Rh6CG408900
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000493
Physical Location & Seq
Forward (+)
59444632 .. 59447582
2951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG408900.1

Sequence Viewer

Length: 717 bp
ATGGATGAGATATCCACTGGCTTGGACAGTTCAACAACATTGCAGATAGTGAAGTCACTTAGACAATCCATCCACATTCTCAATGGAACTGCTGTCATCTCTCTCCTCCAGCCAGCGCCAGAAACTTATGATCTTTTCGATGATATAATTCTACTCTCAGATGGGCACATTGTGTATCAAGGTCCCCGGGACAATGTGCTTGAGTTCTTTGAGTACATGGGCTTTAAATGTCCAGAGAGAAAAGGAGTTGCTGATTTTCTACAAGAAGTAACCTCAGGGAAAGATCAAGAGCAATACTGGGCTGATAAAGATAAGCCTTATAGCTTTGTAACTTCCAAGAACTTTGCTGAAGCCTTGCAATCATTTTACATTGGTCGAGAACTTGGTGATGAGCTTTCTATTCCGTTTGACAAGTCTAAAGGTCATCCTGCAGCTTTAACAACCAAGAAGTACGGCGTCAGCAAGAAGGAATTATTCAAAGCTTGTATGTCTAGGCAAATTTTGCTTATGAAGAGGAATTCATTTATCCACATTTTCAAAATTTCACAGTTCCTTTCACTGCTGTTTATTAGCCAGATGGCAACTGGACTGTTCCGACTGATAGGGGCATTAGGAAGAAACATGATTGTTGCAAACACATTTGGATCGGTTGCTTTGCTTGTGCTGTTTATTCTTGGTGGATTCCTTTTATCACGAGGTGAATCATACTTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

238

Amino Acids

26.72

Weight (kDa)

6.44

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane_7 PF19055 37 - 95 2.9e-07 ABC-2 type transporter
ABC2_membrane PF01061 181 - 232 1.8e-06 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 652
AcsI RAATTY 3 cut(s) 498, 517, 540
AcuI CTGAAG 1 cut(s) 369
AcyI GRCGYC 1 cut(s) 456
AdeI CACNNNGTG 2 cut(s) 172, 698
AfaI GTAC 2 cut(s) 215, 452
AgsI TTSAA 3 cut(s) 33, 478, 538
AluBI AGCT 4 cut(s) 324, 394, 434, 482
AluI AGCT 4 cut(s) 324, 394, 434, 482
AlwI GGATC 1 cut(s) 652
Ama87I CYCGRG 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 3 cut(s) 498, 517, 540
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 2 cut(s) 187, 188
AsuHPI GGTGA 2 cut(s) 398, 710
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 182
AxyI CCTNAGG 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 168
BauI CACGAG 1 cut(s) 693
BbvI GCAGC 1 cut(s) 443
BccI CCATC 3 cut(s) 77, 155, 571
BceAI ACGGC 1 cut(s) 469
BcnI CCSGG 2 cut(s) 187, 188
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 1 cut(s) 429
BfoI RGCGCY 1 cut(s) 119
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
Bme1390I CCNGG 2 cut(s) 187, 188
Bme18I GGWCC 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 2 cut(s) 187, 188
BmrI ACTGGG 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 2 cut(s) 187, 188
BsaHI GRCGYC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 185, 186
Bse1I ACTGG 3 cut(s) 22, 302, 589
Bse21I CCTNAGG 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 185, 186
BseGI GGATG 3 cut(s) 10, 69, 424
BseMI GCAATG 1 cut(s) 38
BseMII CTCAG 2 cut(s) 171, 288
BseNI ACTGG 3 cut(s) 22, 302, 589
BseRI GAGGAG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 2 cut(s) 168, 203
BsmFI GGGAC 2 cut(s) 168, 203
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 3 cut(s) 130, 283, 644
BspCNI CTCAG 2 cut(s) 170, 287
BspLI GGNNCC 1 cut(s) 184
BspMAI CTGCAG 1 cut(s) 433
BspPI GGATC 1 cut(s) 652
BsrDI GCAATG 1 cut(s) 38
BsrI ACTGG 3 cut(s) 22, 302, 589
BssECI CCNNGG 2 cut(s) 185, 186
BssMI GATC 3 cut(s) 130, 283, 644
BssNI GRCGYC 1 cut(s) 456
BssSI CACGAG 1 cut(s) 693
Bst2BI CACGAG 1 cut(s) 693
Bst4CI ACNGT 3 cut(s) 29, 549, 591
Bst6I CTCTTC 1 cut(s) 506
BstACI GRCGYC 1 cut(s) 456
BstAPI GCANNNNNTGC 1 cut(s) 502
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 3 cut(s) 59, 157, 274
BstF5I GGATG 3 cut(s) 10, 69, 424
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 3 cut(s) 133, 286, 647
BstMBI GATC 3 cut(s) 130, 283, 644
BstMWI GCNNNNNNNGC 1 cut(s) 502
BstSCI CCNGG 2 cut(s) 185, 186
BstSFI CTRYAG 1 cut(s) 429
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 443
BstXI CCANNNNNNTGG 1 cut(s) 22
Bsu36I CCTNAGG 1 cut(s) 274
BtsCI GGATG 3 cut(s) 10, 69, 424
BtsI GCAGTG 1 cut(s) 557
BtsIMutI CAGTG 2 cut(s) 15, 557
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 182
Cfr9I CCCGGG 1 cut(s) 186
CseI GACGC 1 cut(s) 445
Csp6I GTAC 2 cut(s) 214, 451
CviAII CATG 2 cut(s) 217, 622
CviQI GTAC 2 cut(s) 214, 451
DdeI CTNAG 3 cut(s) 59, 157, 274
DpnI GATC 3 cut(s) 132, 285, 646
DpnII GATC 3 cut(s) 130, 283, 644
DraI TTTAAA 1 cut(s) 226
DraIII CACNNNGTG 2 cut(s) 172, 698
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
Eco32I GATATC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 369
Eco81I CCTNAGG 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 186
EcoO109I RGGNCCY 1 cut(s) 182
EcoRI GAATTC 1 cut(s) 517
EcoRV GATATC 1 cut(s) 12
FaeI CATG 2 cut(s) 220, 625
FaiI YATR 8 cut(s) 129, 146, 218, 321, 488, 509, 623, 706
FaqI GGGAC 2 cut(s) 168, 203
FatI CATG 2 cut(s) 216, 621
Fnu4HI GCNGC 1 cut(s) 432
FokI GGATG 3 cut(s) 17, 56, 411
Fsp4HI GCNGC 1 cut(s) 432
FspBI CTAG 1 cut(s) 492
GlaI GCGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 92
HaeII RGCGCY 1 cut(s) 119
HapII CCGG 1 cut(s) 187
HgaI GACGC 1 cut(s) 445
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 456
Hin1II CATG 2 cut(s) 220, 625
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HindIII AAGCTT 1 cut(s) 480
HinfI GANTC 2 cut(s) 681, 701
HpaII CCGG 1 cut(s) 187
HphI GGTGA 2 cut(s) 398, 710
Hpy188I TCNGA 2 cut(s) 160, 596
Hpy188III TCNNGA 4 cut(s) 233, 287, 377, 693
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 3 cut(s) 29, 549, 591
HpyCH4V TGCA 4 cut(s) 43, 358, 431, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 502
HpyF3I CTNAG 3 cut(s) 59, 157, 274
Hsp92I GRCGYC 1 cut(s) 456
Hsp92II CATG 2 cut(s) 220, 625
HspAI GCGC 1 cut(s) 116
Kzo9I GATC 3 cut(s) 130, 283, 644
Lsp1109I GCAGC 1 cut(s) 443
MaeI CTAG 1 cut(s) 492
MaeIII GTNAC 3 cut(s) 54, 268, 328
MalI GATC 3 cut(s) 132, 285, 646
MboI GATC 3 cut(s) 130, 283, 644
MboII GAAGA 2 cut(s) 523, 627
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 5 cut(s) 147, 470, 498, 517, 540
MmeI TCCRAC 1 cut(s) 619
MnlI CCTC 4 cut(s) 116, 283, 507, 689
MseI TTAA 2 cut(s) 225, 437
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 2 cut(s) 187, 188
MwoI GCNNNNNNNGC 1 cut(s) 502
NciI CCSGG 2 cut(s) 187, 188
NdeII GATC 3 cut(s) 130, 283, 644
NlaIII CATG 2 cut(s) 220, 625
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 681, 701
PkrI GCNGC 1 cut(s) 433
PpuMI RGGWCCY 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 182
PspPPI RGGWCCY 1 cut(s) 182
PstI CTGCAG 1 cut(s) 433
RsaI GTAC 2 cut(s) 215, 452
RsaNI GTAC 2 cut(s) 214, 451
SaqAI TTAA 2 cut(s) 225, 437
SatI GCNGC 1 cut(s) 432
Sau3AI GATC 3 cut(s) 130, 283, 644
Sau96I GGNCC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 187, 188
SduI GDGCHC 1 cut(s) 168
SetI ASST 8 cut(s) 184, 275, 326, 396, 424, 436, 484, 700
SfcI CTRYAG 1 cut(s) 429
SinI GGWCC 1 cut(s) 182
SmaI CCCGGG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 5 cut(s) 147, 470, 498, 517, 540
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 2 cut(s) 185, 186
TaaI ACNGT 3 cut(s) 29, 549, 591
TaqI TCGA 2 cut(s) 138, 376
TasI AATT 5 cut(s) 147, 470, 498, 517, 540
TatI WGTACW 1 cut(s) 213
TfiI GAWTC 2 cut(s) 681, 701
Tru1I TTAA 2 cut(s) 225, 437
Tru9I TTAA 2 cut(s) 225, 437
TscAI CASTG 2 cut(s) 22, 564
TseFI GTSAC 1 cut(s) 54
TseI GCWGC 1 cut(s) 431
Tsp45I GTSAC 1 cut(s) 54
TspDTI ATGAA 2 cut(s) 510, 524
TspGWI ACGGA 1 cut(s) 393
TspMI CCCGGG 1 cut(s) 186
TspRI CASTG 2 cut(s) 22, 564
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 3 cut(s) 498, 517, 540
XcmI CCANNNNNNNNNTGG 2 cut(s) 80, 581
XmaI CCCGGG 1 cut(s) 186
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.