATCY 7 cut(s) 538, 545, 757, 1749, 2248, 3406, 3565
Bsu36I CCTNAGG 3 cut(s) 2265, 2820, 3394
BsuI GTATCC 4 cut(s) 1734, 2192, 2660, 4148
BtgI CCRYGG 2 cut(s) 3912, 4125
BtgZI GCGATG 2 cut(s) 1643, 3520
BtsI GCAGTG 1 cut(s) 4191
BtsIMutI CAGTG 9 cut(s) 657, 662, 1299, 1572, 3069, 3475, 3669, 3699, 4191
Cac8I GCNNGC 8 cut(s) 1077, 1359, 1927, 2620, 2725, 2744, 3460, 3587
CciI TCATGA 1 cut(s) 1470
Cfr13I GGNCC 8 cut(s) 121, 479, 944, 1145, 2131, 3176, 3646, 4059
CseI GACGC 2 cut(s) 1322, 1863
CsiI ACCWGGT 2 cut(s) 2101, 2911
DraIII CACNNNGTG 1 cut(s) 2531
DriI GACNNNNNGTC 1 cut(s) 2585
EaeI YGGCCR 5 cut(s) 1126, 1336, 1659, 2646, 4074
Eam1104I CTCTTC 4 cut(s) 724, 965, 1469, 1709
Eam1105I GACNNNNNGTC 1 cut(s) 2585
EarI CTCTTC 4 cut(s) 724, 965, 1469, 1709
Ecl136II GAGCTC 2 cut(s) 332, 956
Eco105I TACGTA 1 cut(s) 564
Eco130I CCWWGG 4 cut(s) 151, 2074, 2118, 3912
Eco147I AGGCCT 1 cut(s) 3186
Eco24I GRGCYC 3 cut(s) 334, 958, 3617
Eco31I GGTCTC 2 cut(s) 1689, 2032
Eco32I GATATC 4 cut(s) 772, 975, 2691, 2755
Eco47I GGWCC 7 cut(s) 479, 944, 1145, 2131, 3176, 3646, 4059
Eco53kI GAGCTC 2 cut(s) 332, 956
Eco57I CTGAAG 4 cut(s) 534, 1055, 2156, 3270
Eco72I CACGTG 1 cut(s) 1151
Eco81I CCTNAGG 3 cut(s) 2265, 2820, 3394
Eco88I CYCGRG 6 cut(s) 898, 1196, 1986, 3569, 3641, 4109
EcoICRI GAGCTC 2 cut(s) 332, 956
EcoNI CCTNNNNNAGG 2 cut(s) 1372, 3393
EcoO109I RGGNCCY 1 cut(s) 479
EcoRI GAATTC 2 cut(s) 1175, 2069
EcoRII CCWGG 8 cut(s) 1238, 1320, 1732, 2101, 2244, 2581, 2911, 3023
EcoRV GATATC 4 cut(s) 772, 975, 2691, 2755
EcoT14I CCWWGG 4 cut(s) 151, 2074, 2118, 3912
EcoT22I ATGCAT 2 cut(s) 1566, 3455
EcoT38I GRGCYC 3 cut(s) 334, 958, 3617
ErhI CCWWGG 4 cut(s) 151, 2074, 2118, 3912
FalI AAGNNNNNCTT 2 cut(s) 451, 483
FaqI GGGAC 4 cut(s) 465, 858, 1179, 1350
FbaI TGATCA 2 cut(s) 1785, 3369
FriOI GRGCYC 3 cut(s) 334, 958, 3617
FspBI CTAG 7 cut(s) 129, 678, 726, 794, 1362, 1455, 3105
GsuI CTGGAG 1 cut(s) 2337
HapII CCGG 4 cut(s) 492, 755, 1878, 2649
HgaI GACGC 2 cut(s) 1322, 1863
Hin1I GRCGYC 1 cut(s) 1874
HincII GTYRAC 2 cut(s) 1423, 3316
HindII GTYRAC 2 cut(s) 1423, 3316
HindIII AAGCTT 2 cut(s) 2383, 3123
HinfI GANTC 9 cut(s) 918, 1590, 2114, 2586, 2783, 2828, 3516, 3825, 4107
HpaI GTTAAC 2 cut(s) 1423, 3316
HpaII CCGG 4 cut(s) 492, 755, 1878, 2649
HphI GGTGA 8 cut(s) 41, 128, 202, 1243, 1361, 1795, 3170, 3868
Hpy166II GTNNAC 9 cut(s) 158, 193, 1015, 1148, 1271, 1423, 3067, 3316, 3331
Hpy188I TCNGA 9 cut(s) 600, 1123, 1442, 1648, 2359, 2492, 3204, 3343, 3786
Hpy8I GTNNAC 9 cut(s) 158, 193, 1015, 1148, 1271, 1423, 3067, 3316, 3331
HpyCH4IV ACGT 4 cut(s) 563, 1150, 1267, 3266
HpyF10VI GCNNNNNNNGC 6 cut(s) 674, 1322, 1403, 2875, 3029, 3459
HpySE526I ACGT 4 cut(s) 563, 1150, 1267, 3266
Hsp92I GRCGYC 1 cut(s) 1874
Kpn2I TCCGGA 1 cut(s) 491
KpnI GGTACC 2 cut(s) 2701, 3859
Ksp22I TGATCA 2 cut(s) 1785, 3369
KspAI GTTAAC 2 cut(s) 1423, 3316
LmnI GCTCC 5 cut(s) 2088, 2866, 2875, 2894, 3582
LweI GCATC 6 cut(s) 301, 422, 903, 924, 1551, 3010
MabI ACCWGGT 2 cut(s) 2101, 2911
MaeI CTAG 7 cut(s) 129, 678, 726, 794, 1362, 1455, 3105
MaeII ACGT 4 cut(s) 563, 1150, 1267, 3266
MfeI CAATTG 3 cut(s) 63, 273, 3672
MflI RGATCY 7 cut(s) 538, 545, 757, 1749, 2248, 3406, 3565
MhlI GDGCHC 7 cut(s) 334, 958, 1164, 1267, 1931, 2899, 3617
MlsI TGGCCA 3 cut(s) 1128, 1338, 1661
MluNI TGGCCA 3 cut(s) 1128, 1338, 1661
MlyI GAGTC 4 cut(s) 927, 2595, 3510, 4101
MmeI TCCRAC 8 cut(s) 159, 235, 673, 922, 1560, 2066, 2176, 3255
Mox20I TGGCCA 3 cut(s) 1128, 1338, 1661
Mph1103I ATGCAT 2 cut(s) 1566, 3455
MroI TCCGGA 1 cut(s) 491
MroXI GAANNNNTTC 2 cut(s) 2069, 3980
MscI TGGCCA 3 cut(s) 1128, 1338, 1661
MslI CAYNNNNRTG 6 cut(s) 362, 1781, 2060, 2504, 2633, 3326
Msp20I TGGCCA 3 cut(s) 1128, 1338, 1661
MspA1I CMGCKG 1 cut(s) 3716
MspI CCGG 4 cut(s) 492, 755, 1878, 2649
MspR9I CCNGG 8 cut(s) 1240, 1322, 1734, 2103, 2246, 2583, 2913, 3025
MunI CAATTG 3 cut(s) 63, 273, 3672
Mva1269I GAATGC 2 cut(s) 1316, 3658
MvaI CCWGG 8 cut(s) 1240, 1322, 1734, 2103, 2246, 2583, 2913, 3025
MvnI CGCG 1 cut(s) 3539
MwoI GCNNNNNNNGC 6 cut(s) 674, 1322, 1403, 2875, 3029, 3459
NcoI CCATGG 1 cut(s) 3912
NmuCI GTSAC 3 cut(s) 919, 1231, 1297
NsiI ATGCAT 2 cut(s) 1566, 3455
NspI RCATGY 3 cut(s) 712, 1823, 1849
NspV TTCGAA 1 cut(s) 3120
OliI CACNNNNGTG 1 cut(s) 3326
PaeR7I CTCGAG 2 cut(s) 1986, 4109
PagI TCATGA 1 cut(s) 1470
PceI AGGCCT 1 cut(s) 3186
PciI ACATGT 3 cut(s) 708, 1819, 1845
PcsI WCGNNNNNNNCGW 1 cut(s) 4116
PctI GAATGC 2 cut(s) 1316, 3658
PdmI GAANNNNTTC 2 cut(s) 2069, 3980
PfeI GAWTC 5 cut(s) 1590, 2114, 2783, 2828, 3825
PflMI CCANNNNNTGG 2 cut(s) 3011, 3454
PfoI TCCNGGA 1 cut(s) 1238
PleI GAGTC 4 cut(s) 926, 2594, 3510, 4101
PmaCI CACGTG 1 cut(s) 1151
PmlI CACGTG 1 cut(s) 1151
PpsI GAGTC 4 cut(s) 926, 2594, 3510, 4101
Ppu21I YACGTR 2 cut(s) 564, 1151
PpuMI RGGWCCY 1 cut(s) 479
PscI ACATGT 3 cut(s) 708, 1819, 1845
PshBI ATTAAT 1 cut(s) 3225
Psp124BI GAGCTC 2 cut(s) 334, 958
Psp5II RGGWCCY 1 cut(s) 479
Psp6I CCWGG 8 cut(s) 1238, 1320, 1732, 2101, 2244, 2581, 2911, 3023
PspCI CACGTG 1 cut(s) 1151
PspGI CCWGG 8 cut(s) 1238, 1320, 1732, 2101, 2244, 2581, 2911, 3023
PspPI GGNCC 8 cut(s) 121, 479, 944, 1145, 2131, 3176, 3646, 4059
PspPPI RGGWCCY 1 cut(s) 479
PstI CTGCAG 1 cut(s) 1057
PsuI RGATCY 7 cut(s) 538, 545, 757, 1749, 2248, 3406, 3565
PvuII CAGCTG 1 cut(s) 3716
RseI CAYNNNNRTG 6 cut(s) 362, 1781, 2060, 2504, 2633, 3326
SacI GAGCTC 2 cut(s) 334, 958
Sau96I GGNCC 8 cut(s) 121, 479, 944, 1145, 2131, 3176, 3646, 4059
ScaI AGTACT 2 cut(s) 2274, 3212
SchI GAGTC 4 cut(s) 927, 2595, 3510, 4101
ScrFI CCNGG 8 cut(s) 1240, 1322, 1734, 2103, 2246, 2583, 2913, 3025
SduI GDGCHC 7 cut(s) 334, 958, 1164, 1267, 1931, 2899, 3617
SexAI ACCWGGT 2 cut(s) 2101, 2911
SfaNI GCATC 6 cut(s) 301, 422, 903, 924, 1551, 3010
SfcI CTRYAG 2 cut(s) 1053, 2109
Sfr274I CTCGAG 2 cut(s) 1986, 4109
SfuI TTCGAA 1 cut(s) 3120
SinI GGWCC 7 cut(s) 479, 944, 1145, 2131, 3176, 3646, 4059
SlaI CTCGAG 2 cut(s) 1986, 4109
SmiMI CAYNNNNRTG 6 cut(s) 362, 1781, 2060, 2504, 2633, 3326
SmlI CTYRAG 7 cut(s) 161, 233, 833, 1745, 1835, 1986, 4109
SmoI CTYRAG 7 cut(s) 161, 233, 833, 1745, 1835, 1986, 4109
SnaBI TACGTA 1 cut(s) 564
SseBI AGGCCT 1 cut(s) 3186
SsiI CCGC 3 cut(s) 200, 2294, 4077
SspI AATATT 1 cut(s) 1545
SspMI CTAG 7 cut(s) 129, 678, 726, 794, 1362, 1455, 3105
SstI GAGCTC 2 cut(s) 334, 958
StuI AGGCCT 1 cut(s) 3186
StyD4I CCNGG 8 cut(s) 1238, 1320, 1732, 2101, 2244, 2581, 2911, 3023
StyI CCWWGG 4 cut(s) 151, 2074, 2118, 3912
TaiI ACGT 4 cut(s) 566, 1153, 1270, 3269
TatI WGTACW 8 cut(s) 1842, 2272, 2396, 3210, 3330, 3411, 3723, 3870
TauI GCSGC 1 cut(s) 4079
TfiI GAWTC 5 cut(s) 1590, 2114, 2783, 2828, 3825
TscAI CASTG 9 cut(s) 657, 669, 1306, 1579, 3069, 3482, 3669, 3699, 4191
TseFI GTSAC 3 cut(s) 919, 1231, 1297
Tsp45I GTSAC 3 cut(s) 919, 1231, 1297
TspGWI ACGGA 1 cut(s) 2325
TspRI CASTG 9 cut(s) 657, 669, 1306, 1579, 3069, 3482, 3669, 3699, 4191
Van91I CCANNNNNTGG 2 cut(s) 3011, 3454
VpaK11BI GGWCC 7 cut(s) 479, 944, 1145, 2131, 3176, 3646, 4059
VspI ATTAAT 1 cut(s) 3225
XagI CCTNNNNNAGG 2 cut(s) 1372, 3393
XapI RAATTY 3 cut(s) 587, 1175, 2069
XbaI TCTAGA 2 cut(s) 725, 1454
XceI RCATGY 3 cut(s) 712, 1823, 1849
XcmI CCANNNNNNNNNTGG 4 cut(s) 508, 868, 2099, 2163
XhoI CTCGAG 2 cut(s) 1986, 4109
XmnI GAANNNNTTC 2 cut(s) 2069, 3980
XspI CTAG 7 cut(s) 129, 678, 726, 794, 1362, 1455, 3105
ZrmI AGTACT 2 cut(s) 2274, 3212
Zsp2I ATGCAT 2 cut(s) 1566, 3455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.