Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000493

Physical Location & Seq

Genomic Coordinates Reverse (-)

5049455 .. 5081367

Gene Structure 31913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGGATCCGCGCTGCGGACGGGCCATCACTCGGAAATTTGACCCATCAAAACTTTGGAGCAGATAGCTTATTCAGCAGGCAAGCGTATGATATCATGCTCCATGTTCACTGCTTGGAACTTGACCATGTTGTGGAAGAACTGGAGAAAATTGCTATTGTCAATCTTCTTCAACACCGATCAATAATATCTCTCATTGGAGATGTGCAGAAATCATCACTAATATTAGAGAAGGTGGCGGGCCGGAAATTTCCGAAACCGGCGAGAAAATGCGAGAAACCGTTAGCAACTCCGGTTTGCCGGAGTTTGAGGCTTTCCGGTGGAAACGATCGAGTACGGTGGAAAGGAGGCGTCGAGGCGAAGGCAATGGAGTTCACTAAAATCCAACAACTTCGACAAAGAAATCACAAGGAAGATTACCAACAAGCGATCGGAATTTCCGTGGTTGGGCTCGGTGATCCATACTTCACCATAGTTGTCGGTTCTGTTCACCACACGGTCGAGTCGCTGCCATCAAGGTTCGGTAGCTGCATCCAGTTTTGGACAGCTGCATCAAGCTTCGACACTGCCTCCGCTTCTACCGCTGCCATTAACCGAGCTCCGGCGAGCTACTACACCTACCATATTTGTCCCAACGGGAGCTTCCCTAAGAAAGCCCTTGTAATTGGAGGAGGAATTGCTAACTTCACCGATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGAGAGGAGGTCCCAACTACCGAGGGGACTCGCAGAGGACACTTGCAGAGGAAATTGGCCACTCCCTATTGAGGAAAACAATTGGATTCTTAAAATCATCAAATTGTTACATAGACTTGAACGACTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004072 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016774 GO:0019202 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

289

Amino Acids

32.07

Weight (kDa)

9.31

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	217 - 249	4.6e-11	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000493)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica	MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica	Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis	pycom02g02690 pycom08g11890
rosa_chinensis	RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata	RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora	Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii	Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa	Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha	Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana	Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	133
AccII	CGCG	1 cut(s)	12
AciI	CCGC	5 cut(s)	10, 17, 239, 573, 582
AclWI	GGATC	2 cut(s)	14, 452
AcoI	YGGCCR	1 cut(s)	794
AcsI	RAATTY	3 cut(s)	37, 248, 435
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	6 cut(s)	16, 32, 133, 447, 601, 808
AgsI	TTSAA	4 cut(s)	173, 709, 730, 857
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AluBI	AGCT	8 cut(s)	69, 528, 548, 558, 599, 609, 642, 698
AluI	AGCT	8 cut(s)	69, 528, 548, 558, 599, 609, 642, 698
Alw21I	GWGCWC	1 cut(s)	601
AlwI	GGATC	2 cut(s)	14, 452
AoxI	GGCC	3 cut(s)	23, 241, 794
ApeKI	GCWGC	6 cut(s)	14, 508, 528, 548, 584, 698
ApoI	RAATTY	3 cut(s)	37, 248, 435
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	3 cut(s)	23, 241, 747
AsuHPI	GGTGA	4 cut(s)	460, 467, 482, 679
AvaII	GGWCC	1 cut(s)	747
BalI	TGGCCA	1 cut(s)	796
BamHI	GGATCC	1 cut(s)	6
BanII	GRGCYC	2 cut(s)	453, 601
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	5 cut(s)	495, 515, 535, 571, 685
BccI	CCATC	3 cut(s)	34, 54, 520
BcgI	CGANNNNNNTGC	2 cut(s)	680, 714
BisI	GCNGC	6 cut(s)	15, 509, 529, 549, 585, 699
BlsI	GCNGC	6 cut(s)	16, 510, 530, 550, 586, 700
Bme18I	GGWCC	1 cut(s)	747
BmgT120I	GGNCC	3 cut(s)	23, 241, 747
BmiI	GGNNCC	2 cut(s)	8, 749
BmsI	GCATC	2 cut(s)	540, 560
BpmI	CTGGAG	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	441, 758
BsaWI	WCCGGW	2 cut(s)	292, 317
BsaXI	ACNNNNNCTCC	4 cut(s)	554, 584, 731, 761
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 32, 133, 447, 601, 808
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	147, 535
Bse3DI	GCAATG	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	441, 758
BseGI	GGATG	1 cut(s)	531
BseLI	CCNNNNNNNGG	6 cut(s)	16, 32, 133, 447, 601, 808
BseMI	GCAATG	1 cut(s)	372
BseNI	ACTGG	2 cut(s)	147, 535
BseRI	GAGGAG	2 cut(s)	684, 757
BseXI	GCAGC	5 cut(s)	495, 515, 535, 571, 685
BsgI	GTGCAG	1 cut(s)	227
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	3 cut(s)	331, 432, 501
BshFI	GGCC	3 cut(s)	25, 243, 796
BsiEI	CGRYCG	3 cut(s)	331, 432, 501
BsiHKAI	GWGCWC	1 cut(s)	601
BsiSI	CCGG	6 cut(s)	244, 260, 293, 301, 318, 602
BslFI	GGGAC	3 cut(s)	615, 733, 777
BslI	CCNNNNNNNGG	6 cut(s)	16, 32, 133, 447, 601, 808
BsmFI	GGGAC	3 cut(s)	615, 733, 777
BsnI	GGCC	3 cut(s)	25, 243, 796
Bsp1286I	GDGCHC	2 cut(s)	453, 601
Bsp143I	GATC	5 cut(s)	6, 179, 328, 429, 457
BspACI	CCGC	5 cut(s)	10, 17, 239, 573, 582
BspANI	GGCC	3 cut(s)	25, 243, 796
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	8, 749
BspPI	GGATC	2 cut(s)	14, 452
BsrDI	GCAATG	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	147, 535
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	441, 758
BssMI	GATC	5 cut(s)	6, 179, 328, 429, 457
BssNI	GRCGYC	1 cut(s)	351
Bst4CI	ACNGT	3 cut(s)	282, 339, 499
BstACI	GRCGYC	1 cut(s)	351
BstC8I	GCNNGC	4 cut(s)	80, 84, 241, 607
BstDEI	CTNAG	1 cut(s)	648
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	531
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	5 cut(s)	9, 182, 331, 432, 460
BstMBI	GATC	5 cut(s)	6, 179, 328, 429, 457
BstMCI	CGRYCG	3 cut(s)	331, 432, 501
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 581
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	5 cut(s)	495, 515, 535, 571, 685
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	3 cut(s)	25, 243, 796
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	1 cut(s)	531
BtsI	GCAGTG	2 cut(s)	109, 564
BtsIMutI	CAGTG	2 cut(s)	109, 564
Cac8I	GCNNGC	4 cut(s)	80, 84, 241, 607
CfoI	GCGC	1 cut(s)	14
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	3 cut(s)	23, 241, 747
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	3 cut(s)	97, 104, 128
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	1 cut(s)	648
DpnI	GATC	5 cut(s)	8, 181, 330, 431, 459
DpnII	GATC	5 cut(s)	6, 179, 328, 429, 457
EaeI	YGGCCR	1 cut(s)	794
Ecl136II	GAGCTC	1 cut(s)	599
Eco24I	GRGCYC	2 cut(s)	453, 601
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	747
Eco53kI	GAGCTC	1 cut(s)	599
EcoICRI	GAGCTC	1 cut(s)	599
EcoO109I	RGGNCCY	1 cut(s)	747
EcoRV	GATATC	1 cut(s)	94
EcoT38I	GRGCYC	2 cut(s)	453, 601
FaeI	CATG	3 cut(s)	100, 107, 131
FaiI	YATR	8 cut(s)	90, 98, 105, 129, 463, 473, 624, 849
FaqI	GGGAC	3 cut(s)	615, 733, 777
FatI	CATG	3 cut(s)	96, 103, 127
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	6 cut(s)	15, 509, 529, 549, 585, 699
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	2 cut(s)	453, 601
Fsp4HI	GCNGC	6 cut(s)	15, 509, 529, 549, 585, 699
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	6 cut(s)	15, 509, 529, 549, 585, 699
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	3 cut(s)	25, 243, 796
HapII	CCGG	6 cut(s)	244, 260, 293, 301, 318, 602
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	100, 107, 131
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	3 cut(s)	503, 765, 823
HpaII	CCGG	6 cut(s)	244, 260, 293, 301, 318, 602
HphI	GGTGA	4 cut(s)	460, 467, 482, 679
Hpy166II	GTNNAC	3 cut(s)	109, 375, 490
Hpy188I	TCNGA	3 cut(s)	35, 255, 434
Hpy8I	GTNNAC	3 cut(s)	109, 375, 490
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	4 cut(s)	226, 355, 724, 730
HpyCH4III	ACNGT	3 cut(s)	282, 339, 499
HpyCH4V	TGCA	5 cut(s)	208, 531, 551, 701, 783
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 581
HpyF3I	CTNAG	1 cut(s)	648
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	3 cut(s)	100, 107, 131
HspAI	GCGC	1 cut(s)	12
Kzo9I	GATC	5 cut(s)	6, 179, 328, 429, 457
LmnI	GCTCC	4 cut(s)	59, 105, 604, 639
LpnPI	CCDG	9 cut(s)	64, 128, 257, 273, 306, 314, 331, 548, 615
Lsp1109I	GCAGC	5 cut(s)	495, 515, 535, 571, 685
LweI	GCATC	2 cut(s)	540, 560
MaeIII	GTNAC	1 cut(s)	843
MalI	GATC	5 cut(s)	8, 181, 330, 431, 459
MboI	GATC	5 cut(s)	6, 179, 328, 429, 457
MboII	GAAGA	4 cut(s)	149, 158, 161, 425
MfeI	CAATTG	1 cut(s)	817
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	2 cut(s)	453, 601
MlsI	TGGCCA	1 cut(s)	796
MluCI	AATT	9 cut(s)	37, 150, 248, 435, 663, 675, 790, 817, 839
MluNI	TGGCCA	1 cut(s)	796
MlyI	GAGTC	2 cut(s)	512, 759
MmeI	TCCRAC	1 cut(s)	409
Mox20I	TGGCCA	1 cut(s)	796
MscI	TGGCCA	1 cut(s)	796
MseI	TTAA	2 cut(s)	591, 828
Msp20I	TGGCCA	1 cut(s)	796
MspA1I	CMGCKG	2 cut(s)	548, 584
MspI	CCGG	6 cut(s)	244, 260, 293, 301, 318, 602
MunI	CAATTG	1 cut(s)	817
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	75, 581
NdeII	GATC	5 cut(s)	6, 179, 328, 429, 457
NlaIII	CATG	3 cut(s)	100, 107, 131
NlaIV	GGNNCC	2 cut(s)	8, 749
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	823
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	6 cut(s)	16, 510, 530, 550, 586, 700
Ple19I	CGATCG	2 cut(s)	331, 432
PleI	GAGTC	2 cut(s)	511, 759
PpsI	GAGTC	2 cut(s)	511, 759
PpuMI	RGGWCCY	1 cut(s)	747
Psp124BI	GAGCTC	1 cut(s)	601
Psp5II	RGGWCCY	1 cut(s)	747
PspN4I	GGNNCC	2 cut(s)	8, 749
PspPI	GGNCC	3 cut(s)	23, 241, 747
PspPPI	RGGWCCY	1 cut(s)	747
PsuI	RGATCY	1 cut(s)	6
PvuI	CGATCG	2 cut(s)	331, 432
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	601
SaqAI	TTAA	2 cut(s)	591, 828
SatI	GCNGC	6 cut(s)	15, 509, 529, 549, 585, 699
Sau3AI	GATC	5 cut(s)	6, 179, 328, 429, 457
Sau96I	GGNCC	3 cut(s)	23, 241, 747
SchI	GAGTC	2 cut(s)	512, 759
SduI	GDGCHC	2 cut(s)	453, 601
SfaNI	GCATC	2 cut(s)	540, 560
SinI	GGWCC	1 cut(s)	747
Sse9I	AATT	9 cut(s)	37, 150, 248, 435, 663, 675, 790, 817, 839
SsiI	CCGC	5 cut(s)	10, 17, 239, 573, 582
SspI	AATATT	1 cut(s)	225
SstI	GAGCTC	1 cut(s)	601
TaaI	ACNGT	3 cut(s)	282, 339, 499
TaqI	TCGA	5 cut(s)	331, 354, 394, 501, 561
TasI	AATT	9 cut(s)	37, 150, 248, 435, 663, 675, 790, 817, 839
TfiI	GAWTC	1 cut(s)	823
Tru1I	TTAA	2 cut(s)	591, 828
Tru9I	TTAA	2 cut(s)	591, 828
TscAI	CASTG	2 cut(s)	116, 571
TseI	GCWGC	6 cut(s)	14, 508, 528, 548, 584, 698
TspGWI	ACGGA	1 cut(s)	430
TspRI	CASTG	2 cut(s)	116, 571
Van91I	CCANNNNNTGG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	747
XapI	RAATTY	3 cut(s)	37, 248, 435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.