Rh7DG265500
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000493
Physical Location & Seq
Reverse (-)
28257474 .. 28258407
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG265500.1

Sequence Viewer

Length: 420 bp
ATGCCAGATCTTGATCTTGATCTCTACATGAAGACTATAGTTACAGACTTTACTCTTAAGATTTTGGGACTCGAAGATTGTGCTGACATTATGGTAGGAGACGAAATGACCAGAGGTATATCTGGTGGACAGAAAAAGAGACTCACCACAGGGGAGATGCCGGTTGGACCAGAAAGAGTGCTTGTAATGGATGAAATATCCAATGGGCTGGACAGCTCAACAACATTGCAATTAGTGAAATCACTACAACAATATGTCCACATTCTGGACGGAACTGCATTAATCGCTCTACTGCAGCCAGCACCGGAGGCGTACGATCTCTTTGATGATATAATTCTCCTCTCGGATGGCTACATCGTTTATCAGGGTCCACATGAGAATGTTCTTGAGTTCTTTGAGTACATGGGCTTCAAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

139

Amino Acids

15.54

Weight (kDa)

4.18

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 265
AfaI GTAC 2 cut(s) 314, 401
AfiI CCNNNNNNNGG 1 cut(s) 265
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 1 cut(s) 412
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
Alw26I GTCTC 2 cut(s) 93, 133
ApeKI GCWGC 1 cut(s) 295
AseI ATTAAT 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 167, 368
AsuHPI GGTGA 1 cut(s) 136
AvaII GGWCC 2 cut(s) 167, 368
BarI GAAGNNNNNNTAC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 307
BccI CCATC 1 cut(s) 341
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BcoDI GTCTC 2 cut(s) 93, 133
BfmI CTRYAG 2 cut(s) 36, 293
BfrI CTTAAG 1 cut(s) 56
BglII AGATCT 1 cut(s) 7
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme18I GGWCC 2 cut(s) 167, 368
BmgT120I GGNCC 2 cut(s) 167, 368
BmiI GGNNCC 1 cut(s) 369
BmsI GCATC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 407
BsaBI GATNNNNATC 2 cut(s) 12, 18
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse118I RCCGGY 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 224
Bse8I GATNNNNATC 2 cut(s) 12, 18
BseGI GGATG 2 cut(s) 196, 352
BseJI GATNNNNATC 2 cut(s) 12, 18
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 307
BsiSI CCGG 2 cut(s) 161, 305
BsiWI CGTACG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 2 cut(s) 93, 133
BsmBI CGTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 81
Bsp143I GATC 4 cut(s) 7, 13, 19, 316
BspLI GGNNCC 1 cut(s) 369
BspMAI CTGCAG 1 cut(s) 297
BspTI CTTAAG 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 160
BssMI GATC 4 cut(s) 7, 13, 19, 316
BstAFI CTTAAG 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 300
BstF5I GGATG 2 cut(s) 196, 352
BstKTI GATC 4 cut(s) 10, 16, 22, 319
BstMAI GTCTC 2 cut(s) 93, 133
BstMBI GATC 4 cut(s) 7, 13, 19, 316
BstMWI GCNNNNNNNGC 2 cut(s) 284, 308
BstSFI CTRYAG 2 cut(s) 36, 293
BstV1I GCAGC 1 cut(s) 307
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 7
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 1 cut(s) 7
BtsCI GGATG 2 cut(s) 196, 352
Cac8I GCNNGC 1 cut(s) 300
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 167, 368
Csp6I GTAC 2 cut(s) 313, 400
CviAII CATG 3 cut(s) 28, 374, 403
CviJI RGCY 5 cut(s) 208, 216, 298, 351, 408
CviKI_1 RGCY 5 cut(s) 208, 216, 298, 351, 408
CviQI GTAC 2 cut(s) 313, 400
DpnI GATC 4 cut(s) 9, 15, 21, 318
DpnII GATC 4 cut(s) 7, 13, 19, 316
Eco47I GGWCC 2 cut(s) 167, 368
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 3 cut(s) 31, 377, 406
FaiI YATR 8 cut(s) 29, 38, 92, 119, 255, 332, 375, 404
FaqI GGGAC 1 cut(s) 81
FatI CATG 3 cut(s) 27, 373, 402
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 2 cut(s) 203, 359
Fsp4HI GCNGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 296
HapII CCGG 2 cut(s) 161, 305
Hin1II CATG 3 cut(s) 31, 377, 406
HinfI GANTC 2 cut(s) 69, 141
HpaII CCGG 2 cut(s) 161, 305
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 3 cut(s) 128, 259, 371
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 4 cut(s) 11, 17, 266, 386
Hpy8I GTNNAC 3 cut(s) 128, 259, 371
HpyCH4V TGCA 3 cut(s) 229, 278, 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 308
Hsp92II CATG 3 cut(s) 31, 377, 406
Kzo9I GATC 4 cut(s) 7, 13, 19, 316
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 40
MalI GATC 4 cut(s) 9, 15, 21, 318
MboI GATC 4 cut(s) 7, 13, 19, 316
MboII GAAGA 2 cut(s) 43, 86
MflI RGATCY 1 cut(s) 7
MluCI AATT 2 cut(s) 230, 333
MlyI GAGTC 2 cut(s) 63, 135
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 3 cut(s) 107, 301, 350
MseI TTAA 2 cut(s) 57, 281
MslI CAYNNNNRTG 1 cut(s) 378
MspCI CTTAAG 1 cut(s) 56
MspI CCGG 2 cut(s) 161, 305
MwoI GCNNNNNNNGC 2 cut(s) 284, 308
NdeII GATC 4 cut(s) 7, 13, 19, 316
NlaIII CATG 3 cut(s) 31, 377, 406
NlaIV GGNNCC 1 cut(s) 369
Pfl23II CGTACG 1 cut(s) 312
PflMI CCANNNNNTGG 1 cut(s) 265
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 2 cut(s) 63, 135
PpsI GAGTC 2 cut(s) 63, 135
PshBI ATTAAT 1 cut(s) 281
PspLI CGTACG 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 2 cut(s) 167, 368
PstI CTGCAG 1 cut(s) 297
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 2 cut(s) 314, 401
RsaNI GTAC 2 cut(s) 313, 400
RseI CAYNNNNRTG 1 cut(s) 378
SaqAI TTAA 2 cut(s) 57, 281
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 4 cut(s) 7, 13, 19, 316
Sau96I GGNCC 2 cut(s) 167, 368
SchI GAGTC 2 cut(s) 63, 135
SetI ASST 2 cut(s) 118, 218
SfaNI GCATC 1 cut(s) 147
SfcI CTRYAG 2 cut(s) 36, 293
SinI GGWCC 2 cut(s) 167, 368
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 2 cut(s) 56, 386
SmoI CTYRAG 2 cut(s) 56, 386
Sse9I AATT 2 cut(s) 230, 333
SspI AATATT 1 cut(s) 416
TaqI TCGA 1 cut(s) 72
TasI AATT 2 cut(s) 230, 333
TatI WGTACW 1 cut(s) 399
Tru1I TTAA 2 cut(s) 57, 281
Tru9I TTAA 2 cut(s) 57, 281
TseI GCWGC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 44, 207
TspGWI ACGGA 1 cut(s) 285
Van91I CCANNNNNTGG 1 cut(s) 265
Vha464I CTTAAG 1 cut(s) 56
VpaK11BI GGWCC 2 cut(s) 167, 368
VspI ATTAAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.