Rh2DG330900

Aspartokinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
42226421 .. 42227957
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG330900.1

Sequence Viewer

Length: 240 bp
ATGGAAGTTGTGTACCAATTACTCAATGGCTTCCTATTAAACTCCACTGAGTTGTTATCTCAGAAATCTTCATCATTGAAGCTCTTTGTCCATGAACTTGACCATGTTGTGGAAGAACTGGAGAAAATTGCTGTTGTCAATCTTCTTAAGCACCGATCAATAATATCTCTCATTGGAAATGTGCAGAAATCATCACTAATATTAGAGAAGCTGTTGTACTATGTTTTGCCAAGTACTTAG

Protein Analysis

79

Amino Acids

8.98

Weight (kDa)

6.26

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 109
AfaI GTAC 3 cut(s) 14, 218, 235
AfiI CCNNNNNNNGG 1 cut(s) 109
AflII CTTAAG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 2 cut(s) 82, 211
AluI AGCT 2 cut(s) 82, 211
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BfrI CTTAAG 1 cut(s) 146
BmcAI AGTACT 1 cut(s) 235
BpmI CTGGAG 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 39, 74
BseNI ACTGG 1 cut(s) 123
BsgI GTGCAG 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 109
Bsp143I GATC 1 cut(s) 155
BspCNI CTCAG 2 cut(s) 40, 73
BspTI CTTAAG 1 cut(s) 146
BsrI ACTGG 1 cut(s) 123
BssMI GATC 1 cut(s) 155
BstAFI CTTAAG 1 cut(s) 146
BstDEI CTNAG 3 cut(s) 48, 60, 237
BstKTI GATC 1 cut(s) 158
BstMBI GATC 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 45
Csp6I GTAC 3 cut(s) 13, 217, 234
CviAII CATG 2 cut(s) 92, 104
CviJI RGCY 3 cut(s) 30, 82, 211
CviKI_1 RGCY 3 cut(s) 30, 82, 211
CviQI GTAC 3 cut(s) 13, 217, 234
DdeI CTNAG 3 cut(s) 48, 60, 237
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
FaeI CATG 2 cut(s) 95, 107
FaiI YATR 3 cut(s) 93, 105, 222
FatI CATG 2 cut(s) 91, 103
GsuI CTGGAG 1 cut(s) 140
Hin1II CATG 2 cut(s) 95, 107
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 184
HpyF3I CTNAG 3 cut(s) 48, 60, 237
Hsp92II CATG 2 cut(s) 95, 107
Kzo9I GATC 1 cut(s) 155
LpnPI CCDG 1 cut(s) 104
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 3 cut(s) 60, 125, 134
MluCI AATT 2 cut(s) 17, 126
MseI TTAA 2 cut(s) 38, 147
MspCI CTTAAG 1 cut(s) 146
NdeII GATC 1 cut(s) 155
NlaIII CATG 2 cut(s) 95, 107
PflMI CCANNNNNTGG 1 cut(s) 109
RsaI GTAC 3 cut(s) 14, 218, 235
RsaNI GTAC 3 cut(s) 13, 217, 234
SaqAI TTAA 2 cut(s) 38, 147
Sau3AI GATC 1 cut(s) 155
ScaI AGTACT 1 cut(s) 235
SetI ASST 2 cut(s) 84, 213
SgeI CNNG 4 cut(s) 104, 110, 116, 131
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 2 cut(s) 17, 126
SspI AATATT 1 cut(s) 201
TasI AATT 2 cut(s) 17, 126
TatI WGTACW 2 cut(s) 216, 233
Tru1I TTAA 2 cut(s) 38, 147
Tru9I TTAA 2 cut(s) 38, 147
TscAI CASTG 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 60, 108
TspRI CASTG 1 cut(s) 52
Van91I CCANNNNNTGG 1 cut(s) 109
Vha464I CTTAAG 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.