Rh6CG409200
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000493
Physical Location & Seq
Forward (+)
59479989 .. 59487141
7153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG409200.1

Sequence Viewer

Length: 3930 bp
ATGTTAGTGGCATTATCAAGCCCCAAAGGTAAGTTTTTATATGAAATTGGTATCATCATTCATCATCCATTCTATATTTTACCAAACAGTTCTTATTTCACTTCTGAATGCAATTCTTGCAGAATGACTTTGCTTTTAGGTCCCCCAAGTTCCGGAAAAACCACATTACTATTGGCTCTTGCAGGAAGACTTGATAAAGATCTAAGATCTTCGGGAGAAGTTACGTATAATGGACACGGTATGGCAGAATTTGTAGCTCAGAGAACATCAGCTTATATAAGTCAAAATGATCTTCACATAGGAGAAATGACAGTGAAGGAGACACTGGCTTTCTCAGCTAGATGTCAAGGAGTTGGATCAAATTGCGACATGTTGGCAGAATTGTCTAGAAGAGAGAAGGAGGAAAATATCAAACCTGATCCCGACATTGATATCTACCAAAAGGCAGCAGCACTAGAAGGGCAGGAGAGTAGTGTAGTTGCTGATTACATTCTCAAGATTTTGGGACTTGAAGTTTGTGCCAATACTATGGTGGGGGATGAAATGGTAAGAGGCATCTCGGGTGGAGAAAGAAAGCGAGTCACAATAGGGGAGATGCTTGTTGGACCTGTAAGAGCTCTCTTCATGGATGAGATATCAACTGGCTTGGACAGTTCAACGACTTTCCAGATAGTAAACTCACTCAGGCAATCCATCCATATTCTTAGGGGAACTGCAGTTGTTTCCCTCCTACAGCCAGCCCCCGAAACTTATAGCCTATTCGATGATATAATTCTCCTATCAGATGGCCAAATAGTGTATCAGGGTCCACGTGAAAGTGTGCTCGACTTTTTTGAATTCATGGGGTTCAAATGTCCCGAGAGGAAAGGAGTTGCTGACTTCTTGCAAGAGGTGACATCCAGGAAAGATCAAGAGCAGTATTGGGCACGTTTACATGAGCCTTACAGATTTGTTACTGTCACTGAGTTTGCTGACGCATTCCAGGCATTTCATATTGGCCAGAGACTTGGTGATGAGCTTGCTAGTCCCTTCGACAGGTCTAAAAGCCACCGTGCTGCTTTAACAGCTAAGAAATATGGTGTTAACACGAAGGAGTTGTTCAGAGCTTGTATTTCTAGAGAGTTTTTGCTCATGAAGAGGAACTCATTTGCCTACATTTTCAAACTGGCTCTACTTATCATCTTAGCTTCTATAACAACAACAATATTTCTAAGAGTTGAGATGCAAAAAGGCACTGTGTTGGATGGGGGAATCTATCTGGGTGCTTTGTTCTTTGCAGTCATTGTAGCGATGTTTAATGGAATATCAGAGCTGAACATGGCCATTATGAAACTTCCCGTCTTTTACAAGCAAAGAGACCTCCTCTTCTATCCTGCATGGGCATACTCAATACCTGGATGGATACTCAAGATCCCAATCACTTTAGTAGAGAGTTTCATTTGGGTGATCATTACTTATTATGTCATAGGATTTGATCCACATGTTGAAAGGTTCCTCAAGCAGTACATGTTACTGGTGTGCATAAACCAGATGGCGTCCGGTTTGTTCAGGTGCATGGCAGCAATAGGAAGGAGTGTAATAGTTGCGAGCACATTTGGAACCTTTGCATTACTTGTAATCTTGGTTTTGGGTGGATTTGTCTTATCTCGAGAGGCTGTACCAAAATGGTGGTTGTGGGGGTACTGGGTCTCGCCGTTGATGTATGGACAAAATGCCATAGCTGTGAATGAATTCCTTGGAAAGAGTTGGAGCCATGTTCCACCTGGTTCTACAGAATCCTTGGGAGTTATGGTCCTGAAGTCTCATGGCATTTTCCCAGAAGCACATTGGTATTGGATTGGAGTAGCAGCTTTAGTTGGATACACTTTTCTGTTCAACATCATCATTGCTTTCGCTCTACAATACCTGGATCCATTTGGGAAGCCTCAGGCAGTACTGTCCAAAGAAAGCATAGCGGAGAGAAATGGTAACGGAACTGGAGAGTTCATTGAGCTATTATCAAGAGGAAATAGATATTCTGAAAGTAGTATTGAAGGTGCAACAAGCTTGTCATCATGTACAGGTGGAGGAAGAAGTGATATTGCTAATGGGAAAAGGAAGCGAGGAATGGTTCTTCCTTTTCAACCCCTTTCCCTTGCTTTCGATGAGATCAGATATGCCATAGACATGCCACAGGAAATGAAAGCACAGGGTGTTAAGGAGGATAGGCTGGAACTGTTGAAAGGTCTAAATGGTGCTTTTAGACCAGGAGTCTTAACAGCCCTGATGGGTGTTAGTGGTGCAGGCAAGACCACTTTAATGGATGTCTTGGCCGGAAGGAAAACTGGTGGATACATTGAGGGAAGCATTGTGATATCTGGGTACCGTAAAAGGCAAGAAACATTTGCTCGCATATCAGGTTATTGCGAGCAAACTGATATCCACTCTCCTCATGTTACAGTCTATGAATCCCTGCTGTTTTCTGCTTGGCTTCGACTACTGCCTGAGGTTGATTCTGCAACTAGGAAGATGTTTATCGAGGAAGTTATGGAGCTTGTGGAGCTGACTTCACTTAGGGGAGCACTTGTGGGATTACCAGGTGTAACTGGCCTTTCAACCGAGCAGCGTAAAAGACTGACTATTGCCGTTGAGCTTGTTGCAAATCCATCTATAATTTTCATGGATGAGCCAACATCTGGCCTTGATGCCAGGGCAGCAGCAATAGTGATGAGAACAGTTAGGAACACAGTGGACACAGGCCGAACTGTGGTTTGCACTATCCACCAGCCTAGCATAGATATATTCGAAGCTTTTGATGAGCTTCTTCTTCTCAAATTGGGAGGTGAGCCAATATACGCTGGTCCATTAGGCCTCCATTCCTCCCTTCTGATCGAGTACTTTGAGGGAATTAATGGTGTTCCTAAAGTTAAAGATGGATATAACCCTGCAACCTGGATGTTGGAGATTACTTCAGCAGCACAAGAGGAAGCTCTTGGGGTTAACTTCACAGATGTGTACAAGAAATCAGAACTATACAAGAGAACTAAAGATATGATCAAGGAATTGTCTATACCTCCCTCAGGTTCTAAGGATCTGTACTTTCCTACTCGCTACTCGCAATCTTTTCACACCCAATGCATGGCTTGCCTATGGAAACAACACTGGTCGTACTGGCGAAACCCATCATATAGTGCAGTTAGACTCTTATTCACAACATTCATCGCGTTGTTGTTTGGTATGATATTTTGGGATCTCGGGTCAAAAAGGAGCAAGCAGCAAGACATCTTCAATGCAATGGGCTCTATATATTCTGCTGTTATTTTTCTCGGGGTCCAGAATGCTGCCTCAGTGCAGCCAATTGTGGCTGTTGAGAGAACAGTGTTTTACAGAGAAAGAGCAGCTGGTATGTACTCAGCTTTGCCTTACGCATTTGGACAGATGATGATTGAGGTTCCCTACATTTTCATTCAGACAATTATTTATGGGGTTATAGTATATGCAATGATGGGATTCGATTGGATAGTTTCCAAGTTCCTTTGGTACCTTTTCTTCATGTACTTCACCTTATTATACTTCACATTCTATGGCATGATGACCATGGCTCTAACTCCCAACCACAACATTGCTGCTATAACTTCATCTTCCTTCTATGCAATATGGAACCTTTTCTCAGGATTTGTCATTCCTCCATCGAGAATACCTATATGGTGGAAATGGTACTATTGGATTTGCCCTGTTGCTTGGACCTTGTATGGAATGGCCGCTTCGCAGTTTGGAGACATAAAGCAGAGACTCGAGACTGGCGAAACTGTGGAAGATTTTTTGACAAGCTACTTTGGATACAGGCACGACTTTCTGGGTATCGTTGCAGTGGTGGTTGTCGGGTTTTCATTGCTGTTCGGCTTTATCTTTGCTTATTCCATTCGAGCTTTTAACTTCCAAAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1309

Amino Acids

146.88

Weight (kDa)

7.26

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 37 - 211 3.3e-14 ABC transporter
ABC2_membrane PF01061 366 - 578 8.6e-49 ABC-2 type transporter
PDR_assoc PF08370 583 - 645 3e-27 Plant PDR ABC transporter associated
ABC_tran PF00005 740 - 892 3.5e-19 ABC transporter
ABC2_membrane PF01061 1037 - 1251 2.6e-58 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 2361, 3519
AccB1I GGYRCC 2 cut(s) 2361, 3519
AccB7I CCANNNNNTGG 2 cut(s) 2675, 3118
AccII CGCG 1 cut(s) 3203
AccIII TCCGGA 1 cut(s) 152
AciI CCGC 2 cut(s) 1955, 3741
AclWI GGATC 8 cut(s) 364, 413, 1405, 1469, 1904, 1917, 3078, 3237
AcoI YGGCCR 5 cut(s) 787, 997, 1320, 2310, 3738
AcsI RAATTY 3 cut(s) 248, 836, 1730
AcuI CTGAAG 2 cut(s) 1817, 2934
AcvI CACGTG 1 cut(s) 812
AcyI GRCGYC 1 cut(s) 1535
AdeI CACNNNGTG 1 cut(s) 2192
AfiI CCNNNNNNNGG 6 cut(s) 152, 1035, 2675, 2746, 3059, 3118
AflIII ACRYGT 3 cut(s) 369, 1480, 1506
AhdI GACNNNNNGTC 1 cut(s) 2249
AjnI CCWGG 9 cut(s) 899, 981, 1393, 1762, 1905, 2245, 2575, 2687, 2930
AleI CACNNNNGTG 1 cut(s) 2990
Alw21I GWGCWC 4 cut(s) 619, 825, 1592, 2563
Alw26I GTCTC 8 cut(s) 314, 997, 1350, 1693, 1806, 3750, 3763, 3770
AlwI GGATC 8 cut(s) 364, 413, 1405, 1469, 1904, 1917, 3078, 3237
Ama87I CYCGRG 6 cut(s) 559, 857, 1647, 3233, 3305, 3773
Aor13HI TCCGGA 1 cut(s) 152
AoxI GGCC 9 cut(s) 787, 997, 1320, 2310, 2587, 2677, 2737, 2848, 3738
ApoI RAATTY 3 cut(s) 248, 836, 1730
ArsI GACNNNNNNTTYG 2 cut(s) 498, 530
AseI ATTAAT 1 cut(s) 2889
Asp700I GAANNNNTTC 2 cut(s) 1730, 3644
Asp718I GGTACC 2 cut(s) 2361, 3519
AspS9I GGNCC 7 cut(s) 140, 605, 806, 1792, 2840, 3310, 3723
AsuHPI GGTGA 5 cut(s) 904, 1022, 1456, 2834, 3532
AsuII TTCGAA 1 cut(s) 2784
AvaI CYCGRG 6 cut(s) 559, 857, 1647, 3233, 3305, 3773
AvaII GGWCC 7 cut(s) 140, 605, 806, 1792, 2840, 3310, 3723
AxyI CCTNAGG 3 cut(s) 1926, 2484, 3058
BaeGI GKGCMC 1 cut(s) 928
BalI TGGCCA 3 cut(s) 789, 999, 1322
BamHI GGATCC 1 cut(s) 1909
BanI GGYRCC 2 cut(s) 2361, 3519
BanII GRGCYC 2 cut(s) 619, 3281
BarI GAAGNNNNNNTAC 2 cut(s) 3512, 3544
BbrPI CACGTG 1 cut(s) 812
BbsI GAAGAC 1 cut(s) 193
Bbv12I GWGCWC 4 cut(s) 619, 825, 1592, 2563
BceAI ACGGC 2 cut(s) 1678, 2609
BciT130I CCWGG 9 cut(s) 901, 983, 1395, 1764, 1907, 2247, 2577, 2689, 2932
BciVI GTATCC 4 cut(s) 1395, 1853, 2324, 3812
BclI TGATCA 2 cut(s) 1446, 3033
BcoDI GTCTC 8 cut(s) 314, 997, 1350, 1693, 1806, 3750, 3763, 3770
BfaI CTAG 7 cut(s) 339, 387, 455, 1023, 1116, 2502, 2769
BfmI CTRYAG 3 cut(s) 714, 731, 1770
BfuI GTATCC 4 cut(s) 1395, 1853, 2324, 3812
BglII AGATCT 2 cut(s) 199, 206
BmcAI AGTACT 2 cut(s) 1935, 2876
Bme1390I CCNGG 9 cut(s) 901, 983, 1395, 1764, 1907, 2247, 2577, 2689, 2932
Bme18I GGWCC 7 cut(s) 140, 605, 806, 1792, 2840, 3310, 3723
BmeRI GACNNNNNGTC 1 cut(s) 2249
BmeT110I CYCGRG 6 cut(s) 559, 857, 1647, 3233, 3305, 3773
BmgT120I GGNCC 7 cut(s) 140, 605, 806, 1792, 2840, 3310, 3723
BmrFI CCNGG 9 cut(s) 901, 983, 1395, 1764, 1907, 2247, 2577, 2689, 2932
BmrI ACTGGG 1 cut(s) 1693
BmsI GCATC 4 cut(s) 564, 585, 1212, 2674
BmuI ACTGGG 1 cut(s) 1693
BpiI GAAGAC 1 cut(s) 193
BplI GAGNNNNNCTC 2 cut(s) 1347, 1379
BpmI CTGGAG 1 cut(s) 1998
Bpu14I TTCGAA 1 cut(s) 2784
BpuEI CTTGAG 3 cut(s) 479, 1391, 1481
BsaAI YACGTR 2 cut(s) 225, 812
BsaBI GATNNNNATC 3 cut(s) 198, 1415, 2513
BsaHI GRCGYC 1 cut(s) 1535
BsaI GGTCTC 2 cut(s) 1350, 1693
BsaJI CCNNGG 4 cut(s) 1735, 1779, 2688, 3576
BsaWI WCCGGW 2 cut(s) 152, 1538
BsaXI ACNNNNNCTCC 4 cut(s) 1776, 1806, 2550, 2580
Bsc4I CCNNNNNNNGG 6 cut(s) 152, 1035, 2675, 2746, 3059, 3118
Bse21I CCTNAGG 3 cut(s) 1926, 2484, 3058
Bse3DI GCAATG 5 cut(s) 1884, 3279, 3486, 3600, 3869
Bse8I GATNNNNATC 3 cut(s) 198, 1415, 2513
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 9 cut(s) 901, 983, 1395, 1764, 1907, 2247, 2577, 2689, 2932
BseDI CCNNGG 4 cut(s) 1735, 1779, 2688, 3576
BseJI GATNNNNATC 3 cut(s) 198, 1415, 2513
BseLI CCNNNNNNNGG 6 cut(s) 152, 1035, 2675, 2746, 3059, 3118
BseMI GCAATG 5 cut(s) 1884, 3279, 3486, 3600, 3869
BseRI GAGGAG 2 cut(s) 1352, 2418
BseSI GKGCMC 1 cut(s) 928
BsgI GTGCAG 3 cut(s) 2301, 3192, 3350
Bsh1236I CGCG 1 cut(s) 3203
BshFI GGCC 9 cut(s) 789, 999, 1322, 2312, 2589, 2679, 2739, 2850, 3740
BshNI GGYRCC 2 cut(s) 2361, 3519
BsiHKAI GWGCWC 4 cut(s) 619, 825, 1592, 2563
BsiHKCI CYCGRG 6 cut(s) 559, 857, 1647, 3233, 3305, 3773
BsiSI CCGG 3 cut(s) 153, 1539, 2313
BslFI GGGAC 4 cut(s) 126, 519, 840, 1011
BslI CCNNNNNNNGG 6 cut(s) 152, 1035, 2675, 2746, 3059, 3118
BsmAI GTCTC 8 cut(s) 314, 997, 1350, 1693, 1806, 3750, 3763, 3770
BsmFI GGGAC 4 cut(s) 126, 519, 840, 1011
BsmI GAATGC 3 cut(s) 113, 977, 3322
BsnI GGCC 9 cut(s) 789, 999, 1322, 2312, 2589, 2679, 2739, 2850, 3740
Bso31I GGTCTC 2 cut(s) 1350, 1693
BsoBI CYCGRG 6 cut(s) 559, 857, 1647, 3233, 3305, 3773
Bsp119I TTCGAA 1 cut(s) 2784
Bsp1286I GDGCHC 6 cut(s) 619, 825, 928, 1592, 2563, 3281
Bsp13I TCCGGA 1 cut(s) 152
Bsp1407I TGTACA 2 cut(s) 2057, 2994
Bsp19I CCATGG 1 cut(s) 3576
BspACI CCGC 2 cut(s) 1955, 3741
BspANI GGCC 9 cut(s) 789, 999, 1322, 2312, 2589, 2679, 2739, 2850, 3740
BspEI TCCGGA 1 cut(s) 152
BspFNI CGCG 1 cut(s) 3203
BspHI TCATGA 1 cut(s) 1131
BspMAI CTGCAG 1 cut(s) 718
BspPI GGATC 8 cut(s) 364, 413, 1405, 1469, 1904, 1917, 3078, 3237
BspT104I TTCGAA 1 cut(s) 2784
BspT107I GGYRCC 2 cut(s) 2361, 3519
BspTNI GGTCTC 2 cut(s) 1350, 1693
BsrDI GCAATG 5 cut(s) 1884, 3279, 3486, 3600, 3869
BsrGI TGTACA 2 cut(s) 2057, 2994
BssECI CCNNGG 4 cut(s) 1735, 1779, 2688, 3576
BssNI GRCGYC 1 cut(s) 1535
BssT1I CCWWGG 3 cut(s) 1735, 1779, 3576
Bst2UI CCWGG 9 cut(s) 901, 983, 1395, 1764, 1907, 2247, 2577, 2689, 2932
Bst6I CTCTTC 4 cut(s) 385, 626, 1130, 1370
BstACI GRCGYC 1 cut(s) 1535
BstAPI GCANNNNNTGC 2 cut(s) 117, 3123
BstAUI TGTACA 2 cut(s) 2057, 2994
BstBAI YACGTR 2 cut(s) 225, 812
BstBI TTCGAA 1 cut(s) 2784
BstC8I GCNNGC 8 cut(s) 738, 1020, 1588, 2284, 2389, 2408, 3124, 3251
BstDSI CCRYGG 1 cut(s) 3576
BstENI CCTNNNNNAGG 2 cut(s) 1033, 3057
BstFNI CGCG 1 cut(s) 3203
BstMAI GTCTC 8 cut(s) 314, 997, 1350, 1693, 1806, 3750, 3763, 3770
BstMWI GCNNNNNNNGC 7 cut(s) 117, 335, 983, 1064, 2539, 2693, 3123
BstNI CCWGG 9 cut(s) 901, 983, 1395, 1764, 1907, 2247, 2577, 2689, 2932
BstNSI RCATGY 4 cut(s) 373, 1484, 1510, 2170
BstSCI CCNGG 9 cut(s) 899, 981, 1393, 1762, 1905, 2245, 2575, 2687, 2930
BstSFI CTRYAG 3 cut(s) 714, 731, 1770
BstSLI GKGCMC 1 cut(s) 928
BstSNI TACGTA 1 cut(s) 225
BstUI CGCG 1 cut(s) 3203
BstV2I GAAGAC 1 cut(s) 193
BstX2I RGATCY 6 cut(s) 199, 206, 1410, 1909, 3070, 3229
BstXI CCANNNNNNTGG 4 cut(s) 529, 1007, 1668, 2299
BstYI RGATCY 6 cut(s) 199, 206, 1410, 1909, 3070, 3229
Bsu36I CCTNAGG 3 cut(s) 1926, 2484, 3058
BsuI GTATCC 4 cut(s) 1395, 1853, 2324, 3812
BsuRI GGCC 9 cut(s) 789, 999, 1322, 2312, 2589, 2679, 2739, 2850, 3740
BtgI CCRYGG 1 cut(s) 3576
BtgZI GCGATG 2 cut(s) 1304, 3184
BtsI GCAGTG 1 cut(s) 3855
BtsIMutI CAGTG 9 cut(s) 318, 323, 960, 1233, 2733, 3139, 3333, 3363, 3855
Cac8I GCNNGC 8 cut(s) 738, 1020, 1588, 2284, 2389, 2408, 3124, 3251
CciI TCATGA 1 cut(s) 1131
Cfr13I GGNCC 7 cut(s) 140, 605, 806, 1792, 2840, 3310, 3723
CseI GACGC 2 cut(s) 983, 1524
CsiI ACCWGGT 2 cut(s) 1762, 2575
DraIII CACNNNGTG 1 cut(s) 2192
DriI GACNNNNNGTC 1 cut(s) 2249
EaeI YGGCCR 5 cut(s) 787, 997, 1320, 2310, 3738
Eam1104I CTCTTC 4 cut(s) 385, 626, 1130, 1370
Eam1105I GACNNNNNGTC 1 cut(s) 2249
EarI CTCTTC 4 cut(s) 385, 626, 1130, 1370
Ecl136II GAGCTC 1 cut(s) 617
Eco105I TACGTA 1 cut(s) 225
Eco130I CCWWGG 3 cut(s) 1735, 1779, 3576
Eco147I AGGCCT 1 cut(s) 2850
Eco24I GRGCYC 2 cut(s) 619, 3281
Eco31I GGTCTC 2 cut(s) 1350, 1693
Eco32I GATATC 4 cut(s) 433, 636, 2355, 2419
Eco47I GGWCC 7 cut(s) 140, 605, 806, 1792, 2840, 3310, 3723
Eco53kI GAGCTC 1 cut(s) 617
Eco57I CTGAAG 2 cut(s) 1817, 2934
Eco72I CACGTG 1 cut(s) 812
Eco81I CCTNAGG 3 cut(s) 1926, 2484, 3058
Eco88I CYCGRG 6 cut(s) 559, 857, 1647, 3233, 3305, 3773
EcoICRI GAGCTC 1 cut(s) 617
EcoNI CCTNNNNNAGG 2 cut(s) 1033, 3057
EcoO109I RGGNCCY 1 cut(s) 140
EcoRI GAATTC 2 cut(s) 836, 1730
EcoRII CCWGG 9 cut(s) 899, 981, 1393, 1762, 1905, 2245, 2575, 2687, 2930
EcoRV GATATC 4 cut(s) 433, 636, 2355, 2419
EcoT14I CCWWGG 3 cut(s) 1735, 1779, 3576
EcoT22I ATGCAT 1 cut(s) 3119
EcoT38I GRGCYC 2 cut(s) 619, 3281
ErhI CCWWGG 3 cut(s) 1735, 1779, 3576
FaqI GGGAC 4 cut(s) 126, 519, 840, 1011
FbaI TGATCA 2 cut(s) 1446, 3033
FriOI GRGCYC 2 cut(s) 619, 3281
FspBI CTAG 7 cut(s) 339, 387, 455, 1023, 1116, 2502, 2769
GsuI CTGGAG 1 cut(s) 1998
HaeIII GGCC 9 cut(s) 789, 999, 1322, 2312, 2589, 2679, 2739, 2850, 3740
HapII CCGG 3 cut(s) 153, 1539, 2313
HgaI GACGC 2 cut(s) 983, 1524
Hin1I GRCGYC 1 cut(s) 1535
HincII GTYRAC 2 cut(s) 1084, 2980
HindII GTYRAC 2 cut(s) 1084, 2980
HindIII AAGCTT 2 cut(s) 2044, 2787
HinfI GANTC 9 cut(s) 579, 1251, 1775, 2250, 2447, 2492, 3180, 3489, 3771
HpaI GTTAAC 2 cut(s) 1084, 2980
HpaII CCGG 3 cut(s) 153, 1539, 2313
HphI GGTGA 5 cut(s) 904, 1022, 1456, 2834, 3532
Hpy166II GTNNAC 7 cut(s) 676, 809, 932, 1084, 2731, 2980, 2995
Hpy8I GTNNAC 7 cut(s) 676, 809, 932, 1084, 2731, 2980, 2995
HpyCH4IV ACGT 3 cut(s) 224, 811, 928
HpyF10VI GCNNNNNNNGC 7 cut(s) 117, 335, 983, 1064, 2539, 2693, 3123
HpySE526I ACGT 3 cut(s) 224, 811, 928
Hsp92I GRCGYC 1 cut(s) 1535
Kpn2I TCCGGA 1 cut(s) 152
KpnI GGTACC 2 cut(s) 2365, 3523
Ksp22I TGATCA 2 cut(s) 1446, 3033
KspAI GTTAAC 2 cut(s) 1084, 2980
LmnI GCTCC 5 cut(s) 1749, 2530, 2539, 2558, 3246
LweI GCATC 4 cut(s) 564, 585, 1212, 2674
MabI ACCWGGT 2 cut(s) 1762, 2575
MaeI CTAG 7 cut(s) 339, 387, 455, 1023, 1116, 2502, 2769
MaeII ACGT 3 cut(s) 224, 811, 928
MaeIII GTNAC 9 cut(s) 220, 580, 892, 952, 958, 1509, 1967, 2434, 2581
MfeI CAATTG 1 cut(s) 3336
MflI RGATCY 6 cut(s) 199, 206, 1410, 1909, 3070, 3229
MhlI GDGCHC 6 cut(s) 619, 825, 928, 1592, 2563, 3281
MlsI TGGCCA 3 cut(s) 789, 999, 1322
MluNI TGGCCA 3 cut(s) 789, 999, 1322
MlyI GAGTC 4 cut(s) 588, 2259, 3174, 3765
MmeI TCCRAC 6 cut(s) 334, 583, 1221, 1727, 1837, 2919
Mox20I TGGCCA 3 cut(s) 789, 999, 1322
Mph1103I ATGCAT 1 cut(s) 3119
MroI TCCGGA 1 cut(s) 152
MroXI GAANNNNTTC 2 cut(s) 1730, 3644
MscI TGGCCA 3 cut(s) 789, 999, 1322
MslI CAYNNNNRTG 5 cut(s) 1442, 1721, 2165, 2297, 2990
Msp20I TGGCCA 3 cut(s) 789, 999, 1322
MspA1I CMGCKG 1 cut(s) 3380
MspI CCGG 3 cut(s) 153, 1539, 2313
MspR9I CCNGG 9 cut(s) 901, 983, 1395, 1764, 1907, 2247, 2577, 2689, 2932
MunI CAATTG 1 cut(s) 3336
Mva1269I GAATGC 3 cut(s) 113, 977, 3322
MvaI CCWGG 9 cut(s) 901, 983, 1395, 1764, 1907, 2247, 2577, 2689, 2932
MvnI CGCG 1 cut(s) 3203
MwoI GCNNNNNNNGC 7 cut(s) 117, 335, 983, 1064, 2539, 2693, 3123
NcoI CCATGG 1 cut(s) 3576
NmuCI GTSAC 3 cut(s) 580, 892, 958
NsiI ATGCAT 1 cut(s) 3119
NspI RCATGY 4 cut(s) 373, 1484, 1510, 2170
NspV TTCGAA 1 cut(s) 2784
OliI CACNNNNGTG 1 cut(s) 2990
PaeR7I CTCGAG 2 cut(s) 1647, 3773
PagI TCATGA 1 cut(s) 1131
PceI AGGCCT 1 cut(s) 2850
PciI ACATGT 3 cut(s) 369, 1480, 1506
PcsI WCGNNNNNNNCGW 1 cut(s) 3780
PctI GAATGC 3 cut(s) 113, 977, 3322
PdmI GAANNNNTTC 2 cut(s) 1730, 3644
PfeI GAWTC 5 cut(s) 1251, 1775, 2447, 2492, 3489
PflMI CCANNNNNTGG 2 cut(s) 2675, 3118
PfoI TCCNGGA 1 cut(s) 899
PleI GAGTC 4 cut(s) 587, 2258, 3174, 3765
PmaCI CACGTG 1 cut(s) 812
PmlI CACGTG 1 cut(s) 812
PpsI GAGTC 4 cut(s) 587, 2258, 3174, 3765
Ppu21I YACGTR 2 cut(s) 225, 812
PpuMI RGGWCCY 1 cut(s) 140
PscI ACATGT 3 cut(s) 369, 1480, 1506
PshBI ATTAAT 1 cut(s) 2889
Psp124BI GAGCTC 1 cut(s) 619
Psp5II RGGWCCY 1 cut(s) 140
Psp6I CCWGG 9 cut(s) 899, 981, 1393, 1762, 1905, 2245, 2575, 2687, 2930
PspCI CACGTG 1 cut(s) 812
PspGI CCWGG 9 cut(s) 899, 981, 1393, 1762, 1905, 2245, 2575, 2687, 2930
PspPI GGNCC 7 cut(s) 140, 605, 806, 1792, 2840, 3310, 3723
PspPPI RGGWCCY 1 cut(s) 140
PstI CTGCAG 1 cut(s) 718
PsuI RGATCY 6 cut(s) 199, 206, 1410, 1909, 3070, 3229
PvuII CAGCTG 1 cut(s) 3380
RseI CAYNNNNRTG 5 cut(s) 1442, 1721, 2165, 2297, 2990
SacI GAGCTC 1 cut(s) 619
Sau96I GGNCC 7 cut(s) 140, 605, 806, 1792, 2840, 3310, 3723
ScaI AGTACT 2 cut(s) 1935, 2876
SchI GAGTC 4 cut(s) 588, 2259, 3174, 3765
ScrFI CCNGG 9 cut(s) 901, 983, 1395, 1764, 1907, 2247, 2577, 2689, 2932
SduI GDGCHC 6 cut(s) 619, 825, 928, 1592, 2563, 3281
SexAI ACCWGGT 2 cut(s) 1762, 2575
SfaNI GCATC 4 cut(s) 564, 585, 1212, 2674
SfcI CTRYAG 3 cut(s) 714, 731, 1770
Sfr274I CTCGAG 2 cut(s) 1647, 3773
SfuI TTCGAA 1 cut(s) 2784
SinI GGWCC 7 cut(s) 140, 605, 806, 1792, 2840, 3310, 3723
SlaI CTCGAG 2 cut(s) 1647, 3773
SmiMI CAYNNNNRTG 5 cut(s) 1442, 1721, 2165, 2297, 2990
SmlI CTYRAG 5 cut(s) 494, 1406, 1496, 1647, 3773
SmoI CTYRAG 5 cut(s) 494, 1406, 1496, 1647, 3773
SnaBI TACGTA 1 cut(s) 225
SseBI AGGCCT 1 cut(s) 2850
SsiI CCGC 2 cut(s) 1955, 3741
SspI AATATT 1 cut(s) 1206
SspMI CTAG 7 cut(s) 339, 387, 455, 1023, 1116, 2502, 2769
SstI GAGCTC 1 cut(s) 619
StuI AGGCCT 1 cut(s) 2850
StyD4I CCNGG 9 cut(s) 899, 981, 1393, 1762, 1905, 2245, 2575, 2687, 2930
StyI CCWWGG 3 cut(s) 1735, 1779, 3576
TaiI ACGT 3 cut(s) 227, 814, 931
TatI WGTACW 8 cut(s) 1503, 1933, 2057, 2874, 2994, 3075, 3387, 3534
TauI GCSGC 1 cut(s) 3743
TfiI GAWTC 5 cut(s) 1251, 1775, 2447, 2492, 3489
TscAI CASTG 9 cut(s) 318, 330, 967, 1240, 2733, 3146, 3333, 3363, 3855
TseFI GTSAC 3 cut(s) 580, 892, 958
Tsp45I GTSAC 3 cut(s) 580, 892, 958
TspGWI ACGGA 1 cut(s) 1986
TspRI CASTG 9 cut(s) 318, 330, 967, 1240, 2733, 3146, 3333, 3363, 3855
Van91I CCANNNNNTGG 2 cut(s) 2675, 3118
VpaK11BI GGWCC 7 cut(s) 140, 605, 806, 1792, 2840, 3310, 3723
VspI ATTAAT 1 cut(s) 2889
XagI CCTNNNNNAGG 2 cut(s) 1033, 3057
XapI RAATTY 3 cut(s) 248, 836, 1730
XbaI TCTAGA 2 cut(s) 386, 1115
XceI RCATGY 4 cut(s) 373, 1484, 1510, 2170
XcmI CCANNNNNNNNNTGG 4 cut(s) 169, 529, 1760, 1824
XhoI CTCGAG 2 cut(s) 1647, 3773
XmnI GAANNNNTTC 2 cut(s) 1730, 3644
XspI CTAG 7 cut(s) 339, 387, 455, 1023, 1116, 2502, 2769
ZrmI AGTACT 2 cut(s) 1935, 2876
Zsp2I ATGCAT 1 cut(s) 3119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.