Rh2CG496400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000493
Physical Location & Seq
Forward (+)
66699325 .. 66729771
30447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG496400.1

Sequence Viewer

Length: 204 bp
ATGCTCAACGTGGCACTCTTGCAGCAATTATGCTCAGTGCACAGCAGCCACGTATTACTTTGGAGTCTTGGGGAAAGCGGAGGCCGGAACTCAGGAAGACGAGCAGTCGGAGTAGACAGGAGGAAGGAGGGCGAGGAATTTGTGTATCTTCTTAAATCTGCAACTAATTTAGAATATATGAGAGTTGATGCTTATTTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.55

Weight (kDa)

7.95

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 114
AciI CCGC 1 cut(s) 78
AcsI RAATTY 1 cut(s) 137
AhdI GACNNNNNGTC 1 cut(s) 104
Alw21I GWGCWC 1 cut(s) 42
Alw44I GTGCAC 1 cut(s) 38
AoxI GGCC 1 cut(s) 82
ApaLI GTGCAC 1 cut(s) 38
ApeKI GCWGC 2 cut(s) 22, 45
ApoI RAATTY 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 34, 57
BisI GCNGC 2 cut(s) 23, 46
BlsI GCNGC 2 cut(s) 24, 47
BmeRI GACNNNNNGTC 1 cut(s) 104
BmsI GCATC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 52
BseMII CTCAG 2 cut(s) 48, 105
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 2 cut(s) 34, 57
BshFI GGCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 85
BsnI GGCC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 42
BspACI CCGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 2 cut(s) 47, 104
BstBAI YACGTR 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 34, 91
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 34, 57
BstV2I GAAGAC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 42
CviJI RGCY 2 cut(s) 48, 84
CviKI_1 RGCY 2 cut(s) 48, 84
DdeI CTNAG 2 cut(s) 34, 91
DriI GACNNNNNGTC 1 cut(s) 104
Eam1105I GACNNNNNGTC 1 cut(s) 104
FaiI YATR 3 cut(s) 31, 177, 179
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 23, 46
Fsp4HI GCNGC 2 cut(s) 23, 46
GluI GCNGC 2 cut(s) 23, 46
HaeIII GGCC 1 cut(s) 84
HapII CCGG 1 cut(s) 85
HinfI GANTC 1 cut(s) 64
HpaII CCGG 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 40, 115
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 2 cut(s) 93, 201
Hpy8I GTNNAC 2 cut(s) 40, 115
HpyAV CCTTC 1 cut(s) 118
HpyCH4IV ACGT 2 cut(s) 9, 51
HpyCH4V TGCA 3 cut(s) 22, 40, 161
HpyF3I CTNAG 2 cut(s) 34, 91
HpySE526I ACGT 2 cut(s) 9, 51
LpnPI CCDG 3 cut(s) 78, 98, 103
Lsp1109I GCAGC 2 cut(s) 34, 57
LweI GCATC 1 cut(s) 178
MaeII ACGT 2 cut(s) 9, 51
MboII GAAGA 2 cut(s) 108, 140
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 3 cut(s) 26, 137, 166
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 4 cut(s) 74, 114, 121, 127
MseI TTAA 1 cut(s) 153
MspI CCGG 1 cut(s) 85
PkrI GCNGC 2 cut(s) 24, 47
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
Ppu21I YACGTR 1 cut(s) 52
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 23, 46
SchI GAGTC 1 cut(s) 73
SduI GDGCHC 1 cut(s) 42
SetI ASST 2 cut(s) 12, 54
SfaNI GCATC 1 cut(s) 178
SgeI CNNG 9 cut(s) 22, 31, 62, 80, 97, 105, 113, 130, 145
Sse9I AATT 3 cut(s) 26, 137, 166
SsiI CCGC 1 cut(s) 78
TaiI ACGT 2 cut(s) 12, 54
TasI AATT 3 cut(s) 26, 137, 166
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 42
TseI GCWGC 2 cut(s) 22, 45
TspRI CASTG 1 cut(s) 42
VneI GTGCAC 1 cut(s) 38
XapI RAATTY 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.