Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001548.1

Orthogroup ID

OG0000493

Physical Location & Seq

Genomic Coordinates Reverse (-)

172029 .. 174234

Gene Structure 2206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001548.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgtatggaatgatggtggttgccctaactcctggccatcaaatcgctgcaattgtcatgggcttcttcatgagtttctggaatttgttctccggtttcctcgtccccagaccggggtggagatcatgtgcagtgaccatgctgggtagagatggtagtgatttgacagctacaaccattggtaaagcacgttggcaggaacttgaccatgttgtggaagaactggagaaaattgttgttgttaatcttcagcgccgatcaataatatctctcattggaaatgtgcagaaatcatcactaatattagagaaggtgttgtactgtgttgggccaagcgacggcaatgtcgccgatgtcgttggtggcgtcgccattgctatttgctacggcgtaaataccgtcgccaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

136

Amino Acids

14.7

Weight (kDa)

6.71

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000493)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica	MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica	Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis	pycom02g02690 pycom08g11890
rosa_chinensis	RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata	RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora	Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii	Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa	Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha	Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana	Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
AccB7I	CCANNNNNTGG	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	5 cut(s)	112, 113, 114, 214, 338
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
AoxI	GGCC	2 cut(s)	34, 329
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	329
AsuC2I	CCSGG	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	36
BarI	GAAGNNNNNNTAC	2 cut(s)	302, 334
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	3 cut(s)	7, 45, 146
BceAI	ACGGC	2 cut(s)	355, 403
BciT130I	CCWGG	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	256
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	33, 114
BmgT120I	GGNCC	1 cut(s)	329
BmrFI	CCNGG	2 cut(s)	33, 114
BpmI	CTGGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bsc4I	CCNNNNNNNGG	5 cut(s)	112, 113, 114, 214, 338
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	2 cut(s)	349, 372
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	113
BseLI	CCNNNNNNNGG	5 cut(s)	112, 113, 114, 214, 338
BseMI	GCAATG	2 cut(s)	349, 372
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	34
BseYI	CCCAGC	1 cut(s)	142
BsgI	GTGCAG	2 cut(s)	150, 305
BshFI	GGCC	2 cut(s)	36, 331
BsiSI	CCGG	2 cut(s)	93, 113
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	5 cut(s)	112, 113, 114, 214, 338
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	36, 331
Bsp143I	GATC	2 cut(s)	122, 257
BspANI	GGCC	2 cut(s)	36, 331
BspHI	TCATGA	1 cut(s)	69
BsrDI	GCAATG	2 cut(s)	349, 372
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	2 cut(s)	122, 257
BssNI	GRCGYC	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	323, 400
BstACI	GRCGYC	1 cut(s)	366
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	2 cut(s)	125, 260
BstMBI	GATC	2 cut(s)	122, 257
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	31, 112
BstV1I	GCAGC	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	36, 331
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	329
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	5 cut(s)	58, 70, 126, 139, 209
CviJI	RGCY	4 cut(s)	36, 63, 170, 331
CviKI_1	RGCY	4 cut(s)	36, 63, 170, 331
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	2 cut(s)	124, 259
DpnII	GATC	2 cut(s)	122, 257
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	31
FaeI	CATG	5 cut(s)	61, 73, 129, 142, 212
FaiI	YATR	6 cut(s)	6, 59, 71, 127, 140, 210
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	5 cut(s)	57, 69, 125, 138, 208
Fnu4HI	GCNGC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	48
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	1 cut(s)	48
GsaI	CCCAGC	1 cut(s)	146
GsuI	CTGGAG	1 cut(s)	245
HaeII	RGCGCY	1 cut(s)	256
HaeIII	GGCC	2 cut(s)	36, 331
HapII	CCGG	2 cut(s)	93, 113
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	5 cut(s)	61, 73, 129, 142, 212
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	93, 113
Hpy188III	TCNNGA	2 cut(s)	70, 79
Hpy99I	CGWCG	3 cut(s)	341, 371, 404
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	2 cut(s)	323, 400
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	50, 131, 286
HpySE526I	ACGT	1 cut(s)	190
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	5 cut(s)	61, 73, 129, 142, 212
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	122, 257
LpnPI	CCDG	9 cut(s)	18, 45, 64, 106, 121, 126, 128, 182, 209
Lsp1109I	GCAGC	1 cut(s)	34
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	124, 259
MboI	GATC	2 cut(s)	122, 257
MboII	GAAGA	3 cut(s)	58, 230, 239
MfeI	CAATTG	2 cut(s)	51, 406
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	4 cut(s)	51, 82, 231, 406
MluNI	TGGCCA	1 cut(s)	36
MnlI	CCTC	1 cut(s)	110
Mox20I	TGGCCA	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	36
MseI	TTAA	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	36
MspI	CCGG	2 cut(s)	93, 113
MspR9I	CCNGG	2 cut(s)	33, 114
MunI	CAATTG	2 cut(s)	51, 406
MvaI	CCWGG	1 cut(s)	33
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	2 cut(s)	122, 257
NlaIII	CATG	5 cut(s)	61, 73, 129, 142, 212
NmuCI	GTSAC	1 cut(s)	133
PagI	TCATGA	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 363
PdmI	GAANNNNTTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	31
PspFI	CCCAGC	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	329
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	2 cut(s)	122, 257
Sau96I	GGNCC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	33, 114
SetI	ASST	3 cut(s)	172, 193, 315
Sse9I	AATT	4 cut(s)	51, 82, 231, 406
SspI	AATATT	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	31, 112
TaaI	ACNGT	2 cut(s)	323, 400
TaiI	ACGT	1 cut(s)	193
TasI	AATT	4 cut(s)	51, 82, 231, 406
TatI	WGTACW	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	58
TspRI	CASTG	1 cut(s)	138
Van91I	CCANNNNNTGG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.