RLG00000011479
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000493
Physical Location & Seq
Reverse (-)
9826239 .. 9833071
6833 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011479

Sequence Viewer

Length: 4095 bp
ATGGAGAGTAGCAGTGGAGATGTATATAGAGTGAGCAGTGCTCGTCTGAGCAGTTCAAACATTTGGAGGAACAGTACCATGGATGTTTTCTCCAAGTCTTCACACGATGAAGACGATGAAGAAGCGCTGAAATGGGCCGCCATTGAAAAACTGCCAACTTACTTGCGTATAAGGAGAGGCATTCTCACCGAGGAAGAAGGTGAAGCGAGAGAGATTGACATCAAGAATCTTGGATTGTTGGAAAGGAAGAATGTGTTGGAGAGGCTGGTGAAAGTTGCAGATGAAGATAATGAGAGGTTCTTGATGAAGCTCAAGGACCGGATTGATAGGGTTGGACTTGATATTCCAACGATTGAAGTCCGGTTTGAGCATTTGAATGTTGAAGCAGAAGCTTATGTAGGAGGGAGGGCGCTGCCTACACTCTATAACTTTTCTATTAATATCTTGGAGGGATTCCTGAGTTTCTGTCGCATTATTCCAACCAGAAAGCATCCATTACCAATCCTTGATGATGTTAGTGGAATTATCAAACCAAGAAGAATGACACTGCTTTTAGGCCCCCCAAACTCTGGAAAAACCACACTGCTTTTGGCTTTGGCTGGTAAACTTGCTAAAGATCTAAAGTATGATCTCCACATAGGGGAAATGACAGTAAGAGAAACACTGGCCTTTTCAGCAAGGTGTCAAGGGGTTGGAGGACGTTATGAAATGTTGGCAGAGTTATCAAGGAGAGAAAAAGCAGCAAATATTATGCCAGAGAAAGATCTTGATATCTACATGAAGGCTGCATCATTAGAAGGGCAGGAGGCCAATGTAGTTACAGATTACATACTCAAGATTCTGGGACTTGAAGTTTGTGCTGACACCATGGTGGGGGATGAAATGTTCCGAGGTATATCTGGCGGACAAAAGAAGCGAGTCACAACAGGGGAAATGCTCGTTGGACCAGCAAGAGCGCTTTTTATGGATGAGATATCAACTGGTTTAGACAGTTCAACAACATTTCAGATAGTGAATTCCCTCAGACAAACTATCCACATCCTCAATGGAACTGCTCTTATATCTCTTCTCCAGCCAGCACCGGAAACATATGACCTGTTTGATGACATAATTCTTCTGTCAGATGGGCAAATTGTATACCAGGGTCCCCGTGAAAATGTGCTCGAGTTCTTTGAGTATATGGGCTTCAAATGTCCAGAGAGGAAAGGAGTTGCTGACTTCCTTCAAGAAGTGACTTCAAAGAAGGATCAGGAACAGTACTGGATACAGAAAGAAGAGCCTTATAATTTTATATCTTCCAAGGAATTTGCTGAAGCATTTCAGTCATTTCATATTGGTCGAAAACTAGGTGATGATCTTGCTACTCCATTTGACAAGTCCAAAGGTCACCCTGCTGCTTTAACAACTAAGAAGTATGGTGTTAGCAAGAGGGAACTGCTCAAAGCCTGCATTGCTAGAGAATATTTGCTGATGAAGAGGAATTCGTTTGTGTACATTTTCAAGATGACCCAGCTCACTCTATTGGCCTTTATATCAATGACACTATTTTTCCGTACTAAGATGCACCGGGATACAGTTGAGGATGGTGGGATTTACATGGGTGCTATGTTCTTCACAGTCATCATAATTATGTTCAATGGGTTCTCTGAACTTGCATTGACTATCTTGAAACTTCCTGTATTTTTCAAGCAAAGAGACCTTCTGTTCTATCCAGCTTGGGCATATTCCTTACCAACATGGATCCTCAAGATTCCCATCACCTTTGTAGAAGTTGCCATTTGGGTGTTCATGACATACTATGTAATTGGTTTTGACCCAAACCCTGGAAGGTTTTTCAAGCAATATCTTTTGCTCCTATTTAACTTTCAAAACATTTTTACTGATATTTTTGTGGATGTATTTGAATTGCAGATTCCTCCTAACTCAACAGAGTCGTTGGGGATCATGGTCTTGAAGTCTCGTGGGGTTTTTGTACAAGCATATTGGTACTGGATTGGAGTAGGAGCTACAATTGGATATATATTTCTGTTCAATTTCTTCTACACTGTGGCCTTGCATTATCTTGATCCGTTTGGGAAACCTCAGGCTGTACTCTCCAAAGAAGCTTTAGCTGATAAAAACGCTGCTAGAGCTGGAGGAAACATAGAGCTATCATCAAGAGGAAAGAACTCTTCAGATGCAAAGAATGATAGTCGAAGAAGTATATCATCTAGAACACTGTCTGCTAGAGTGGGCAGCTTTAATGTAGCCAATGAAAACAGGAAGAGGGGAATGGTTCTTCCTTTTGAACCCCTTTGGATTACATTTGATGAAATCAAATATTCTGTGGACATGCCCGAGGAAATGAAAACTCAGGGAATAACTGAGGAACGGTTACCACTTCTAAAGGGCGTGACTGGTGCTTTTAGGCCTGGAGTTTTAACAGCTCTAATGGGCATAAGTGGTGCTGGAAAGACTACTCTAATGGATGTCTTGGCAGGCAGAAAAACTGGTGGATATATTGAGGGGGACATAACCATTTCTGGGTATCCAAAAAAGCAAGAAACATTTGCTCGTATATCAGGATATTGTGAGCAAACCGATATACACTCTCCTCATGTTACAGTATATGAGTCTTTGGTTTATTCTGCATGGCTTCGGTTGCCCCCTGAGGTTGATTCCGCAACTAGAAAGATGTTTGTTGAGGAAGTCATGGAGCTTGTGGAACTGACGTCGATAAGAGAGTCTCTTGTGGGATTGCCAGGAGTAAATGGTCTCTCAACCGAGCAGCGTAAAAGGCTAACCATTGCTGTAGAACTTGTTGCTAACCCTTCCATAATATTTATGGATGAGCCAACCTCTGGTCTTGATGCAAGGGCAGCAGCTATTGTAATGAGAACAGTGAGAAATACTGTGGACACAGGGCGAACTGTAGTCTGCACTATCCACCAGCCAAGCATCGACATTTTTGATGCTTTTGATGAGCTGTTTCTATTGAAAAGGGGAGGTGAAGAGATATATGTTGGCCCTCTAGGCCGACATTCTTCCCAGTTGATCAAGTATTTTGAGGAAATTGATGGGGTTCCCAAAATCAAGGATGGTTACAATCCAGCAACTTGGATGTTGGAGGTTACTTCAGCAGCACAGGAAGTAGTTCTCGGTATTAACTTTACCGATATATACAGGAGCTCAGAGCTATATAGGAGAAACAAGGACCTGATCAAGGAACTGAGTACTCCTCCGCAAGGCACAAAAGACTTGTACTTCTCTACTAAATACTCTCAGTCTTTCTACTATCAGTGTATGGCTTGTTTATGGAAACAGCATCTATCATACTGGCGAAACCCACCATACAGTGCAGTGAGACTCCTATTCACCACTTTCATAGCCTTAATGTTTGGAACAATATTCTGGGATCTTGGCTCCAAAAGGAAAAACCAACAAGATCTATTCAATGCTATGGGTTCCATGTACGCCGCCGTTCTCTTCATTGGAGTACAAAATGCCTCATCGGTGCAGCCAGTTGTGGCTATCGAGAGGACAGTCTTTTACAGAGAAAGGGCTGCTGGAATGTACTCAGCATTGCCATATGCCTTCGGACAGGTTGTGATTGAGCTTCCATACATCTTTGTCCAGACTGTCATATATGGAGTTATAGTATACGCCATGATTGGATTTGACTGGACAGTGAGCAAGTTCCTTTGGTATCTCTTCTTCATGTACTTCACTTTCTTATACTTTACATTCTATGGGATGATGACCGTGGCTGTTACACCCAACCACAACATTGCCGCAATAGTGTCCTCTGCCTTCTATGCAATATGGAACCTTTTCTCAGGATTCATTGTTCCCCGAACAAGAATGCCAATTTGGTGGAGATGGTACTATTGGATCTGCCCGGTCTCATATACATTGTATGGACTTGTTGCTTCACAGTTTGGAGACATAAAAGAAGTAATGGATTCAGGTGAAAGTGTGGAGGACTTTGTGAGGAACTACTTTGGTTACAGACACGACTTTGTGGCTATTGTTGCAGTTGTGCTTGTTGGGATTTCAGTGCTTTTCGGGTTCACCTTTGCCTTCTCGATCAAGGCATTCAACTTCCAAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1365

Amino Acids

155.02

Weight (kDa)

6.54

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 94 - 144 6.1e-07 ABC-transporter N-terminal
ABC_tran PF00005 169 - 324 1.7e-09 ABC transporter
ABC2_membrane_7 PF19055 358 - 410 9.9e-06 ABC-2 type transporter
ABC2_membrane PF01061 479 - 623 2.5e-26 ABC-2 type transporter
PDR_assoc PF08370 640 - 697 9.7e-27 Plant PDR ABC transporter associated
ABC_tran PF00005 795 - 947 5.3e-20 ABC transporter
ABC2_membrane PF01061 1092 - 1306 2.1e-64 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1284
AatII GACGTC 1 cut(s) 2714
AccB7I CCANNNNNTGG 3 cut(s) 569, 1823, 2840
AccI GTMKAC 2 cut(s) 1137, 3639
AciI CCGC 6 cut(s) 138, 903, 2661, 3221, 3456, 3771
AclWI GGATC 7 cut(s) 1254, 1735, 1748, 1949, 2060, 3402, 3878
AcsI RAATTY 3 cut(s) 1015, 1304, 1480
AcuI CTGAAG 3 cut(s) 1332, 2157, 3099
AcyI GRCGYC 1 cut(s) 2711
AfeI AGCGCT 2 cut(s) 126, 957
AfiI CCNNNNNNNGG 8 cut(s) 569, 640, 873, 1823, 2523, 2840, 3202, 3224
AjnI CCWGG 4 cut(s) 1140, 1822, 2410, 2740
AjuI GAANNNNNNNTTGG 6 cut(s) 239, 271, 924, 956, 3832, 3864
AleI CACNNNNGTG 1 cut(s) 869
AloI GAACNNNNNNTCC 4 cut(s) 869, 901, 3810, 3842
Alw21I GWGCWC 3 cut(s) 43, 1164, 3170
Alw26I GTCTC 7 cut(s) 1689, 1962, 2730, 2759, 3337, 3886, 3915
AlwI GGATC 7 cut(s) 1254, 1735, 1748, 1949, 2060, 3402, 3878
Ama87I CYCGRG 2 cut(s) 1163, 2336
Aor51HI AGCGCT 2 cut(s) 126, 957
AoxI GGCC 9 cut(s) 135, 556, 666, 807, 1524, 2049, 2408, 3004, 3013
ApoI RAATTY 3 cut(s) 1015, 1304, 1480
ArsI GACNNNNNNTTYG 2 cut(s) 837, 869
AseI ATTAAT 1 cut(s) 438
Asp700I GAANNNNTTC 3 cut(s) 1317, 3132, 3809
AspLEI GCGC 3 cut(s) 127, 412, 958
AspS9I GGNCC 7 cut(s) 135, 316, 557, 944, 1145, 3005, 3193
AsuC2I CCSGG 2 cut(s) 1568, 3878
AvaI CYCGRG 2 cut(s) 1163, 2336
AvaII GGWCC 4 cut(s) 316, 944, 1145, 3193
AxyI CCTNAGG 2 cut(s) 2082, 2649
BamHI GGATCC 1 cut(s) 1740
BanII GRGCYC 1 cut(s) 3170
BarI GAAGNNNNNNTAC 4 cut(s) 1169, 1201, 3677, 3709
BauI CACGAG 1 cut(s) 1959
BbsI GAAGAC 2 cut(s) 90, 117
Bbv12I GWGCWC 3 cut(s) 43, 1164, 3170
BccI CCATC 6 cut(s) 1118, 1577, 1763, 3050, 3071, 3852
BceAI ACGGC 1 cut(s) 3443
BciT130I CCWGG 4 cut(s) 1142, 1824, 2412, 2742
BciVI GTATCC 3 cut(s) 1257, 1564, 2538
BclI TGATCA 2 cut(s) 3033, 3198
BcnI CCSGG 2 cut(s) 1568, 3878
BcoDI GTCTC 7 cut(s) 1689, 1962, 2730, 2759, 3337, 3886, 3915
BfaI CTAG 7 cut(s) 1346, 1455, 2127, 2211, 2226, 2667, 3011
BfmI CTRYAG 2 cut(s) 2790, 2910
BfoI RGCGCY 3 cut(s) 128, 413, 959
BfuI GTATCC 3 cut(s) 1257, 1564, 2538
BglI GCCNNNNNGGC 1 cut(s) 3012
BglII AGATCT 3 cut(s) 616, 763, 3424
BmcAI AGTACT 2 cut(s) 1259, 3214
Bme1390I CCNGG 6 cut(s) 1142, 1568, 1824, 2412, 2742, 3878
Bme18I GGWCC 4 cut(s) 316, 944, 1145, 3193
BmeT110I CYCGRG 2 cut(s) 1163, 2336
BmgT120I GGNCC 7 cut(s) 135, 316, 557, 944, 1145, 3005, 3193
BmiI GGNNCC 8 cut(s) 559, 1146, 1147, 1742, 3063, 3403, 3445, 3806
BmrFI CCNGG 6 cut(s) 1142, 1568, 1824, 2412, 2742, 3878
BmrI ACTGGG 1 cut(s) 3022
BmsI GCATC 8 cut(s) 499, 797, 1551, 2167, 2839, 2941, 2946, 3313
BmuI ACTGGG 1 cut(s) 3022
BpiI GAAGAC 2 cut(s) 90, 117
BplI GAGNNNNNCTC 8 cut(s) 25, 57, 168, 200, 2822, 2854, 3202, 3234
BpmI CTGGAG 3 cut(s) 1055, 2154, 2433
BpuEI CTTGAG 3 cut(s) 296, 818, 1730
BpuMI CCSGG 2 cut(s) 1568, 3878
BsaBI GATNNNNATC 2 cut(s) 218, 1754
BsaHI GRCGYC 1 cut(s) 2711
BsaI GGTCTC 3 cut(s) 1689, 2759, 3886
BsaJI CCNNGG 9 cut(s) 78, 189, 867, 889, 1141, 1299, 1822, 2337, 3741
BsaWI WCCGGW 3 cut(s) 318, 360, 1081
BsaXI ACNNNNNCTCC 4 cut(s) 58, 88, 3621, 3651
Bsc4I CCNNNNNNNGG 8 cut(s) 569, 640, 873, 1823, 2523, 2840, 3202, 3224
Bse21I CCTNAGG 2 cut(s) 2082, 2649
Bse3DI GCAATG 4 cut(s) 1449, 2784, 3560, 3765
Bse8I GATNNNNATC 2 cut(s) 218, 1754
BseBI CCWGG 4 cut(s) 1142, 1824, 2412, 2742
BseDI CCNNGG 9 cut(s) 78, 189, 867, 889, 1141, 1299, 1822, 2337, 3741
BseJI GATNNNNATC 2 cut(s) 218, 1754
BseLI CCNNNNNNNGG 8 cut(s) 569, 640, 873, 1823, 2523, 2840, 3202, 3224
BseMI GCAATG 4 cut(s) 1449, 2784, 3560, 3765
BseRI GAGGAG 2 cut(s) 2583, 3207
BseYI CCCAGC 1 cut(s) 1509
BsgI GTGCAG 3 cut(s) 2902, 3357, 3515
BshFI GGCC 9 cut(s) 137, 558, 668, 809, 1526, 2051, 2410, 3006, 3015
BsiHKAI GWGCWC 3 cut(s) 43, 1164, 3170
BsiHKCI CYCGRG 2 cut(s) 1163, 2336
BsiSI CCGG 5 cut(s) 319, 361, 1082, 1567, 3878
BslFI GGGAC 3 cut(s) 858, 1131, 2522
BslI CCNNNNNNNGG 8 cut(s) 569, 640, 873, 1823, 2523, 2840, 3202, 3224
BsmAI GTCTC 7 cut(s) 1689, 1962, 2730, 2759, 3337, 3886, 3915
BsmFI GGGAC 3 cut(s) 858, 1131, 2522
BsmI GAATGC 3 cut(s) 180, 3846, 4073
BsnI GGCC 9 cut(s) 137, 558, 668, 809, 1526, 2051, 2410, 3006, 3015
Bso31I GGTCTC 3 cut(s) 1689, 2759, 3886
BsoBI CYCGRG 2 cut(s) 1163, 2336
Bsp1286I GDGCHC 3 cut(s) 43, 1164, 3170
Bsp1407I TGTACA 2 cut(s) 1491, 1972
Bsp19I CCATGG 2 cut(s) 78, 867
BspACI CCGC 6 cut(s) 138, 903, 2661, 3221, 3456, 3771
BspANI GGCC 9 cut(s) 137, 558, 668, 809, 1526, 2051, 2410, 3006, 3015
BspHI TCATGA 1 cut(s) 1788
BspLI GGNNCC 8 cut(s) 559, 1146, 1147, 1742, 3063, 3403, 3445, 3806
BspPI GGATC 7 cut(s) 1254, 1735, 1748, 1949, 2060, 3402, 3878
BspQI GCTCTTC 1 cut(s) 1269
BspTNI GGTCTC 3 cut(s) 1689, 2759, 3886
BsrDI GCAATG 4 cut(s) 1449, 2784, 3560, 3765
BsrGI TGTACA 2 cut(s) 1491, 1972
BssECI CCNNGG 9 cut(s) 78, 189, 867, 889, 1141, 1299, 1822, 2337, 3741
BssNAI GTATAC 2 cut(s) 1138, 3640
BssNI GRCGYC 1 cut(s) 2711
BssSI CACGAG 1 cut(s) 1959
BssT1I CCWWGG 3 cut(s) 78, 867, 1299
Bst1107I GTATAC 2 cut(s) 1138, 3640
Bst2BI CACGAG 1 cut(s) 1959
Bst2UI CCWGG 4 cut(s) 1142, 1824, 2412, 2742
Bst6I CTCTTC 8 cut(s) 1071, 1269, 1469, 2176, 2258, 2985, 3470, 3695
BstACI GRCGYC 1 cut(s) 2711
BstAUI TGTACA 2 cut(s) 1491, 1972
BstC8I GCNNGC 3 cut(s) 1077, 1447, 2479
BstDSI CCRYGG 3 cut(s) 78, 867, 3741
BstEII GGTNACC 2 cut(s) 1385, 2373
BstENI CCTNNNNNAGG 2 cut(s) 3200, 3222
BstH2I RGCGCY 3 cut(s) 128, 413, 959
BstHHI GCGC 3 cut(s) 127, 412, 958
BstMAI GTCTC 7 cut(s) 1689, 1962, 2730, 2759, 3337, 3886, 3915
BstMWI GCNNNNNNNGC 9 cut(s) 674, 1451, 2129, 2641, 2776, 2858, 3012, 3794, 4010
BstNI CCWGG 4 cut(s) 1142, 1824, 2412, 2742
BstNSI RCATGY 1 cut(s) 2335
BstPI GGTNACC 2 cut(s) 1385, 2373
BstSCI CCNGG 6 cut(s) 1140, 1566, 1822, 2410, 2740, 3876
BstSFI CTRYAG 2 cut(s) 2790, 2910
BstV2I GAAGAC 2 cut(s) 90, 117
BstX2I RGATCY 6 cut(s) 616, 763, 1740, 3394, 3424, 3870
BstXI CCANNNNNNTGG 2 cut(s) 3096, 3852
BstYI RGATCY 6 cut(s) 616, 763, 1740, 3394, 3424, 3870
BstZ17I GTATAC 2 cut(s) 1138, 3640
Bsu36I CCTNAGG 2 cut(s) 2082, 2649
BsuI GTATCC 3 cut(s) 1257, 1564, 2538
BsuRI GGCC 9 cut(s) 137, 558, 668, 809, 1526, 2051, 2410, 3006, 3015
BtgI CCRYGG 3 cut(s) 78, 867, 3741
BtsI GCAGTG 5 cut(s) 19, 43, 545, 581, 3345
Cac8I GCNNGC 3 cut(s) 1077, 1447, 2479
CciI TCATGA 1 cut(s) 1788
CfoI GCGC 3 cut(s) 127, 412, 958
Cfr13I GGNCC 7 cut(s) 135, 316, 557, 944, 1145, 3005, 3193
Eam1104I CTCTTC 8 cut(s) 1071, 1269, 1469, 2176, 2258, 2985, 3470, 3695
EarI CTCTTC 8 cut(s) 1071, 1269, 1469, 2176, 2258, 2985, 3470, 3695
EciI GGCGGA 1 cut(s) 918
Ecl136II GAGCTC 1 cut(s) 3168
Eco130I CCWWGG 3 cut(s) 78, 867, 1299
Eco147I AGGCCT 1 cut(s) 2410
Eco24I GRGCYC 1 cut(s) 3170
Eco31I GGTCTC 3 cut(s) 1689, 2759, 3886
Eco32I GATATC 2 cut(s) 772, 975
Eco47I GGWCC 4 cut(s) 316, 944, 1145, 3193
Eco47III AGCGCT 2 cut(s) 126, 957
Eco53kI GAGCTC 1 cut(s) 3168
Eco57I CTGAAG 3 cut(s) 1332, 2157, 3099
Eco81I CCTNAGG 2 cut(s) 2082, 2649
Eco88I CYCGRG 2 cut(s) 1163, 2336
Eco91I GGTNACC 2 cut(s) 1385, 2373
EcoICRI GAGCTC 1 cut(s) 3168
EcoNI CCTNNNNNAGG 2 cut(s) 3200, 3222
EcoO109I RGGNCCY 3 cut(s) 557, 1145, 3193
EcoO65I GGTNACC 2 cut(s) 1385, 2373
EcoRI GAATTC 2 cut(s) 1015, 1480
EcoRII CCWGG 4 cut(s) 1140, 1822, 2410, 2740
EcoRV GATATC 2 cut(s) 772, 975
EcoT14I CCWWGG 3 cut(s) 78, 867, 1299
EcoT38I GRGCYC 1 cut(s) 3170
ErhI CCWWGG 3 cut(s) 78, 867, 1299
FaqI GGGAC 3 cut(s) 858, 1131, 2522
FauNDI CATATG 2 cut(s) 1090, 3568
FbaI TGATCA 2 cut(s) 3033, 3198
FblI GTMKAC 2 cut(s) 1137, 3639
FriOI GRGCYC 1 cut(s) 3170
FspBI CTAG 7 cut(s) 1346, 1455, 2127, 2211, 2226, 2667, 3011
GlaI GCGC 3 cut(s) 126, 411, 957
GsaI CCCAGC 1 cut(s) 1513
GsuI CTGGAG 3 cut(s) 1055, 2154, 2433
HaeII RGCGCY 3 cut(s) 128, 413, 959
HaeIII GGCC 9 cut(s) 137, 558, 668, 809, 1526, 2051, 2410, 3006, 3015
HapII CCGG 5 cut(s) 319, 361, 1082, 1567, 3878
HhaI GCGC 3 cut(s) 127, 412, 958
Hin1I GRCGYC 1 cut(s) 2711
Hin6I GCGC 3 cut(s) 125, 410, 956
HinP1I GCGC 3 cut(s) 125, 410, 956
HindIII AAGCTT 2 cut(s) 390, 2103
HpaII CCGG 5 cut(s) 319, 361, 1082, 1567, 3878
Hpy166II GTNNAC 7 cut(s) 605, 1138, 1492, 2329, 2896, 3640, 4050
Hpy188I TCNGA 9 cut(s) 48, 890, 1008, 1025, 1123, 1648, 2176, 3172, 3578
Hpy8I GTNNAC 7 cut(s) 605, 1138, 1492, 2329, 2896, 3640, 4050
Hpy99I CGWCG 1 cut(s) 2716
HpyCH4IV ACGT 2 cut(s) 700, 2711
HpyF10VI GCNNNNNNNGC 9 cut(s) 674, 1451, 2129, 2641, 2776, 2858, 3012, 3794, 4010
HpySE526I ACGT 2 cut(s) 700, 2711
Hsp92I GRCGYC 1 cut(s) 2711
HspAI GCGC 3 cut(s) 125, 410, 956
KflI GGGWCCC 1 cut(s) 1145
Ksp22I TGATCA 2 cut(s) 3033, 3198
LguI GCTCTTC 1 cut(s) 1269
LmnI GCTCC 5 cut(s) 1857, 2003, 2695, 3165, 3407
LweI GCATC 8 cut(s) 499, 797, 1551, 2167, 2839, 2941, 2946, 3313
MaeI CTAG 7 cut(s) 1346, 1455, 2127, 2211, 2226, 2667, 3011
MaeII ACGT 2 cut(s) 700, 2711
MfeI CAATTG 1 cut(s) 2010
MflI RGATCY 6 cut(s) 616, 763, 1740, 3394, 3424, 3870
MhlI GDGCHC 3 cut(s) 43, 1164, 3170
MlyI GAGTC 5 cut(s) 927, 1940, 2621, 2732, 3339
MmeI TCCRAC 8 cut(s) 219, 237, 313, 371, 503, 673, 922, 3084
MroXI GAANNNNTTC 3 cut(s) 1317, 3132, 3809
MseI TTAA 7 cut(s) 438, 1400, 1860, 2241, 2420, 3144, 3371
MslI CAYNNNNRTG 4 cut(s) 375, 869, 1628, 1781
MspI CCGG 5 cut(s) 319, 361, 1082, 1567, 3878
MspR9I CCNGG 6 cut(s) 1142, 1568, 1824, 2412, 2742, 3878
MunI CAATTG 1 cut(s) 2010
Mva1269I GAATGC 3 cut(s) 180, 3846, 4073
MvaI CCWGG 4 cut(s) 1142, 1824, 2412, 2742
MwoI GCNNNNNNNGC 9 cut(s) 674, 1451, 2129, 2641, 2776, 2858, 3012, 3794, 4010
NciI CCSGG 2 cut(s) 1568, 3878
NcoI CCATGG 2 cut(s) 78, 867
NdeI CATATG 2 cut(s) 1090, 3568
NlaIV GGNNCC 8 cut(s) 559, 1146, 1147, 1742, 3063, 3403, 3445, 3806
NmuCI GTSAC 4 cut(s) 919, 1231, 1385, 2392
NspI RCATGY 1 cut(s) 2335
OliI CACNNNNGTG 1 cut(s) 869
PaeR7I CTCGAG 1 cut(s) 1163
PagI TCATGA 1 cut(s) 1788
PceI AGGCCT 1 cut(s) 2410
PciSI GCTCTTC 1 cut(s) 1269
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 3 cut(s) 180, 3846, 4073
PdmI GAANNNNTTC 3 cut(s) 1317, 3132, 3809
PfeI GAWTC 8 cut(s) 226, 453, 838, 1750, 1912, 2657, 3819, 3941
PflMI CCANNNNNTGG 3 cut(s) 569, 1823, 2840
PleI GAGTC 5 cut(s) 926, 1939, 2620, 2731, 3339
PpsI GAGTC 5 cut(s) 926, 1939, 2620, 2731, 3339
PpuMI RGGWCCY 2 cut(s) 1145, 3193
PshBI ATTAAT 1 cut(s) 438
PsiI TTATAA 1 cut(s) 1284
Psp124BI GAGCTC 1 cut(s) 3170
Psp5II RGGWCCY 2 cut(s) 1145, 3193
Psp6I CCWGG 4 cut(s) 1140, 1822, 2410, 2740
PspEI GGTNACC 2 cut(s) 1385, 2373
PspFI CCCAGC 1 cut(s) 1509
PspGI CCWGG 4 cut(s) 1140, 1822, 2410, 2740
PspN4I GGNNCC 8 cut(s) 559, 1146, 1147, 1742, 3063, 3403, 3445, 3806
PspPI GGNCC 7 cut(s) 135, 316, 557, 944, 1145, 3005, 3193
PspPPI RGGWCCY 2 cut(s) 1145, 3193
PspXI VCTCGAGB 1 cut(s) 1163
PsuI RGATCY 6 cut(s) 616, 763, 1740, 3394, 3424, 3870
RseI CAYNNNNRTG 4 cut(s) 375, 869, 1628, 1781
SacI GAGCTC 1 cut(s) 3170
SapI GCTCTTC 1 cut(s) 1269
SaqAI TTAA 7 cut(s) 438, 1400, 1860, 2241, 2420, 3144, 3371
Sau96I GGNCC 7 cut(s) 135, 316, 557, 944, 1145, 3005, 3193
ScaI AGTACT 2 cut(s) 1259, 3214
SchI GAGTC 5 cut(s) 927, 1940, 2621, 2732, 3339
ScrFI CCNGG 6 cut(s) 1142, 1568, 1824, 2412, 2742, 3878
SduI GDGCHC 3 cut(s) 43, 1164, 3170
SfaNI GCATC 8 cut(s) 499, 797, 1551, 2167, 2839, 2941, 2946, 3313
SfcI CTRYAG 2 cut(s) 2790, 2910
SfiI GGCCNNNNNGGCC 1 cut(s) 3012
Sfr274I CTCGAG 1 cut(s) 1163
SinI GGWCC 4 cut(s) 316, 944, 1145, 3193
SlaI CTCGAG 1 cut(s) 1163
SmiMI CAYNNNNRTG 4 cut(s) 375, 869, 1628, 1781
SmlI CTYRAG 4 cut(s) 311, 833, 1163, 1745
SmoI CTYRAG 4 cut(s) 311, 833, 1163, 1745
SseBI AGGCCT 1 cut(s) 2410
SsiI CCGC 6 cut(s) 138, 903, 2661, 3221, 3456, 3771
SspI AATATT 5 cut(s) 748, 1463, 2321, 2820, 3387
SspMI CTAG 7 cut(s) 1346, 1455, 2127, 2211, 2226, 2667, 3011
SstI GAGCTC 1 cut(s) 3170
StuI AGGCCT 1 cut(s) 2410
StyD4I CCNGG 6 cut(s) 1140, 1566, 1822, 2410, 2740, 3876
StyI CCWWGG 3 cut(s) 78, 867, 1299
TaiI ACGT 2 cut(s) 703, 2714
TaqI TCGA 7 cut(s) 1164, 1339, 2194, 2714, 2940, 3513, 4064
TatI WGTACW 9 cut(s) 1257, 1491, 1972, 2089, 3212, 3240, 3475, 3552, 3699
TauI GCSGC 3 cut(s) 140, 3458, 3773
TfiI GAWTC 8 cut(s) 226, 453, 838, 1750, 1912, 2657, 3819, 3941
Tru1I TTAA 7 cut(s) 438, 1400, 1860, 2241, 2420, 3144, 3371
Tru9I TTAA 7 cut(s) 438, 1400, 1860, 2241, 2420, 3144, 3371
TseFI GTSAC 4 cut(s) 919, 1231, 1385, 2392
Tsp45I GTSAC 4 cut(s) 919, 1231, 1385, 2392
TspGWI ACGGA 2 cut(s) 1541, 2058
Van91I CCANNNNNTGG 3 cut(s) 569, 1823, 2840
VpaK11BI GGWCC 4 cut(s) 316, 944, 1145, 3193
VspI ATTAAT 1 cut(s) 438
XagI CCTNNNNNAGG 2 cut(s) 3200, 3222
XapI RAATTY 3 cut(s) 1015, 1304, 1480
XbaI TCTAGA 1 cut(s) 2210
XceI RCATGY 1 cut(s) 2335
XcmI CCANNNNNNNNNTGG 3 cut(s) 586, 1043, 2821
XhoI CTCGAG 1 cut(s) 1163
XmiI GTMKAC 2 cut(s) 1137, 3639
XmnI GAANNNNTTC 3 cut(s) 1317, 3132, 3809
XspI CTAG 7 cut(s) 1346, 1455, 2127, 2211, 2226, 2667, 3011
ZraI GACGTC 1 cut(s) 2712
ZrmI AGTACT 2 cut(s) 1259, 3214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.