RchiOBHm_Chr7g0201801
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000493
Physical Location & Seq
Reverse (-)
19418207 .. 19425366
7160 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18063

Sequence Viewer

Length: 4197 bp
ATGACGACATGGGGTGCCATTGAGAGACTGCCTACGTATTCACGCACAAGGAGAGGCATTCTACTCGGTCAAGGTCAAGAGGAGGACGGTGAAAGCAGAGAGATTGATATAAAGAAGAATCTTGGACTACCAGAGAGGAAGACTTTGTTGGAGAGGCTAGTGAAGATTGTTGAGCAAGACAATGACAAGTTCTTGCTCAAGATCAAGGACCGCATGAATAGAGTTGGACTTGAATTTCCAACAACTGAAGTGCGGTTCGAGAATTTAAATGTTGAAGCAGAAGCTTATGTAGGAAGCAGGGCATCATCTACAATGTTCAACTTCTCTATTAATATGTTAGAGGGGTTCCTGAATTATTTTCACATTCTTCCAAGTAGAAAGAGACCATTTACAATCCTCCATGATGTAAGAGGGATTATCAAGCCAAGAAGAATGACACTTCTTTTAGGCCCCCCTGGCTCTGGAAAGACGACGTTACTATTGGCCTTGGCTGGAAAACTCGTTACATACAATGGAATTGAGATGGATGAGTTTGTATCAGAGAGGACATCAGCTTATGTCAGTCAACATGATCTCCACATACCAGAATTGACAGTGAGAGAAACACTGGCTTTTGCAGCTAGATGTCAAGGTGTTGGACCGCGTTATGAAATGTTGGTGGAATTATTAAGGAGAGAAAAGGCTGCAAATATTATGCCAGATCTTGATCTTGATCTCTACATGAAGGCAGCAGCACTAGAAGGACAGGAAACTAATATTGTTACAGACTTTATTCTCAAGGTTTTGGGACTCGAAGATTGTGCTGACATTATGGTAGGAGATGAAATGACCAGAGGTATCTCTGGTGGACAAAAAAAGCGACTCACCACAGGGGAGATGCTGGTTGGACCAGAAAGAGTACTTCTTATGGATGAGATATCAAACGGGCTGGACAGTTCAACAACATTGCAAATAGTGAAATCACTACAACAATACGTCCACATTCTCAACGGAACTGCATTGATTGCTCTACTGCAGCCAGCACCAGAGACTTATGATCTCTTCGATGATATAATTCTCCTTTCGGATGGCTACATTGTGTATCAAGGTCCCCGTGAGAATGTTCTTGAGTTCTTTGAGTACATGGGCTTCAAATGTCCAGAGAGGAAAGGAGTTGCTGATTTCCTACAAGAGGTGACATCAAGAAAAGATCAAGAGCAATACTGGGCTCATATGGATAGGCCTTATAGCTTTGTAACAACCAAAGAATTTTCTGAAGCAATGCAGTTATTTCACATTGGTAGAAAACTTGGTGATGAGCTTTCTATTCCATTTAACAAGTCAGAAGGCTGCCGTGCTGCTTTGTCAACTAAAAAATATGGTGTTAGTAAGAAGGAAATGTTCAAAGCTTGTATGGCCAGACAAATTTTGCTTACAAAGAGGAATTCATTTGTCTACATTTTCAAATTGGTGCAGCTTATTCTAGTTGCTGTTACAACAATGACACTATTTTTTCGTACTGAGATGGAGCGAAACACAGTAGAAGATGGTAGGATTTATACGGGAGCTTTATTCTATACGCTACTCGCAATTATGCTTAATGGGTTTGCAGAGCTTCATATGACAGTCACTAGACTGCCTGTGTTTTTCAAGCAAAGGGACCATCTGTTCTATCCTGCTTGGGCATACTCTTTACCCCCATGGCTGATAAGGATCCCTATAACTTTTGTGGACGTTTTCATCTGGATGATCATTACTTACTACAGTGTAGGTTATGATCCGAGCATTGCAAGATTTTTCAAACAATTCCTTCTCCTGCTGTGTATTAGCCAGATGGCAAATGGACTGTTTCGATTGATAGGGGCACTAGGGAGGAATATAACTATTGCAAATACATTTGGATTTGGTACTTTACTTGTCATTCTTGGTCTGTGTGGCTTTATCATTTCAAAAGAGGATTTGAAGAAATGGTTGTTGTGGGGATATTGGCTCTCACCAATCACGTATGGACTGAATGCCATCGCTGTTAATGAATTTCTTGGAAAAAGTTGGAGACATGTTCCTGCCAACTCAACAGAAGCATTAGGAGTTATGGTCTTGAAGTATCAAGGCATACCCCCAGAGGCACGCTTCTACTGGATTGGATTAGTAGCTTTGATTGGATTTATTCTTCTGTTGAATTTCCTTTTCACCTTGGCACTTCAGTATCTTGATCGTAAGTGCCTAGGCATATTATCTTCTGTTTACACATGGACACTAGCATTGTTATGTTTTGACAATCCTAACAATTTCCTGGATGCAGCACTTGAGATGCCCAATGCAGTACTATACAATGAGGCATCCTCTACAACAGAGGATAGCAAAGTTGCAAGCGATCCTACTATACAGCATGGCATGGTTCTTCCATTTGAACCCCTTTCAATTACTTTCGAGGAAATCAGATATGCTGTCGATATGCCTGAGGAAATGAAAGATCAAAGCAAAACTCAGGATAGGCTAGAACTTCTGAAGGGTGTGAGTGGTGCTTTTAGGCCTGGAGTTCTAACAGCTTTGATGGGTGTTAGTGGTGCTGGAAAAACCACTCTCATGGATGTCTTGGCAGGAAGGAAGACAAGTGGGTATATTGAGGGGAGGATCACCTTATCTGGATATGCAAAAAGGCAAGAAACATTTGCTCGCATATCAGGATACTGTGAACAAACAGATATACACTCCCCTCATGTTACAGTTTACGAGTCTTTGGTTTACTCTGCATGGCTCCGGTTGCCCCAGGAGGTTGATTCCCCAACCAGAAAGATGTTTATTGAGGAGGTTATGGAGCTTGTAGAAATGACCTCAATAAGTGACAGACTTGTTGGATTGCCAGGAGTGAATGGTCTCTCAACTGAACAACGCAAAAGGCTAACAATTGCAGTAGAGCTTGTTGCCAACCCCTCGATAATATTTATGGATGAGCCGACTTCTGGCCTTGATGCTAGGGCAGCAGCAATTGTAATGAGAACGGTGAGGAATACAGTGGACACTGGGAGAACTGTAGTCTGTACAATCCACCAACCAAGCATTGATATATTTGATGCATTTGATGAGATGTTGCTTCTGAAACAGGGAGGCGAAGAAATATATGTTGGCCCTTTAGGCCACCATTCTTCCCAGATGATCGAATACTTTGAGGAGATTAGTGGAGTTTCTAAAATCAAGGATGGTTACAATCCAGCAACCTGGATGTTGGAGGTTACTTCTCCAGCACAAGAAGCATCTCTTGGGGTTGATTTTGCCAAAATATACAAGAATTCAGAAATATATAGGACAAATAAGGCATTGATAAAGGAACTAAGTACTCCTGCACCAAATTCAAAGGACTTGTACTTCCCAACACAATATTCGCAGTCTTTCTTTACCCAGTGTCTAGCTTGCCTATGGAAACAGAGTGTATCATATTGGCGAAACCCTCAATACACCGCAGTAAGACTTCTTTTCACAGCTATGATGGCCGGACTACTTGGGTCATTTTTCTGGGATCTTGGCTCCAAAAGACAAAAGCAAAGAGATCTCTTTTGTGCGATGGGTTCTATGTATGCTGCTGTGCTTTTTCTTGGTATACAAAATTCCTTGTCAGTGCAGCCAATCATAGGTGTTGAGAGGTTGGTCTCTTACAGAGAAACGGCTGCTGGAATGTACTCAGCTTTTCCATTTGCCTTTGGACAGGCTATCATTGAGATCCCGTACACTTTGATCCAGACTATTATATATGGGGTCATAGTATACTCCATGGTCGGATTTGATTGGACAGTCAGCAAGTTCTTTTGTTATCTCTTGTTCATGTACCTCACCTTCTTATACTTCACCTTCCATGGCATGATGATTGTGGCCATTACTCCCAACAACACCATCTCTGCTGTAGTTTCGTCTGCCTTCTATCCATTATGGAATGTTATTTCAGGATATCTCATTCCCAAAACAAGAATTCCAATATGGTGGAGATGGTTCTATTGGGTCAGCCCAACCTCTTGGAGCTTGTATGGATTGTTTTCTTCACAGTTTGGAGGTCTCAAGGACACACTTGATTCTGGTGAAACTGTAGATCATTTTATGAGGACATATTTTGGATATAGGAAAGACTTTCTAGGTGTTGTTGTAGCTGTACTTGTTGGGTTTTCAGCGTTCTTTGTTTTCATCTTTGCTTTTGCGATCAAGAAACTAAACTTCCAAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1398

Amino Acids

158.53

Weight (kDa)

6.58

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 58 - 108 2e-06 ABC-transporter N-terminal
ABC_tran PF00005 133 - 306 2.8e-15 ABC transporter
ABC2_membrane PF01061 461 - 672 3.8e-47 ABC-2 type transporter
PDR_assoc PF08370 677 - 731 1.3e-18 Plant PDR ABC transporter associated
ABC_tran PF00005 829 - 981 6.1e-21 ABC transporter
ABC2_membrane PF01061 1126 - 1340 4.3e-53 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccI GTMKAC 3 cut(s) 1434, 3577, 3741
AccII CGCG 1 cut(s) 643
AciI CCGC 4 cut(s) 211, 253, 641, 3438
AclWI GGATC 8 cut(s) 1687, 1700, 1751, 2348, 2621, 3504, 3691, 3706
AcoI YGGCCR 3 cut(s) 1395, 3468, 3846
AcuI CTGAAG 4 cut(s) 267, 1275, 2165, 2507
AfiI CCNNNNNNNGG 4 cut(s) 461, 1171, 2942, 3608
AflIII ACRYGT 1 cut(s) 2035
AjnI CCWGG 6 cut(s) 454, 2271, 2512, 2748, 2842, 3197
AjuI GAANNNNNNNTTGG 8 cut(s) 131, 163, 3087, 3119, 3222, 3254, 3343, 3375
AloI GAACNNNNNNTCC 2 cut(s) 1631, 1663
Alw26I GTCTC 7 cut(s) 19, 376, 1022, 2026, 2861, 3631, 4031
AlwI GGATC 8 cut(s) 1687, 1700, 1751, 2348, 2621, 3504, 3691, 3706
AseI ATTAAT 1 cut(s) 330
AspA2I CCTAGG 1 cut(s) 2203
AspS9I GGNCC 7 cut(s) 208, 449, 638, 887, 1088, 1639, 3107
AvaII GGWCC 5 cut(s) 208, 638, 887, 1088, 1639
AvrII CCTAGG 1 cut(s) 2203
AxyI CCTNAGG 1 cut(s) 2439
BaeGI GKGCMC 1 cut(s) 1846
BaeI ACNNNNGTAYC 2 cut(s) 2168, 2201
BalI TGGCCA 2 cut(s) 1397, 3848
BamHI GGATCC 1 cut(s) 1692
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 1210
BarI GAAGNNNNNNTAC 4 cut(s) 1112, 1144, 3794, 3826
BbsI GAAGAC 2 cut(s) 146, 2594
BceAI ACGGC 2 cut(s) 1317, 3657
BcgI CGANNNNNNTGC 4 cut(s) 46, 80, 782, 816
BciT130I CCWGG 6 cut(s) 456, 2273, 2514, 2750, 2844, 3199
BciVI GTATCC 1 cut(s) 2660
BclI TGATCA 1 cut(s) 1728
BcoDI GTCTC 7 cut(s) 19, 376, 1022, 2026, 2861, 3631, 4031
BfmI CTRYAG 5 cut(s) 1013, 1741, 3012, 3876, 4056
BfuI GTATCC 1 cut(s) 2660
BglI GCCNNNNNGGC 2 cut(s) 456, 3114
BglII AGATCT 2 cut(s) 700, 3526
BlnI CCTAGG 1 cut(s) 2203
BmcAI AGTACT 3 cut(s) 900, 2304, 3316
Bme1390I CCNGG 6 cut(s) 456, 2273, 2514, 2750, 2844, 3199
Bme18I GGWCC 5 cut(s) 208, 638, 887, 1088, 1639
BmgT120I GGNCC 7 cut(s) 208, 449, 638, 887, 1088, 1639, 3107
BmiI GGNNCC 8 cut(s) 16, 347, 451, 1090, 1640, 1694, 2738, 3505
BmrFI CCNGG 6 cut(s) 456, 2273, 2514, 2750, 2844, 3199
BmrI ACTGGG 3 cut(s) 1213, 3012, 3373
BmsI GCATC 8 cut(s) 311, 867, 2266, 2280, 2327, 2941, 3043, 3242
BmuI ACTGGG 3 cut(s) 1213, 3012, 3373
BpiI GAAGAC 2 cut(s) 146, 2594
BplI GAGNNNNNCTC 2 cut(s) 2306, 2338
BpmI CTGGAG 2 cut(s) 2535, 3204
BpuEI CTTGAG 5 cut(s) 182, 761, 1127, 2306, 4013
BsaAI YACGTR 2 cut(s) 36, 1983
BsaBI GATNNNNATC 3 cut(s) 705, 711, 1691
BsaI GGTCTC 4 cut(s) 376, 2861, 3631, 4031
BsaJI CCNNGG 8 cut(s) 454, 486, 1679, 2172, 2203, 2748, 3747, 3829
BsaWI WCCGGW 1 cut(s) 2739
BsaXI ACNNNNNCTCC 4 cut(s) 558, 588, 2058, 2088
Bsc4I CCNNNNNNNGG 4 cut(s) 461, 1171, 2942, 3608
Bse1I ACTGG 5 cut(s) 612, 1208, 2120, 3007, 3379
Bse21I CCTNAGG 1 cut(s) 2439
Bse3DI GCAATG 3 cut(s) 944, 1266, 1764
Bse8I GATNNNNATC 3 cut(s) 705, 711, 1691
BseBI CCWGG 6 cut(s) 456, 2273, 2514, 2750, 2844, 3199
BseDI CCNNGG 8 cut(s) 454, 486, 1679, 2172, 2203, 2748, 3747, 3829
BseJI GATNNNNATC 3 cut(s) 705, 711, 1691
BseLI CCNNNNNNNGG 4 cut(s) 461, 1171, 2942, 3608
BseMI GCAATG 3 cut(s) 944, 1266, 1764
BseMII CTCAG 4 cut(s) 1491, 2430, 2480, 3672
BseNI ACTGG 5 cut(s) 612, 1208, 2120, 3007, 3379
BseRI GAGGAG 3 cut(s) 95, 2801, 3164
BseSI GKGCMC 1 cut(s) 1846
BsgI GTGCAG 3 cut(s) 1472, 3306, 3617
Bsh1236I CGCG 1 cut(s) 643
BshNI GGYRCC 1 cut(s) 14
BsiSI CCGG 2 cut(s) 2740, 3471
BslFI GGGAC 3 cut(s) 801, 1074, 1652
BslI CCNNNNNNNGG 4 cut(s) 461, 1171, 2942, 3608
BsmAI GTCTC 7 cut(s) 19, 376, 1022, 2026, 2861, 3631, 4031
BsmFI GGGAC 3 cut(s) 801, 1074, 1652
BsmI GAATGC 2 cut(s) 57, 1999
Bso31I GGTCTC 4 cut(s) 376, 2861, 3631, 4031
Bsp1286I GDGCHC 2 cut(s) 1210, 1846
Bsp1407I TGTACA 1 cut(s) 3020
Bsp19I CCATGG 3 cut(s) 1679, 3747, 3829
BspACI CCGC 4 cut(s) 211, 253, 641, 3438
BspCNI CTCAG 4 cut(s) 1492, 2431, 2479, 3671
BspFNI CGCG 1 cut(s) 643
BspLI GGNNCC 8 cut(s) 16, 347, 451, 1090, 1640, 1694, 2738, 3505
BspMAI CTGCAG 1 cut(s) 1017
BspPI GGATC 8 cut(s) 1687, 1700, 1751, 2348, 2621, 3504, 3691, 3706
BspT107I GGYRCC 1 cut(s) 14
BspTNI GGTCTC 4 cut(s) 376, 2861, 3631, 4031
BsrDI GCAATG 3 cut(s) 944, 1266, 1764
BsrGI TGTACA 1 cut(s) 3020
BsrI ACTGG 5 cut(s) 612, 1208, 2120, 3007, 3379
BssECI CCNNGG 8 cut(s) 454, 486, 1679, 2172, 2203, 2748, 3747, 3829
BssNAI GTATAC 2 cut(s) 3578, 3742
BssT1I CCWWGG 6 cut(s) 486, 1679, 2172, 2203, 3747, 3829
Bst1107I GTATAC 2 cut(s) 3578, 3742
Bst2UI CCWGG 6 cut(s) 456, 2273, 2514, 2750, 2844, 3199
Bst6I CTCTTC 1 cut(s) 1046
BstAPI GCANNNNNTGC 1 cut(s) 1004
BstAUI TGTACA 1 cut(s) 3020
BstBAI YACGTR 2 cut(s) 36, 1983
BstC8I GCNNGC 5 cut(s) 1020, 2107, 2350, 2656, 3391
BstDEI CTNAG 5 cut(s) 1500, 2439, 2466, 3311, 3658
BstDSI CCRYGG 3 cut(s) 1679, 3747, 3829
BstENI CCTNNNNNAGG 1 cut(s) 1169
BstFNI CGCG 1 cut(s) 643
BstMAI GTCTC 7 cut(s) 19, 376, 1022, 2026, 2861, 3631, 4031
BstMWI GCNNNNNNNGC 9 cut(s) 456, 617, 1004, 1394, 2743, 2960, 3114, 3230, 3467
BstNI CCWGG 6 cut(s) 456, 2273, 2514, 2750, 2844, 3199
BstNSI RCATGY 1 cut(s) 2039
BstSCI CCNGG 6 cut(s) 454, 2271, 2512, 2748, 2842, 3197
BstSFI CTRYAG 5 cut(s) 1013, 1741, 3012, 3876, 4056
BstSLI GKGCMC 1 cut(s) 1846
BstSNI TACGTA 1 cut(s) 36
BstUI CGCG 1 cut(s) 643
BstV2I GAAGAC 2 cut(s) 146, 2594
BstX2I RGATCY 5 cut(s) 700, 1692, 3496, 3526, 3696
BstXI CCANNNNNNTGG 4 cut(s) 2566, 3198, 3954, 3987
BstYI RGATCY 5 cut(s) 700, 1692, 3496, 3526, 3696
BstZ17I GTATAC 2 cut(s) 3578, 3742
Bsu36I CCTNAGG 1 cut(s) 2439
BsuI GTATCC 1 cut(s) 2660
BtgI CCRYGG 3 cut(s) 1679, 3747, 3829
BtgZI GCGATG 2 cut(s) 1984, 3554
BtsIMutI CAGTG 7 cut(s) 600, 605, 1750, 3000, 3000, 3386, 3600
Cac8I GCNNGC 5 cut(s) 1020, 2107, 2350, 2656, 3391
Cfr13I GGNCC 7 cut(s) 208, 449, 638, 887, 1088, 1639, 3107
DdeI CTNAG 5 cut(s) 1500, 2439, 2466, 3311, 3658
DraI TTTAAA 1 cut(s) 267
EaeI YGGCCR 3 cut(s) 1395, 3468, 3846
Eam1104I CTCTTC 1 cut(s) 1046
EarI CTCTTC 1 cut(s) 1046
Eco105I TACGTA 1 cut(s) 36
Eco130I CCWWGG 6 cut(s) 486, 1679, 2172, 2203, 3747, 3829
Eco147I AGGCCT 2 cut(s) 1222, 2512
Eco24I GRGCYC 1 cut(s) 1210
Eco31I GGTCTC 4 cut(s) 376, 2861, 3631, 4031
Eco32I GATATC 2 cut(s) 918, 3923
Eco47I GGWCC 5 cut(s) 208, 638, 887, 1088, 1639
Eco57I CTGAAG 4 cut(s) 267, 1275, 2165, 2507
Eco81I CCTNAGG 1 cut(s) 2439
EcoNI CCTNNNNNAGG 1 cut(s) 1169
EcoO109I RGGNCCY 2 cut(s) 449, 1088
EcoRI GAATTC 3 cut(s) 1423, 3268, 3942
EcoRII CCWGG 6 cut(s) 454, 2271, 2512, 2748, 2842, 3197
EcoRV GATATC 2 cut(s) 918, 3923
EcoT14I CCWWGG 6 cut(s) 486, 1679, 2172, 2203, 3747, 3829
EcoT22I ATGCAT 1 cut(s) 3058
EcoT38I GRGCYC 1 cut(s) 1210
ErhI CCWWGG 6 cut(s) 486, 1679, 2172, 2203, 3747, 3829
FalI AAGNNNNNCTT 2 cut(s) 3222, 3254
FaqI GGGAC 3 cut(s) 801, 1074, 1652
FauNDI CATATG 2 cut(s) 1212, 1599
FbaI TGATCA 1 cut(s) 1728
FblI GTMKAC 3 cut(s) 1434, 3577, 3741
FriOI GRGCYC 1 cut(s) 1210
GsuI CTGGAG 2 cut(s) 2535, 3204
HapII CCGG 2 cut(s) 2740, 3471
HincII GTYRAC 2 cut(s) 566, 1347
HindII GTYRAC 2 cut(s) 566, 1347
HindIII AAGCTT 2 cut(s) 282, 1386
HinfI GANTC 6 cut(s) 118, 789, 861, 2714, 2759, 4043
HpaII CCGG 2 cut(s) 2740, 3471
Hpy99I CGWCG 1 cut(s) 475
HpyCH4IV ACGT 5 cut(s) 35, 473, 975, 1713, 1982
HpyF10VI GCNNNNNNNGC 9 cut(s) 456, 617, 1004, 1394, 2743, 2960, 3114, 3230, 3467
HpyF3I CTNAG 5 cut(s) 1500, 2439, 2466, 3311, 3658
HpySE526I ACGT 5 cut(s) 35, 473, 975, 1713, 1982
Ksp22I TGATCA 1 cut(s) 1728
LmnI GCTCC 6 cut(s) 1507, 1544, 2742, 2797, 3509, 3990
LweI GCATC 8 cut(s) 311, 867, 2266, 2280, 2327, 2941, 3043, 3242
MaeII ACGT 5 cut(s) 35, 473, 975, 1713, 1982
MfeI CAATTG 2 cut(s) 2886, 2967
MflI RGATCY 5 cut(s) 700, 1692, 3496, 3526, 3696
MhlI GDGCHC 2 cut(s) 1210, 1846
MlsI TGGCCA 2 cut(s) 1397, 3848
MluNI TGGCCA 2 cut(s) 1397, 3848
MlyI GAGTC 3 cut(s) 783, 855, 2723
MmeI TCCRAC 9 cut(s) 129, 205, 263, 616, 865, 2009, 2815, 3186, 3733
Mox20I TGGCCA 2 cut(s) 1397, 3848
Mph1103I ATGCAT 1 cut(s) 3058
MscI TGGCCA 2 cut(s) 1397, 3848
MseI TTAA 6 cut(s) 266, 330, 668, 1314, 1578, 2007
MslI CAYNNNNRTG 4 cut(s) 1724, 2245, 2564, 3461
Msp20I TGGCCA 2 cut(s) 1397, 3848
MspI CCGG 2 cut(s) 2740, 3471
MspR9I CCNGG 6 cut(s) 456, 2273, 2514, 2750, 2844, 3199
MunI CAATTG 2 cut(s) 2886, 2967
Mva1269I GAATGC 2 cut(s) 57, 1999
MvaI CCWGG 6 cut(s) 456, 2273, 2514, 2750, 2844, 3199
MvnI CGCG 1 cut(s) 643
MwoI GCNNNNNNNGC 9 cut(s) 456, 617, 1004, 1394, 2743, 2960, 3114, 3230, 3467
NcoI CCATGG 3 cut(s) 1679, 3747, 3829
NdeI CATATG 2 cut(s) 1212, 1599
NlaIV GGNNCC 8 cut(s) 16, 347, 451, 1090, 1640, 1694, 2738, 3505
NmuCI GTSAC 3 cut(s) 1174, 1606, 2822
NsiI ATGCAT 1 cut(s) 3058
NspI RCATGY 1 cut(s) 2039
PceI AGGCCT 2 cut(s) 1222, 2512
PciI ACATGT 1 cut(s) 2035
PctI GAATGC 2 cut(s) 57, 1999
PfeI GAWTC 3 cut(s) 118, 2759, 4043
PfoI TCCNGGA 1 cut(s) 2271
PleI GAGTC 3 cut(s) 783, 855, 2722
PpsI GAGTC 3 cut(s) 783, 855, 2722
Ppu21I YACGTR 2 cut(s) 36, 1983
PpuMI RGGWCCY 1 cut(s) 1088
PscI ACATGT 1 cut(s) 2035
PshBI ATTAAT 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 1088
Psp6I CCWGG 6 cut(s) 454, 2271, 2512, 2748, 2842, 3197
PspGI CCWGG 6 cut(s) 454, 2271, 2512, 2748, 2842, 3197
PspN4I GGNNCC 8 cut(s) 16, 347, 451, 1090, 1640, 1694, 2738, 3505
PspPI GGNCC 7 cut(s) 208, 449, 638, 887, 1088, 1639, 3107
PspPPI RGGWCCY 1 cut(s) 1088
PstI CTGCAG 1 cut(s) 1017
PsuI RGATCY 5 cut(s) 700, 1692, 3496, 3526, 3696
RseI CAYNNNNRTG 4 cut(s) 1724, 2245, 2564, 3461
SaqAI TTAA 6 cut(s) 266, 330, 668, 1314, 1578, 2007
Sau96I GGNCC 7 cut(s) 208, 449, 638, 887, 1088, 1639, 3107
ScaI AGTACT 3 cut(s) 900, 2304, 3316
SchI GAGTC 3 cut(s) 783, 855, 2723
ScrFI CCNGG 6 cut(s) 456, 2273, 2514, 2750, 2844, 3199
SduI GDGCHC 2 cut(s) 1210, 1846
SfaNI GCATC 8 cut(s) 311, 867, 2266, 2280, 2327, 2941, 3043, 3242
SfcI CTRYAG 5 cut(s) 1013, 1741, 3012, 3876, 4056
SfiI GGCCNNNNNGGCC 1 cut(s) 3114
SinI GGWCC 5 cut(s) 208, 638, 887, 1088, 1639
SmiI ATTTAAAT 1 cut(s) 267
SmiMI CAYNNNNRTG 4 cut(s) 1724, 2245, 2564, 3461
SmlI CTYRAG 5 cut(s) 197, 776, 1106, 2285, 4028
SmoI CTYRAG 5 cut(s) 197, 776, 1106, 2285, 4028
SnaBI TACGTA 1 cut(s) 36
SseBI AGGCCT 2 cut(s) 1222, 2512
SsiI CCGC 4 cut(s) 211, 253, 641, 3438
SspI AATATT 4 cut(s) 691, 757, 2922, 3359
StuI AGGCCT 2 cut(s) 1222, 2512
StyD4I CCNGG 6 cut(s) 454, 2271, 2512, 2748, 2842, 3197
StyI CCWWGG 6 cut(s) 486, 1679, 2172, 2203, 3747, 3829
SwaI ATTTAAAT 1 cut(s) 267
TaiI ACGT 5 cut(s) 38, 476, 978, 1716, 1985
TaqI TCGA 8 cut(s) 258, 792, 1044, 1831, 2409, 2430, 2915, 3138
TaqII GACCGA 1 cut(s) 56
TatI WGTACW 8 cut(s) 898, 1119, 2302, 3020, 3314, 3342, 3654, 4120
TfiI GAWTC 3 cut(s) 118, 2759, 4043
Tru1I TTAA 6 cut(s) 266, 330, 668, 1314, 1578, 2007
Tru9I TTAA 6 cut(s) 266, 330, 668, 1314, 1578, 2007
TscAI CASTG 7 cut(s) 600, 612, 1750, 3000, 3007, 3386, 3600
TseFI GTSAC 3 cut(s) 1174, 1606, 2822
Tsp45I GTSAC 3 cut(s) 1174, 1606, 2822
TspGWI ACGGA 1 cut(s) 1005
TspRI CASTG 7 cut(s) 600, 612, 1750, 3000, 3007, 3386, 3600
VpaK11BI GGWCC 5 cut(s) 208, 638, 887, 1088, 1639
VspI ATTAAT 1 cut(s) 330
XagI CCTNNNNNAGG 1 cut(s) 1169
XceI RCATGY 1 cut(s) 2039
XcmI CCANNNNNNNNNTGG 1 cut(s) 1817
XmaJI CCTAGG 1 cut(s) 2203
XmiI GTMKAC 3 cut(s) 1434, 3577, 3741
ZrmI AGTACT 3 cut(s) 900, 2304, 3316
Zsp2I ATGCAT 1 cut(s) 3058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.