Rroxscaffold_3G00247810
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000493
Physical Location & Seq
Forward (+)
41197257 .. 41198147
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247810.1

Sequence Viewer

Length: 645 bp
ATGGCTCTTTTAAACTTTTTTCAGGCAAGAGCACTAGAAGGACTGGAAGCTAATATAGTGACAGACTTTATTCTTAAGATTTTGGGACTCGAAGATTGTGCTTACATTATGGTAGGAGACGAAATGACCAGAGGTATATCTGGTGGACAGAAACAGAGACTCACCACAGGGGAGATGCTGGTTGGAGCAGAAAGAGTGCTTCTAATGGATGAAGTATCCAATAGGCTGGACAGCTCAACAACATTGCAATTAGTGAAATCACTACAACAATATGTCCACATTCTGAACGGAACTGCATTAATCGCTCTACTGCAGCCAGCACCGGAGGTGTACGATCTCTTTGATGATATAATTCTCCTCTCGGATGGCTACATCGTTTATCAGGGTCCACGTGAGAATGTTCTTATGTTCTTTGAGTACATGGGCTTCAAATGTCCAGAGAGGAAAGGAGTTGCCGATTTCCTGCAAGAGGTGGCTCAACTTACTCACACACGCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATATACATATATCCCTCCCTCTATGTCAACCTTTTGTTTTCCACATAGATTGGATATATATAAATACAGTTTCTCATTTATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

214

Amino Acids

24.31

Weight (kDa)

5.83

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane_7 PF19055 105 - 160 1.3e-06 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 392
AfaI GTAC 2 cut(s) 332, 419
AfiI CCNNNNNNNGG 1 cut(s) 469
AflII CTTAAG 1 cut(s) 74
AgsI TTSAA 1 cut(s) 430
AluBI AGCT 2 cut(s) 50, 234
AluI AGCT 2 cut(s) 50, 234
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 2 cut(s) 111, 151
ApeKI GCWGC 1 cut(s) 313
AseI ATTAAT 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 386
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
BbrPI CACGTG 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 325
BccI CCATC 1 cut(s) 359
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciVI GTATCC 1 cut(s) 226
BcoDI GTCTC 2 cut(s) 111, 151
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 311
BfrI CTTAAG 1 cut(s) 74
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 1 cut(s) 387
BmsI GCATC 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 392
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse1I ACTGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 242
BseGI GGATG 2 cut(s) 214, 370
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMI GCAATG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 2 cut(s) 111, 151
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 387
BspMAI CTGCAG 1 cut(s) 315
BspTI CTTAAG 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 242
BsrI ACTGG 1 cut(s) 48
BssMI GATC 1 cut(s) 334
Bst4CI ACNGT 1 cut(s) 628
BstAFI CTTAAG 1 cut(s) 74
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 318
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 2 cut(s) 214, 370
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 2 cut(s) 111, 151
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstSFI CTRYAG 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 325
BstXI CCANNNNNNTGG 1 cut(s) 226
BsuI GTATCC 1 cut(s) 226
BtsCI GGATG 2 cut(s) 214, 370
Cac8I GCNNGC 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 386
Csp6I GTAC 2 cut(s) 331, 418
CspCI CAANNNNNGTGG 2 cut(s) 590, 625
CviAII CATG 1 cut(s) 421
CviJI RGCY 8 cut(s) 5, 50, 226, 234, 316, 369, 426, 476
CviKI_1 RGCY 8 cut(s) 5, 50, 226, 234, 316, 369, 426, 476
CviQI GTAC 2 cut(s) 331, 418
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DraI TTTAAA 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 386
Eco72I CACGTG 1 cut(s) 392
EcoNI CCTNNNNNAGG 1 cut(s) 467
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 1 cut(s) 424
FaqI GGGAC 1 cut(s) 99
FatI CATG 1 cut(s) 420
Fnu4HI GCNGC 1 cut(s) 314
FokI GGATG 2 cut(s) 221, 377
Fsp4HI GCNGC 1 cut(s) 314
FspBI CTAG 1 cut(s) 35
GluI GCNGC 1 cut(s) 314
HapII CCGG 1 cut(s) 323
Hin1II CATG 1 cut(s) 424
HincII GTYRAC 1 cut(s) 587
HindII GTYRAC 1 cut(s) 587
HinfI GANTC 2 cut(s) 87, 159
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 5 cut(s) 146, 277, 331, 389, 587
Hpy188I TCNGA 2 cut(s) 285, 364
Hpy188III TCNNGA 1 cut(s) 437
Hpy8I GTNNAC 5 cut(s) 146, 277, 331, 389, 587
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 4 cut(s) 247, 296, 313, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 1 cut(s) 424
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 185
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 1 cut(s) 58
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 34
MluCI AATT 2 cut(s) 248, 351
MlyI GAGTC 2 cut(s) 81, 153
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 7 cut(s) 125, 319, 368, 435, 463, 584, 588
MseI TTAA 4 cut(s) 11, 75, 299, 643
MspCI CTTAAG 1 cut(s) 74
MspI CCGG 1 cut(s) 323
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeII GATC 1 cut(s) 334
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 1 cut(s) 387
NmuCI GTSAC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 315
PleI GAGTC 2 cut(s) 81, 153
PmaCI CACGTG 1 cut(s) 392
PmlI CACGTG 1 cut(s) 392
PpsI GAGTC 2 cut(s) 81, 153
Ppu21I YACGTR 1 cut(s) 392
PshBI ATTAAT 1 cut(s) 299
PspCI CACGTG 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 387
PspPI GGNCC 1 cut(s) 386
PstI CTGCAG 1 cut(s) 315
RsaI GTAC 2 cut(s) 332, 419
RsaNI GTAC 2 cut(s) 331, 418
SaqAI TTAA 4 cut(s) 11, 75, 299, 643
SatI GCNGC 1 cut(s) 314
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 1 cut(s) 386
SchI GAGTC 2 cut(s) 81, 153
SduI GDGCHC 1 cut(s) 34
SetI ASST 7 cut(s) 52, 136, 236, 330, 394, 474, 592
SfaNI GCATC 1 cut(s) 165
SfcI CTRYAG 1 cut(s) 311
SinI GGWCC 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 2 cut(s) 248, 351
SspMI CTAG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 628
TaiI ACGT 1 cut(s) 394
TaqI TCGA 1 cut(s) 90
TasI AATT 2 cut(s) 248, 351
TatI WGTACW 1 cut(s) 417
Tru1I TTAA 4 cut(s) 11, 75, 299, 643
Tru9I TTAA 4 cut(s) 11, 75, 299, 643
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 225
TspGWI ACGGA 1 cut(s) 303
Vha464I CTTAAG 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 386
VspI ATTAAT 1 cut(s) 299
XagI CCTNNNNNAGG 1 cut(s) 467
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.