RchiOBHm_Chr6g0298901
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000493
Physical Location & Seq
Forward (+)
60129592 .. 60137484
7893 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26836

Sequence Viewer

Length: 3954 bp
ATGTGGAGAAACGAGGATACTTCAATGGAAGCTTTCTCCAAGTCTTCTCGTGAAGAAGACGATGAAGAATCTCTCAAATGGGCTGCTATTGAGAGACTGCCTACTTATTTACGCATAAGGAGAAGTATACTCGCTGATCAAGAGGAGGGTAAAGCCAGAGAAATTGATGTCAAGGATCTTGGATTACTAGAGAGGAAGAATTTGTTGGAGAGGTTAGTGAAGATTGCTGAGGAAGATAATGAGAAATTCTTGTTCAAGCTCAGGGACCGCATGAATAGAGTTGGACTTGAATTTCCAACAACTGAAGTGCGGTTCGAGCACTTAAATGTTGAAGCAGAAGCTTATGTAGGAAGCAGGGCATTACCTACAATGTTCAACTTCTCCATTAATATGTTAGAGGGGCTCTTGAATTGTGTTCATCTTCTTCCTAGTAGAAAGAAACCTTTGCCAATCCTACATGGTGTAAGTGGAACAATCAAGCCAAGAAGAATGACACTGCTTTTAGGCCCTCCAGGCTCTGGAAAAACCACATTGCTATTGGCATTGGCTGGAAAGCTTGGTAAAGATCTTAAAAGATCTGGAAGAGTTACCTACAATGGACTTGGGATGGATGAGTTTGTACCAGAGAGGACAGCAGCTTACATTAGTCAATATGATCTTCACATACCGGAGTTGACTGTGAGAGAAACTCTGGCCTTTTCAGCAAGATGTCAAGGGGTCGGACCACGTTATGAAATGTTAGTAGAACTACTAAGAAGAGAGAAGGCTGCAAATATTATGCCAGATTCTGATCTTGATGTCTACATGAAGGTTTTGGGACTTGAAGTTTGTGCAGACACCATGGTAGGGGATCAAATGAGACGAGGTATATCTGGTGGCCAAAGAAAGCGACTCACCACAGGGGAAATGCTTGTTGGGCCAGCAAGAGCACTTTTTATGGATGAGATATCGACTGGCCTGGACAGTTCAACAACATTTCAGATAGTAAATTCACTAAGACAATCCATTCACATTCTCAGTGGAACTGCTGTAATCTCTCTCCTGCAGCCAGCACCAGAAACTTATGATCTCTTTGATGATATAATTCTCCTCTCAGATGGGCACATTGTGTATCAAGGTCCTCGTGAAAATGTGCTCGAGTTCTTTGAGTACATGGGCTTCCGATGTCCAGAGAGGAAAGGAGTCGCTGATTTCCTCCAAGAAGTGACATCATGGAAAGACCAAGAGCAATATTGGACTGATAAAGATAAGCCTTATAGCTTTGTCACGTCCAAGGAATTTTCTGTAGCATTGCAGTCATTTCACATTGGTCAAGAACTCGGTGATGAGCTTGCTAGACCTTTTGACAAGTCTAGAGGAAACCCTGCATCTTTAACAACTGAGAAGTACGGCGTTAGCAAGAAGGAACTTTTTAAGGCTTGTCTGTCTAGACATTATTTGCTCATGAAGAGGAACTCGTTTGTCTACATTACCAGAATGACAATGTTTCTCATAACTGCTTTTGTGACAATGACACTATTCCTACGGACTGAGATGCACCGGGATACAGTAGAAGATGGTGGCATTTATATGGGAGCTATGTTCTTCACAATGATGGTAATTATGTTCAATGGATACTCAGACCTTGCTATGACTCTCATGAAACTTCCTGTGTTTTACAAGCAAAGGGACCTGCTCTTCTATCCTGCTTGGGCATACTCTTTACCAACAGTGATTATAAGAATCCCCATGACCTTTGTGGAAGTTTCCATTTGGATGGCCATCACTTACTACGGTATTGGTTATGATCCAAGCATTGGAAGGTTCTGCAAGCAGTTCCTTGTACTAGTGTGCATTAGCCAGATGGCAAACGGACTGTTCCGATTGATAGGTGCATTAGGAAGGAACATGACTGTTGCAAACACATTTGGATCTGTTGCTTTACTATGCTGTTTTGTTCTGGGTGGCTTTATGTTATCACGAGAGGAGATGAAGAACTGGTTGTTGTGGGGATATTGGCTCTCACCGATGACGTATGGAACGAATGCAATGGCTGTCAATGAGTTTTTTGGAAAAAGTTGGAGACATGTTCCACCGAACTCAACAGAATCGTTAGGAGTTATGGTCTTGAAGTCTCGAGGGGTATTCCCAGATGCAAGTTGGTACTGGATTGGAGTAGTAGCTTTATTTGGATATTTTCTTCTGTTCAACTTCCTTTACACTTTGGCACTACAGCTTCTGGAACCACTTGATAAGCCTCAGGCAGTATTGTCCAAAGAGGCTTTGGCAGTGAAACACGCCATGAAAACTGGAGAGACCATTGAGCTATCGCCAATAGGAAACAATTCTATTGGGTTACTCAAGTTTCTGTGGTGTAACAATGCAGGAGTAGGGAATGAAGTTCTAGAGAATGTGTCAGCCAATCGTCCCATGCAGCAAGGAATGATTCTTCCTTTTCAACCCCTCTCAATTACGTTTACTGAAATCAGATATGCAGTTGACATGCCACAGGAAATGAAAGGTCAAGGCATTACTGAGGATCGACTAGAACTGCTGAAGGGTGTGAGTGGTGCTTTCAGGCCTGGGGTCCTAACAGCTCTAATGGGTGTTAGCGGTGCTGGAAAGACTACTTTACTGGATGTTCTGGCAGGAAGGAAAACCGGTGGATATATTGAAGGAAACATTACCATTTCTGGGTATCCAAAAAAGCAAGAAACATTTGCTCGTATCTCAGGATATTGTGAGCAGACAGATATACACTCTCCACATGTTACGGTTTATGAGTCTTTGATTTATTCTGCATGGCTCCGCTTGTCCCCTGAAGTTGATTCCCCAACCAGAAAGATGCTCCTTCTGAAACGAGGTGGCGAAGAAATATATGTTGGCCCTTTAGGCTACCATTCTTCCTACTTGATCGGATACTTTGAGGGAATTAGTGGAGTTTCTAAAATGAAGAATGGTTACAATCCTGCAACTTGGATGTTGGAGGTTACTTCTGCAGCTCAAGAAGCAGCTCTAGGGATTAATTTCACAGACATATACAAGAATTCAGAAGCATACAGGAGAAACAAGGCCTTGGTCAAGGAACTAAGTATTCCTCCACCGAATACAAGAGACTTGTACTTCCCAACAAAATATTCTCAGTCTTTCTATACCCAGTGCAAAGCTTGCTTATGGAAGCAACATTTGTCTTACTGGAGAAACCCGGCATACAGTGCAGTTAGACTTCTTTTCACAACATTGATAGCTTTAGCAACCGGGACATTATTCTGGGGTCTTGGCTCCAGAAGGCAAAAGCAGCAAGATCTTTTTAATGCAATGGGTGCTATGTATTCTGCTATTCTCTTCATTGGGCCACAAAATACCTCAACAGTGCAGCCAGTTGTAGGCATTGAGCGAATAGTCTTTTACAGAGAAAGGGCTGCCGGAATGTACTCTGCCTTGCCATATGCCTTTGGACAGGTTGGGATTGAGCTCCCATACACTTTGATCCAAACTATCATATATGTGGTTATATCATACACGATGATCGGATTTGAGTGGACGGTCAGCAAGTTCTTTTGGCAACTATTCTTCATATACTTCAGTTACTTATACTTCACCTTATATGGCATGATGAGTGTGGCCATTACTCCCAACATTGCCGTTTCCGCTGTAGTTTCCACGGCATTCAACCCGCTATGGAACGTTTTTTCAGGATTTATCATTCCCAAATCAAGAATTCCGATATGGTGGAGATGGTTCTACTGGTCGTGCCCGGTCTCTTGGAGCTTGTACGGAATGATTGGTTCGCAGTTTGACGGCATTGAGGACAGGCTTGATTCCGGCGAAACTGTGGACGCTTTTACCAGGACTTATTTTGGGTATAGGGAAGACTTTATGAGTGTTGTTGCAATAGTGCTAGTAGCTTTTTCAGTGCTCTTTGGATCCGTCTTTGCCTTTTCAATCAAAGCCTTTAACTTTCAAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1317

Amino Acids

149.3

Weight (kDa)

8.5

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 77 - 127 1.8e-07 ABC-transporter N-terminal
ABC_tran PF00005 152 - 315 4e-17 ABC transporter
ABC2_membrane_7 PF19055 349 - 429 8.1e-06 ABC-2 type transporter
ABC2_membrane PF01061 470 - 682 4.6e-49 ABC-2 type transporter
PDR_assoc PF08370 687 - 749 2.8e-26 Plant PDR ABC transporter associated
ABC_tran PF00005 845 - 930 4.1e-10 ABC transporter
ABC2_membrane PF01061 1045 - 1259 1.6e-57 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1718
Acc36I ACCTGC 1 cut(s) 1680
AccB7I CCANNNNNTGG 2 cut(s) 518, 1796
AccI GTMKAC 3 cut(s) 127, 801, 1464
AciI CCGC 6 cut(s) 268, 310, 2592, 2788, 3630, 3656
AclI AACGTT 1 cut(s) 3666
AclWI GGATC 8 cut(s) 183, 858, 1781, 1918, 2526, 3463, 3900, 3913
AcoI YGGCCR 3 cut(s) 877, 1758, 3603
AcsI RAATTY 7 cut(s) 199, 245, 290, 988, 1277, 3025, 3699
AcuI CTGAAG 4 cut(s) 324, 2555, 2820, 3547
AdeI CACNNNGTG 1 cut(s) 1108
AfaI GTAC 8 cut(s) 621, 1151, 1388, 1824, 2144, 3101, 3413, 3755
AfiI CCNNNNNNNGG 5 cut(s) 518, 846, 1796, 2673, 3365
AflIII ACRYGT 2 cut(s) 2065, 2746
AgeI ACCGGT 1 cut(s) 2639
AhlI ACTAGT 1 cut(s) 1825
AjiI CACGTC 1 cut(s) 1269
AjnI CCWGG 4 cut(s) 511, 957, 2560, 3827
AjuI GAANNNNNNNTTGG 8 cut(s) 188, 220, 897, 929, 2844, 2876, 3100, 3132
Alw21I GWGCWC 5 cut(s) 321, 931, 1137, 3456, 3900
Alw26I GTCTC 7 cut(s) 88, 853, 2056, 2118, 2288, 3087, 3745
AlwI GGATC 8 cut(s) 183, 858, 1781, 1918, 2526, 3463, 3900, 3913
AlwNI CAGNNNCTG 3 cut(s) 518, 788, 2218
Ama87I CYCGRG 2 cut(s) 1136, 2115
ApoI RAATTY 7 cut(s) 199, 245, 290, 988, 1277, 3025, 3699
ArsI GACNNNNNNTTYG 2 cut(s) 810, 842
AseI ATTAAT 2 cut(s) 387, 3003
AsiGI ACCGGT 1 cut(s) 2639
Asp700I GAANNNNTTC 1 cut(s) 2323
AspS9I GGNCC 9 cut(s) 265, 506, 722, 917, 1118, 1669, 2566, 2864, 3332
AsuC2I CCSGG 4 cut(s) 1541, 3185, 3238, 3737
AsuHPI GGTGA 4 cut(s) 886, 1334, 1995, 3571
AvaI CYCGRG 2 cut(s) 1136, 2115
AvaII GGWCC 5 cut(s) 265, 722, 1118, 1669, 2566
AxyI CCTNAGG 1 cut(s) 2238
BaeGI GKGCMC 2 cut(s) 1104, 3737
BalI TGGCCA 3 cut(s) 879, 1760, 3605
BamHI GGATCC 1 cut(s) 3905
BanII GRGCYC 2 cut(s) 405, 3456
BarI GAAGNNNNNNTAC 4 cut(s) 1142, 1174, 2924, 2956
BauI CACGAG 3 cut(s) 48, 1122, 1959
BbsI GAAGAC 3 cut(s) 36, 63, 3858
Bbv12I GWGCWC 5 cut(s) 321, 931, 1137, 3456, 3900
BbvCI CCTCAGC 1 cut(s) 228
BccI CCATC 8 cut(s) 601, 1091, 1550, 1588, 1750, 1769, 1837, 3711
BceAI ACGGC 4 cut(s) 1405, 3608, 3660, 3796
BciT130I CCWGG 4 cut(s) 513, 959, 2562, 3829
BciVI GTATCC 5 cut(s) 10, 1537, 1607, 2688, 2891
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 4 cut(s) 1541, 3185, 3238, 3737
BcoDI GTCTC 7 cut(s) 88, 853, 2056, 2118, 2288, 3087, 3745
BcuI ACTAGT 1 cut(s) 1825
BfmI CTRYAG 5 cut(s) 1043, 1284, 2210, 2976, 3633
BfuAI ACCTGC 1 cut(s) 1680
BfuI GTATCC 5 cut(s) 10, 1537, 1607, 2688, 2891
BglI GCCNNNNNGGC 2 cut(s) 513, 2871
BglII AGATCT 3 cut(s) 565, 575, 3283
Bme1390I CCNGG 8 cut(s) 513, 959, 1541, 2562, 3185, 3238, 3737, 3829
Bme18I GGWCC 5 cut(s) 265, 722, 1118, 1669, 2566
BmeT110I CYCGRG 2 cut(s) 1136, 2115
BmgBI CACGTC 1 cut(s) 1269
BmgT120I GGNCC 9 cut(s) 265, 506, 722, 917, 1118, 1669, 2566, 2864, 3332
BmiI GGNNCC 7 cut(s) 266, 1670, 2223, 2567, 2786, 3262, 3907
BmrFI CCNGG 8 cut(s) 513, 959, 1541, 2562, 3185, 3238, 3737, 3829
BmrI ACTGGG 1 cut(s) 3130
BmsI GCATC 4 cut(s) 1376, 1524, 2122, 2814
BmuI ACTGGG 1 cut(s) 3130
BpiI GAAGAC 3 cut(s) 36, 63, 3858
BplI GAGNNNNNCTC 2 cut(s) 673, 705
BpmI CTGGAG 4 cut(s) 495, 2310, 3196, 3247
Bpu10I CCTNAGC 2 cut(s) 228, 260
BpuEI CTTGAG 2 cut(s) 2324, 2967
BpuMI CCSGG 4 cut(s) 1541, 3185, 3238, 3737
BsaBI GATNNNNATC 2 cut(s) 789, 1760
BsaI GGTCTC 2 cut(s) 2288, 3745
BsaJI CCNNGG 5 cut(s) 840, 1272, 2561, 3054, 3642
BsaWI WCCGGW 2 cut(s) 667, 2639
BsaXI ACNNNNNCTCC 2 cut(s) 2088, 2118
Bsc4I CCNNNNNNNGG 5 cut(s) 518, 846, 1796, 2673, 3365
Bse118I RCCGGY 1 cut(s) 2639
Bse1I ACTGG 9 cut(s) 958, 1982, 2150, 2293, 2619, 3136, 3179, 3359, 3731
Bse21I CCTNAGG 1 cut(s) 2238
Bse3DI GCAATG 5 cut(s) 530, 1289, 2034, 3303, 3618
Bse8I GATNNNNATC 2 cut(s) 789, 1760
BseBI CCWGG 4 cut(s) 513, 959, 2562, 3829
BseDI CCNNGG 5 cut(s) 840, 1272, 2561, 3054, 3642
BseGI GGATG 6 cut(s) 612, 616, 946, 1761, 2623, 2964
BseJI GATNNNNATC 2 cut(s) 789, 1760
BseLI CCNNNNNNNGG 5 cut(s) 518, 846, 1796, 2673, 3365
BseMI GCAATG 5 cut(s) 530, 1289, 2034, 3303, 3618
BseNI ACTGG 9 cut(s) 958, 1982, 2150, 2293, 2619, 3136, 3179, 3359, 3731
BseRI GAGGAG 3 cut(s) 158, 1079, 1979
BseSI GKGCMC 2 cut(s) 1104, 3737
BsgI GTGCAG 3 cut(s) 852, 3216, 3374
BshTI ACCGGT 1 cut(s) 2639
BsiHKAI GWGCWC 5 cut(s) 321, 931, 1137, 3456, 3900
BsiHKCI CYCGRG 2 cut(s) 1136, 2115
BsiSI CCGG 8 cut(s) 668, 1540, 2640, 3185, 3237, 3405, 3737, 3804
BslFI GGGAC 6 cut(s) 278, 831, 1682, 2391, 2779, 3253
BslI CCNNNNNNNGG 5 cut(s) 518, 846, 1796, 2673, 3365
BsmAI GTCTC 7 cut(s) 88, 853, 2056, 2118, 2288, 3087, 3745
BsmBI CGTCTC 1 cut(s) 853
BsmFI GGGAC 6 cut(s) 278, 831, 1682, 2391, 2779, 3253
BsmI GAATGC 2 cut(s) 2029, 3647
Bso31I GGTCTC 2 cut(s) 2288, 3745
BsoBI CYCGRG 2 cut(s) 1136, 2115
Bsp1286I GDGCHC 8 cut(s) 321, 405, 931, 1104, 1137, 3456, 3737, 3900
Bsp19I CCATGG 1 cut(s) 840
BspACI CCGC 6 cut(s) 268, 310, 2592, 2788, 3630, 3656
BspHI TCATGA 2 cut(s) 1443, 1638
BspLI GGNNCC 7 cut(s) 266, 1670, 2223, 2567, 2786, 3262, 3907
BspMAI CTGCAG 2 cut(s) 1047, 2980
BspMI ACCTGC 1 cut(s) 1680
BspPI GGATC 8 cut(s) 183, 858, 1781, 1918, 2526, 3463, 3900, 3913
BspQI GCTCTTC 1 cut(s) 1682
BspTNI GGTCTC 2 cut(s) 2288, 3745
BsrDI GCAATG 5 cut(s) 530, 1289, 2034, 3303, 3618
BsrFI RCCGGY 1 cut(s) 2639
BsrI ACTGG 9 cut(s) 958, 1982, 2150, 2293, 2619, 3136, 3179, 3359, 3731
BssAI RCCGGY 1 cut(s) 2639
BssECI CCNNGG 5 cut(s) 840, 1272, 2561, 3054, 3642
BssNAI GTATAC 1 cut(s) 128
BssSI CACGAG 3 cut(s) 48, 1122, 1959
BssT1I CCWWGG 3 cut(s) 840, 1272, 3054
Bst1107I GTATAC 1 cut(s) 128
Bst2BI CACGAG 3 cut(s) 48, 1122, 1959
Bst2UI CCWGG 4 cut(s) 513, 959, 2562, 3829
Bst6I CTCTTC 5 cut(s) 577, 751, 1442, 1682, 3329
BstAPI GCANNNNNTGC 3 cut(s) 3147, 3194, 3302
BstC8I GCNNGC 5 cut(s) 921, 1050, 1332, 1811, 3148
BstDSI CCRYGG 2 cut(s) 840, 3642
BstF5I GGATG 6 cut(s) 612, 616, 946, 1761, 2623, 2964
BstMAI GTCTC 7 cut(s) 88, 853, 2056, 2118, 2288, 3087, 3745
BstNI CCWGG 4 cut(s) 513, 959, 2562, 3829
BstNSI RCATGY 3 cut(s) 2069, 2485, 2750
BstSCI CCNGG 8 cut(s) 511, 957, 1539, 2560, 3183, 3236, 3735, 3827
BstSFI CTRYAG 5 cut(s) 1043, 1284, 2210, 2976, 3633
BstSLI GKGCMC 2 cut(s) 1104, 3737
BstV2I GAAGAC 3 cut(s) 36, 63, 3858
BstX2I RGATCY 6 cut(s) 175, 565, 575, 1910, 3283, 3905
BstXI CCANNNNNNTGG 1 cut(s) 1756
BstYI RGATCY 6 cut(s) 175, 565, 575, 1910, 3283, 3905
BstZ17I GTATAC 1 cut(s) 128
Bsu36I CCTNAGG 1 cut(s) 2238
BsuI GTATCC 5 cut(s) 10, 1537, 1607, 2688, 2891
BtgI CCRYGG 2 cut(s) 840, 3642
BtrI CACGTC 1 cut(s) 1269
BtsCI GGATG 6 cut(s) 612, 616, 946, 1761, 2623, 2964
BtsI GCAGTG 2 cut(s) 494, 2274
BtsIMutI CAGTG 8 cut(s) 494, 1024, 1716, 2274, 3143, 3199, 3357, 3900
BveI ACCTGC 1 cut(s) 1680
Cac8I GCNNGC 5 cut(s) 921, 1050, 1332, 1811, 3148
CaiI CAGNNNCTG 3 cut(s) 518, 788, 2218
CciI TCATGA 2 cut(s) 1443, 1638
Cfr10I RCCGGY 1 cut(s) 2639
Cfr13I GGNCC 9 cut(s) 265, 506, 722, 917, 1118, 1669, 2566, 2864, 3332
CseI GACGC 1 cut(s) 3827
Csp6I GTAC 8 cut(s) 620, 1150, 1387, 1823, 2143, 3100, 3412, 3754
CspAI ACCGGT 1 cut(s) 2639
CviQI GTAC 8 cut(s) 620, 1150, 1387, 1823, 2143, 3100, 3412, 3754
DraIII CACNNNGTG 1 cut(s) 1108
EaeI YGGCCR 3 cut(s) 877, 1758, 3603
Eam1104I CTCTTC 5 cut(s) 577, 751, 1442, 1682, 3329
EarI CTCTTC 5 cut(s) 577, 751, 1442, 1682, 3329
Ecl136II GAGCTC 1 cut(s) 3454
Eco130I CCWWGG 3 cut(s) 840, 1272, 3054
Eco147I AGGCCT 2 cut(s) 2560, 3053
Eco24I GRGCYC 2 cut(s) 405, 3456
Eco31I GGTCTC 2 cut(s) 2288, 3745
Eco32I GATATC 1 cut(s) 948
Eco47I GGWCC 5 cut(s) 265, 722, 1118, 1669, 2566
Eco53kI GAGCTC 1 cut(s) 3454
Eco57I CTGAAG 4 cut(s) 324, 2555, 2820, 3547
Eco81I CCTNAGG 1 cut(s) 2238
Eco88I CYCGRG 2 cut(s) 1136, 2115
EcoICRI GAGCTC 1 cut(s) 3454
EcoO109I RGGNCCY 4 cut(s) 506, 1118, 1669, 2566
EcoRI GAATTC 2 cut(s) 3025, 3699
EcoRII CCWGG 4 cut(s) 511, 957, 2560, 3827
EcoRV GATATC 1 cut(s) 948
EcoT14I CCWWGG 3 cut(s) 840, 1272, 3054
EcoT38I GRGCYC 2 cut(s) 405, 3456
ErhI CCWWGG 3 cut(s) 840, 1272, 3054
Esp3I CGTCTC 1 cut(s) 853
FaqI GGGAC 6 cut(s) 278, 831, 1682, 2391, 2779, 3253
FauI CCCGC 1 cut(s) 3663
FauNDI CATATG 1 cut(s) 3427
FbaI TGATCA 1 cut(s) 136
FblI GTMKAC 3 cut(s) 127, 801, 1464
FokI GGATG 6 cut(s) 619, 623, 953, 1768, 2630, 2971
FriOI GRGCYC 2 cut(s) 405, 3456
GsuI CTGGAG 4 cut(s) 495, 2310, 3196, 3247
HapII CCGG 8 cut(s) 668, 1540, 2640, 3185, 3237, 3405, 3737, 3804
HgaI GACGC 1 cut(s) 3827
HincII GTYRAC 2 cut(s) 675, 2479
HindII GTYRAC 2 cut(s) 675, 2479
HindIII AAGCTT 4 cut(s) 30, 339, 554, 3144
HpaII CCGG 8 cut(s) 668, 1540, 2640, 3185, 3237, 3405, 3737, 3804
HphI GGTGA 4 cut(s) 886, 1334, 1995, 3571
Hpy166II GTNNAC 8 cut(s) 128, 675, 802, 1465, 2457, 2479, 3522, 3817
Hpy8I GTNNAC 8 cut(s) 128, 675, 802, 1465, 2457, 2479, 3522, 3817
HpyCH4IV ACGT 5 cut(s) 727, 1268, 2012, 2453, 3666
HpySE526I ACGT 5 cut(s) 727, 1268, 2012, 2453, 3666
Ksp22I TGATCA 1 cut(s) 136
LguI GCTCTTC 1 cut(s) 1682
LmnI GCTCC 6 cut(s) 1574, 2790, 2832, 3266, 3459, 3747
LweI GCATC 4 cut(s) 1376, 1524, 2122, 2814
MaeII ACGT 5 cut(s) 727, 1268, 2012, 2453, 3666
MflI RGATCY 6 cut(s) 175, 565, 575, 1910, 3283, 3905
MhlI GDGCHC 8 cut(s) 321, 405, 931, 1104, 1137, 3456, 3737, 3900
MlsI TGGCCA 3 cut(s) 879, 1760, 3605
MluNI TGGCCA 3 cut(s) 879, 1760, 3605
MlyI GAGTC 4 cut(s) 885, 1191, 1627, 2771
MmeI TCCRAC 6 cut(s) 186, 262, 320, 700, 2039, 2943
Mox20I TGGCCA 3 cut(s) 879, 1760, 3605
MroXI GAANNNNTTC 1 cut(s) 2323
MscI TGGCCA 3 cut(s) 879, 1760, 3605
MseI TTAA 8 cut(s) 323, 387, 570, 1373, 1413, 3003, 3291, 3936
MslI CAYNNNNRTG 6 cut(s) 324, 389, 1568, 1592, 1754, 3485
Msp20I TGGCCA 3 cut(s) 879, 1760, 3605
MspA1I CMGCKG 1 cut(s) 3632
MspI CCGG 8 cut(s) 668, 1540, 2640, 3185, 3237, 3405, 3737, 3804
MspR9I CCNGG 8 cut(s) 513, 959, 1541, 2562, 3185, 3238, 3737, 3829
Mva1269I GAATGC 2 cut(s) 2029, 3647
MvaI CCWGG 4 cut(s) 513, 959, 2562, 3829
NciI CCSGG 4 cut(s) 1541, 3185, 3238, 3737
NcoI CCATGG 1 cut(s) 840
NdeI CATATG 1 cut(s) 3427
NlaIV GGNNCC 7 cut(s) 266, 1670, 2223, 2567, 2786, 3262, 3907
NmuCI GTSAC 3 cut(s) 1204, 1264, 1504
NspI RCATGY 3 cut(s) 2069, 2485, 2750
PaeR7I CTCGAG 2 cut(s) 1136, 2115
PagI TCATGA 2 cut(s) 1443, 1638
PceI AGGCCT 2 cut(s) 2560, 3053
PciI ACATGT 2 cut(s) 2065, 2746
PciSI GCTCTTC 1 cut(s) 1682
PcsI WCGNNNNNNNCGW 1 cut(s) 2018
PctI GAATGC 2 cut(s) 2029, 3647
PdmI GAANNNNTTC 1 cut(s) 2323
PfeI GAWTC 7 cut(s) 68, 785, 1722, 2087, 2425, 2807, 3800
PflMI CCANNNNNTGG 2 cut(s) 518, 1796
PinAI ACCGGT 1 cut(s) 2639
PleI GAGTC 4 cut(s) 885, 1190, 1627, 2770
PpsI GAGTC 4 cut(s) 885, 1190, 1627, 2770
PpuMI RGGWCCY 3 cut(s) 1118, 1669, 2566
PscI ACATGT 2 cut(s) 2065, 2746
PshBI ATTAAT 2 cut(s) 387, 3003
PsiI TTATAA 1 cut(s) 1718
Psp124BI GAGCTC 1 cut(s) 3456
Psp1406I AACGTT 1 cut(s) 3666
Psp5II RGGWCCY 3 cut(s) 1118, 1669, 2566
Psp6I CCWGG 4 cut(s) 511, 957, 2560, 3827
PspGI CCWGG 4 cut(s) 511, 957, 2560, 3827
PspN4I GGNNCC 7 cut(s) 266, 1670, 2223, 2567, 2786, 3262, 3907
PspPI GGNCC 9 cut(s) 265, 506, 722, 917, 1118, 1669, 2566, 2864, 3332
PspPPI RGGWCCY 3 cut(s) 1118, 1669, 2566
PspXI VCTCGAGB 1 cut(s) 1136
PstI CTGCAG 2 cut(s) 1047, 2980
PstNI CAGNNNCTG 3 cut(s) 518, 788, 2218
PsuI RGATCY 6 cut(s) 175, 565, 575, 1910, 3283, 3905
RsaI GTAC 8 cut(s) 621, 1151, 1388, 1824, 2144, 3101, 3413, 3755
RsaNI GTAC 8 cut(s) 620, 1150, 1387, 1823, 2143, 3100, 3412, 3754
RseI CAYNNNNRTG 6 cut(s) 324, 389, 1568, 1592, 1754, 3485
SacI GAGCTC 1 cut(s) 3456
SapI GCTCTTC 1 cut(s) 1682
SaqAI TTAA 8 cut(s) 323, 387, 570, 1373, 1413, 3003, 3291, 3936
Sau96I GGNCC 9 cut(s) 265, 506, 722, 917, 1118, 1669, 2566, 2864, 3332
SchI GAGTC 4 cut(s) 885, 1191, 1627, 2771
ScrFI CCNGG 8 cut(s) 513, 959, 1541, 2562, 3185, 3238, 3737, 3829
SduI GDGCHC 8 cut(s) 321, 405, 931, 1104, 1137, 3456, 3737, 3900
SfaNI GCATC 4 cut(s) 1376, 1524, 2122, 2814
SfcI CTRYAG 5 cut(s) 1043, 1284, 2210, 2976, 3633
Sfr274I CTCGAG 2 cut(s) 1136, 2115
SinI GGWCC 5 cut(s) 265, 722, 1118, 1669, 2566
SlaI CTCGAG 2 cut(s) 1136, 2115
SmiMI CAYNNNNRTG 6 cut(s) 324, 389, 1568, 1592, 1754, 3485
SmlI CTYRAG 4 cut(s) 1136, 2115, 2339, 2982
SmoI CTYRAG 4 cut(s) 1136, 2115, 2339, 2982
SpeI ACTAGT 1 cut(s) 1825
SseBI AGGCCT 2 cut(s) 2560, 3053
SsiI CCGC 6 cut(s) 268, 310, 2592, 2788, 3630, 3656
SspI AATATT 3 cut(s) 775, 1232, 3116
SstI GAGCTC 1 cut(s) 3456
StuI AGGCCT 2 cut(s) 2560, 3053
StyD4I CCNGG 8 cut(s) 511, 957, 1539, 2560, 3183, 3236, 3735, 3827
StyI CCWWGG 3 cut(s) 840, 1272, 3054
TaiI ACGT 5 cut(s) 730, 1271, 2015, 2456, 3669
TaqI TCGA 5 cut(s) 315, 950, 1137, 2116, 2521
TatI WGTACW 4 cut(s) 1149, 1822, 3099, 3411
TfiI GAWTC 7 cut(s) 68, 785, 1722, 2087, 2425, 2807, 3800
Tru1I TTAA 8 cut(s) 323, 387, 570, 1373, 1413, 3003, 3291, 3936
Tru9I TTAA 8 cut(s) 323, 387, 570, 1373, 1413, 3003, 3291, 3936
TscAI CASTG 8 cut(s) 501, 1024, 1716, 2274, 3143, 3199, 3357, 3900
TseFI GTSAC 3 cut(s) 1204, 1264, 1504
Tsp45I GTSAC 3 cut(s) 1204, 1264, 1504
TspGWI ACGGA 4 cut(s) 1540, 1866, 3771, 3898
TspRI CASTG 8 cut(s) 501, 1024, 1716, 2274, 3143, 3199, 3357, 3900
Van91I CCANNNNNTGG 2 cut(s) 518, 1796
VpaK11BI GGWCC 5 cut(s) 265, 722, 1118, 1669, 2566
VspI ATTAAT 2 cut(s) 387, 3003
XapI RAATTY 7 cut(s) 199, 245, 290, 988, 1277, 3025, 3699
XbaI TCTAGA 3 cut(s) 1352, 1427, 2383
XceI RCATGY 3 cut(s) 2069, 2485, 2750
XcmI CCANNNNNNNNNTGG 4 cut(s) 535, 1735, 2136, 2260
XhoI CTCGAG 2 cut(s) 1136, 2115
XmiI GTMKAC 3 cut(s) 127, 801, 1464
XmnI GAANNNNTTC 1 cut(s) 2323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.