Rh7DG199300
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
18770290 .. 18772906
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG199300.1

Sequence Viewer

Length: 1665 bp
ATGGGTGTTAGTGGTGCTGGAAAAACCACTCTCATGGATGTCTTGGCAGGAAGGAAGACAAGTGGGTATATTGAGGGGAGGATCACCTTATCTGGATATGCAAAAAGGCAAGAAACATTTGCTCGCATATCAGGATACTGTGAACAAACAGATATACACTCCCCTCATGTTACAGTTTACGAGTCTTTGGTTTACTCTGCATGGCTCCGGTTGCCCCAGGAGGTTGATTCCCCAACCAGAAAGATGTTTATTGAGGAGGTTATGGAGCTTGTAGAAATGACCTCAATAAGTGACAGACTTGTTGGATTGCCAGGAGTGAATGGTCTCTCAACTGAACAACGCAAAAGGCTAACAATTGCAGTAGAGCTTGTTGCCAACCCCTCGATAATATTTATGGATGAGCCGACTTCTGGCCTTGATGCTAGGGCAGCAGCAATTGTAATGAGAACGGTGAGGAATACAGTGGACACTGGGAGAACTGTAGTCTGTACAATCCACCAACCAAGCATTGATATATTTGATGCATTTGATGAGATGTTGCTTCTGAAACAGGGAGGCGAAGAAATATATGTTGGCCCTTTAGGCCACCATTCTTCCCAGATGATCGAATACTTTGAGGAGATTAGTGGAGTTTCTAAAATCAAGGATGGTTACAATCCAGCAACCTGGATGTTGGAGGTTACTTCTCCAGCACAAGAAGCATCTCTTGGGGTTGATTTTGCCAAAATATACAAGAATTCAGAAATATATAGGACAAATAAGGCATTGATAAAGGAACTAAGTACTCCTGCACCAAATTCAAAGGACTTGTACTTCCCAACACAATATTCGCAGTCTTTCTTTACCCAGTGTCTAGCTTGCCTATGGAAACAGAGTGTATCATATTGGCGAAACCCTCAATACACCGCAGTAAGACTTCTTTTCACAGCTATGATGGCCGGACTACTTGGGTCATTTTTCTGGGATCTTGGCTCCAAAAGACAAAAGCAAAGAGATCTCTTTTGTGCGATGGGTTCTATGTATGCTGCTGTGCTTTTTCTTGGTATACAAAATTCCTTGTCAGTGCAGCCAATCATAGGTGTTGAGAGGTTGGTCTCTTACAGAGAAACGGCTGCTGGAATGTACTCAGCTTTTCCATTTGCCTTTGGACAGGCTATCATTGAGATCCCGTACACTTTGATCCAGACTATTATATATGGGGTCATAGTATACTCCATGGTCGGATTTGATTGGACAGTCAGCAAGTTCTTTTGTTATCTCTTGTTCATGTACCTCACCTTCTTATACTTCACCTTCCATGGCATGATGATTGTGGCCATTACTCCCAACAACACCATCTCTGCTGTAGTTTCGTCTGCCTTCTATCCATTATGGAATGTTATTTCAGGATATCTCATTCCCAAAACAAGAATTCCAATATGGTGGAGATGGTTCTATTGGGTCAGCCCAACCTCTTGGAGCTTGTATGGATTGTTTTCTTCACAGTTTGGAGGTCTCAAGGACACACTTGATTCTGGTGAAACTGTAGATCATTTTATGAGGACATATTTTGGATATAGGAAAGACTTTCTAGGTGTTGTTGTAGCTGTACTTGTTGGGTTTTCAGCGTTCTTTGTTTTCATCTTTGCTTTTGCGATCAAGAAACTAAACTTCCAAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

554

Amino Acids

62.65

Weight (kDa)

8.04

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 1 - 137 2.5e-17 ABC transporter
ABC2_membrane PF01061 282 - 496 8.3e-54 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1045, 1209
AciI CCGC 1 cut(s) 906
AclWI GGATC 4 cut(s) 89, 972, 1159, 1174
AcoI YGGCCR 2 cut(s) 936, 1314
AcsI RAATTY 4 cut(s) 736, 796, 1051, 1410
AfaI GTAC 7 cut(s) 490, 784, 812, 1124, 1172, 1271, 1590
AfiI CCNNNNNNNGG 2 cut(s) 410, 1076
AgsI TTSAA 1 cut(s) 801
AjnI CCWGG 3 cut(s) 216, 310, 665
AjuI GAANNNNNNNTTGG 6 cut(s) 555, 587, 690, 722, 811, 843
AluBI AGCT 7 cut(s) 268, 367, 857, 929, 1130, 1461, 1586
AluI AGCT 7 cut(s) 268, 367, 857, 929, 1130, 1461, 1586
Alw26I GTCTC 3 cut(s) 329, 1099, 1499
AlwI GGATC 4 cut(s) 89, 972, 1159, 1174
AoxI GGCC 5 cut(s) 412, 574, 583, 936, 1314
ApeKI GCWGC 5 cut(s) 428, 431, 1025, 1066, 1112
ApoI RAATTY 4 cut(s) 736, 796, 1051, 1410
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 5 cut(s) 76, 463, 1267, 1282, 1529
BalI TGGCCA 1 cut(s) 1316
BarI GAAGNNNNNNTAC 2 cut(s) 1262, 1294
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 5 cut(s) 440, 443, 1012, 1078, 1099
BccI CCATC 5 cut(s) 641, 928, 1003, 1343, 1422
BceAI ACGGC 1 cut(s) 1125
BciT130I CCWGG 3 cut(s) 218, 312, 667
BciVI GTATCC 1 cut(s) 128
BcoDI GTCTC 3 cut(s) 329, 1099, 1499
BfaI CTAG 3 cut(s) 423, 854, 1571
BfmI CTRYAG 3 cut(s) 480, 1344, 1524
BfuI GTATCC 1 cut(s) 128
BglI GCCNNNNNGGC 1 cut(s) 582
BglII AGATCT 1 cut(s) 994
BisI GCNGC 5 cut(s) 429, 432, 1026, 1067, 1113
BlsI GCNGC 5 cut(s) 430, 433, 1027, 1068, 1114
BmcAI AGTACT 1 cut(s) 784
Bme1390I CCNGG 3 cut(s) 218, 312, 667
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 2 cut(s) 206, 973
BmrFI CCNGG 3 cut(s) 218, 312, 667
BmrI ACTGGG 2 cut(s) 480, 841
BmsI GCATC 3 cut(s) 409, 511, 710
BmuI ACTGGG 2 cut(s) 480, 841
BpiI GAAGAC 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 672
BpuEI CTTGAG 1 cut(s) 1481
BsaI GGTCTC 3 cut(s) 329, 1099, 1499
BsaJI CCNNGG 3 cut(s) 216, 1215, 1297
BsaWI WCCGGW 1 cut(s) 207
Bsc4I CCNNNNNNNGG 2 cut(s) 410, 1076
Bse1I ACTGG 2 cut(s) 475, 847
BseBI CCWGG 3 cut(s) 218, 312, 667
BseDI CCNNGG 3 cut(s) 216, 1215, 1297
BseGI GGATG 4 cut(s) 43, 403, 652, 675
BseLI CCNNNNNNNGG 2 cut(s) 410, 1076
BseMII CTCAG 1 cut(s) 1140
BseNI ACTGG 2 cut(s) 475, 847
BseRI GAGGAG 2 cut(s) 269, 632
BseXI GCAGC 5 cut(s) 440, 443, 1012, 1078, 1099
BsgI GTGCAG 2 cut(s) 774, 1085
BshFI GGCC 5 cut(s) 414, 576, 585, 938, 1316
BsiSI CCGG 2 cut(s) 208, 939
BslI CCNNNNNNNGG 2 cut(s) 410, 1076
BsmAI GTCTC 3 cut(s) 329, 1099, 1499
BsnI GGCC 5 cut(s) 414, 576, 585, 938, 1316
Bso31I GGTCTC 3 cut(s) 329, 1099, 1499
Bsp1407I TGTACA 1 cut(s) 488
Bsp143I GATC 8 cut(s) 81, 603, 964, 994, 1164, 1179, 1528, 1635
Bsp19I CCATGG 2 cut(s) 1215, 1297
BspACI CCGC 1 cut(s) 906
BspANI GGCC 5 cut(s) 414, 576, 585, 938, 1316
BspCNI CTCAG 1 cut(s) 1139
BspLI GGNNCC 2 cut(s) 206, 973
BspPI GGATC 4 cut(s) 89, 972, 1159, 1174
BspTNI GGTCTC 3 cut(s) 329, 1099, 1499
BsrGI TGTACA 1 cut(s) 488
BsrI ACTGG 2 cut(s) 475, 847
BssECI CCNNGG 3 cut(s) 216, 1215, 1297
BssMI GATC 8 cut(s) 81, 603, 964, 994, 1164, 1179, 1528, 1635
BssNAI GTATAC 2 cut(s) 1046, 1210
BssT1I CCWWGG 2 cut(s) 1215, 1297
Bst1107I GTATAC 2 cut(s) 1046, 1210
Bst2UI CCWGG 3 cut(s) 218, 312, 667
Bst4CI ACNGT 8 cut(s) 140, 175, 451, 463, 481, 1237, 1485, 1525
BstAUI TGTACA 1 cut(s) 488
BstC8I GCNNGC 2 cut(s) 124, 859
BstDEI CTNAG 2 cut(s) 779, 1126
BstDSI CCRYGG 2 cut(s) 1215, 1297
BstF5I GGATG 4 cut(s) 43, 403, 652, 675
BstKTI GATC 8 cut(s) 84, 606, 967, 997, 1167, 1182, 1531, 1638
BstMAI GTCTC 3 cut(s) 329, 1099, 1499
BstMBI GATC 8 cut(s) 81, 603, 964, 994, 1164, 1179, 1528, 1635
BstMWI GCNNNNNNNGC 5 cut(s) 211, 428, 582, 698, 935
BstNI CCWGG 3 cut(s) 218, 312, 667
BstSCI CCNGG 3 cut(s) 216, 310, 665
BstSFI CTRYAG 3 cut(s) 480, 1344, 1524
BstV1I GCAGC 5 cut(s) 440, 443, 1012, 1078, 1099
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 3 cut(s) 964, 994, 1164
BstXI CCANNNNNNTGG 4 cut(s) 34, 666, 1422, 1455
BstYI RGATCY 3 cut(s) 964, 994, 1164
BstZ17I GTATAC 2 cut(s) 1046, 1210
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 5 cut(s) 414, 576, 585, 938, 1316
BtgI CCRYGG 2 cut(s) 1215, 1297
BtgZI GCGATG 1 cut(s) 1022
BtsCI GGATG 4 cut(s) 43, 403, 652, 675
BtsIMutI CAGTG 4 cut(s) 468, 468, 854, 1068
Cac8I GCNNGC 2 cut(s) 124, 859
Cfr13I GGNCC 1 cut(s) 575
Csp6I GTAC 7 cut(s) 489, 783, 811, 1123, 1171, 1270, 1589
CviAII CATG 7 cut(s) 34, 167, 201, 1216, 1267, 1298, 1303
CviQI GTAC 7 cut(s) 489, 783, 811, 1123, 1171, 1270, 1589
DdeI CTNAG 2 cut(s) 779, 1126
DpnI GATC 8 cut(s) 83, 605, 966, 996, 1166, 1181, 1530, 1637
DpnII GATC 8 cut(s) 81, 603, 964, 994, 1164, 1179, 1528, 1635
EaeI YGGCCR 2 cut(s) 936, 1314
Eco130I CCWWGG 2 cut(s) 1215, 1297
Eco31I GGTCTC 3 cut(s) 329, 1099, 1499
Eco32I GATATC 1 cut(s) 1391
EcoRI GAATTC 2 cut(s) 736, 1410
EcoRII CCWGG 3 cut(s) 216, 310, 665
EcoRV GATATC 1 cut(s) 1391
EcoT14I CCWWGG 2 cut(s) 1215, 1297
EcoT22I ATGCAT 1 cut(s) 526
ErhI CCWWGG 2 cut(s) 1215, 1297
FaeI CATG 7 cut(s) 37, 170, 204, 1219, 1270, 1301, 1306
FalI AAGNNNNNCTT 2 cut(s) 690, 722
FatI CATG 7 cut(s) 33, 166, 200, 1215, 1266, 1297, 1302
FblI GTMKAC 2 cut(s) 1045, 1209
Fnu4HI GCNGC 5 cut(s) 429, 432, 1026, 1067, 1113
FokI GGATG 4 cut(s) 50, 410, 659, 682
Fsp4HI GCNGC 5 cut(s) 429, 432, 1026, 1067, 1113
FspBI CTAG 3 cut(s) 423, 854, 1571
GluI GCNGC 5 cut(s) 429, 432, 1026, 1067, 1113
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 5 cut(s) 414, 576, 585, 938, 1316
HapII CCGG 2 cut(s) 208, 939
Hin1II CATG 7 cut(s) 37, 170, 204, 1219, 1270, 1301, 1306
HinfI GANTC 3 cut(s) 182, 227, 1511
HpaII CCGG 2 cut(s) 208, 939
HphI GGTGA 5 cut(s) 76, 463, 1267, 1282, 1529
Hpy166II GTNNAC 7 cut(s) 143, 178, 193, 466, 1046, 1173, 1210
Hpy188I TCNGA 3 cut(s) 546, 742, 1223
Hpy188III TCNNGA 5 cut(s) 93, 132, 1183, 1386, 1639
Hpy8I GTNNAC 7 cut(s) 143, 178, 193, 466, 1046, 1173, 1210
HpyAV CCTTC 4 cut(s) 45, 1288, 1303, 1369
HpyCH4III ACNGT 8 cut(s) 140, 175, 451, 463, 481, 1237, 1485, 1525
HpyCH4V TGCA 6 cut(s) 101, 200, 359, 524, 791, 1066
HpyF10VI GCNNNNNNNGC 5 cut(s) 211, 428, 582, 698, 935
HpyF3I CTNAG 2 cut(s) 779, 1126
Hsp92II CATG 7 cut(s) 37, 170, 204, 1219, 1270, 1301, 1306
Kzo9I GATC 8 cut(s) 81, 603, 964, 994, 1164, 1179, 1528, 1635
LmnI GCTCC 4 cut(s) 210, 265, 977, 1458
Lsp1109I GCAGC 5 cut(s) 440, 443, 1012, 1078, 1099
LweI GCATC 3 cut(s) 409, 511, 710
MaeI CTAG 3 cut(s) 423, 854, 1571
MaeIII GTNAC 4 cut(s) 169, 290, 650, 679
MalI GATC 8 cut(s) 83, 605, 966, 996, 1166, 1181, 1530, 1637
MboI GATC 8 cut(s) 81, 603, 964, 994, 1164, 1179, 1528, 1635
MboII GAAGA 4 cut(s) 67, 572, 585, 1470
MfeI CAATTG 2 cut(s) 354, 435
MflI RGATCY 3 cut(s) 964, 994, 1164
MlsI TGGCCA 1 cut(s) 1316
MluCI AATT 6 cut(s) 354, 435, 736, 796, 1051, 1410
MluNI TGGCCA 1 cut(s) 1316
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 3 cut(s) 283, 654, 1201
Mox20I TGGCCA 1 cut(s) 1316
Mph1103I ATGCAT 1 cut(s) 526
MscI TGGCCA 1 cut(s) 1316
MslI CAYNNNNRTG 2 cut(s) 32, 929
Msp20I TGGCCA 1 cut(s) 1316
MspI CCGG 2 cut(s) 208, 939
MspR9I CCNGG 3 cut(s) 218, 312, 667
MunI CAATTG 2 cut(s) 354, 435
MvaI CCWGG 3 cut(s) 218, 312, 667
MwoI GCNNNNNNNGC 5 cut(s) 211, 428, 582, 698, 935
NcoI CCATGG 2 cut(s) 1215, 1297
NdeII GATC 8 cut(s) 81, 603, 964, 994, 1164, 1179, 1528, 1635
NlaIII CATG 7 cut(s) 37, 170, 204, 1219, 1270, 1301, 1306
NlaIV GGNNCC 2 cut(s) 206, 973
NmuCI GTSAC 1 cut(s) 290
NsiI ATGCAT 1 cut(s) 526
PfeI GAWTC 2 cut(s) 227, 1511
PkrI GCNGC 5 cut(s) 430, 433, 1027, 1068, 1114
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp6I CCWGG 3 cut(s) 216, 310, 665
PspGI CCWGG 3 cut(s) 216, 310, 665
PspN4I GGNNCC 2 cut(s) 206, 973
PspPI GGNCC 1 cut(s) 575
PsuI RGATCY 3 cut(s) 964, 994, 1164
RsaI GTAC 7 cut(s) 490, 784, 812, 1124, 1172, 1271, 1590
RsaNI GTAC 7 cut(s) 489, 783, 811, 1123, 1171, 1270, 1589
RseI CAYNNNNRTG 2 cut(s) 32, 929
SatI GCNGC 5 cut(s) 429, 432, 1026, 1067, 1113
Sau3AI GATC 8 cut(s) 81, 603, 964, 994, 1164, 1179, 1528, 1635
Sau96I GGNCC 1 cut(s) 575
ScaI AGTACT 1 cut(s) 784
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 3 cut(s) 218, 312, 667
SfaNI GCATC 3 cut(s) 409, 511, 710
SfcI CTRYAG 3 cut(s) 480, 1344, 1524
SfiI GGCCNNNNNGGCC 1 cut(s) 582
SmiMI CAYNNNNRTG 2 cut(s) 32, 929
SmlI CTYRAG 1 cut(s) 1496
SmoI CTYRAG 1 cut(s) 1496
Sse9I AATT 6 cut(s) 354, 435, 736, 796, 1051, 1410
SsiI CCGC 1 cut(s) 906
SspI AATATT 2 cut(s) 390, 827
SspMI CTAG 3 cut(s) 423, 854, 1571
StyD4I CCNGG 3 cut(s) 216, 310, 665
StyI CCWWGG 2 cut(s) 1215, 1297
TaaI ACNGT 8 cut(s) 140, 175, 451, 463, 481, 1237, 1485, 1525
TaqI TCGA 2 cut(s) 383, 606
TasI AATT 6 cut(s) 354, 435, 736, 796, 1051, 1410
TatI WGTACW 5 cut(s) 488, 782, 810, 1122, 1588
TfiI GAWTC 2 cut(s) 227, 1511
TscAI CASTG 4 cut(s) 468, 475, 854, 1068
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 5 cut(s) 428, 431, 1025, 1066, 1112
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 1255, 1609
TspRI CASTG 4 cut(s) 468, 475, 854, 1068
XapI RAATTY 4 cut(s) 736, 796, 1051, 1410
XmiI GTMKAC 2 cut(s) 1045, 1209
XspI CTAG 3 cut(s) 423, 854, 1571
ZrmI AGTACT 1 cut(s) 784
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.