Rorug02G0223600

Aspartokinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
21667076 .. 21668034
959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0223600.1

Sequence Viewer

Length: 423 bp
ATGCAACTAGAATTTTGTTGCGGTTCAGAGAAAGTCTCAAGGATGGTTGAAAAGGTTTGCAAGGATCATCAGATGCTTGTTGACATATTTGTGAACTATGACTGCGATCTTGAGGCACTGAACTTGTTTGAGCGGATGAATATCTCAAGGGATGCAAAATGCAGATCCAATATGGCTGTTGTGTCCCAGACTACTTCAATAAAGGGTTCGTCTCTTCTGTGTCTTGTGAATGTGCTTAAATCACTCGTAGATTGGGAAAAGTCATGTGGAGAATCAGATAGAATAAAAACATTCAGTCTTTGGAAGGAGATGCTTCAACTAAAGAGTGTTGATGTGAAAAGCAGGCAAGATGCAACCATTAACTTTGAGAAGGCAAAAGCTCATAAGTCTACAGTGGAATCTGCCATATTTGAGGTGGAATAA

Protein Analysis

140

Amino Acids

15.97

Weight (kDa)

6.16

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 14 - 41 1.3e-06 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 389
AciI CCGC 2 cut(s) 21, 133
AclWI GGATC 2 cut(s) 72, 159
AcsI RAATTY 1 cut(s) 11
AgsI TTSAA 3 cut(s) 50, 198, 317
AluBI AGCT 1 cut(s) 380
AluI AGCT 1 cut(s) 380
Alw26I GTCTC 2 cut(s) 40, 216
AlwI GGATC 2 cut(s) 72, 159
ApoI RAATTY 1 cut(s) 11
BccI CCATC 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 40, 216
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 390
BmsI GCATC 4 cut(s) 63, 142, 300, 340
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpuEI CTTGAG 3 cut(s) 22, 130, 131
BsaBI GATNNNNATC 1 cut(s) 140
Bse8I GATNNNNATC 1 cut(s) 140
BseGI GGATG 3 cut(s) 48, 141, 157
BseJI GATNNNNATC 1 cut(s) 140
BslFI GGGAC 1 cut(s) 169
BsmAI GTCTC 2 cut(s) 40, 216
BsmBI CGTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 169
Bsp143I GATC 3 cut(s) 64, 106, 164
BspACI CCGC 2 cut(s) 21, 133
BspPI GGATC 2 cut(s) 72, 159
BsrBI CCGCTC 1 cut(s) 133
BssMI GATC 3 cut(s) 64, 106, 164
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 344
BstF5I GGATG 3 cut(s) 48, 141, 157
BstKTI GATC 3 cut(s) 67, 109, 167
BstMAI GTCTC 2 cut(s) 40, 216
BstMBI GATC 3 cut(s) 64, 106, 164
BstSFI CTRYAG 1 cut(s) 390
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BtsCI GGATG 3 cut(s) 48, 141, 157
BtsIMutI CAGTG 2 cut(s) 116, 399
Cac8I GCNNGC 1 cut(s) 344
CviAII CATG 1 cut(s) 264
CviJI RGCY 2 cut(s) 176, 380
CviKI_1 RGCY 2 cut(s) 176, 380
DpnI GATC 3 cut(s) 66, 108, 166
DpnII GATC 3 cut(s) 64, 106, 164
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 1 cut(s) 267
FaiI YATR 6 cut(s) 86, 99, 173, 265, 384, 407
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 263
FblI GTMKAC 1 cut(s) 389
FokI GGATG 3 cut(s) 55, 148, 164
FspBI CTAG 1 cut(s) 8
Hin1II CATG 1 cut(s) 267
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 2 cut(s) 272, 398
Hpy166II GTNNAC 3 cut(s) 82, 94, 390
Hpy188I TCNGA 3 cut(s) 28, 72, 277
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 3 cut(s) 82, 94, 390
HpyAV CCTTC 2 cut(s) 298, 364
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4V TGCA 5 cut(s) 4, 60, 155, 162, 353
Hsp92II CATG 1 cut(s) 267
Kzo9I GATC 3 cut(s) 64, 106, 164
LpnPI CCDG 2 cut(s) 200, 328
LweI GCATC 4 cut(s) 63, 142, 300, 340
MaeI CTAG 1 cut(s) 8
MalI GATC 3 cut(s) 66, 108, 166
MbiI CCGCTC 1 cut(s) 133
MboI GATC 3 cut(s) 64, 106, 164
MboII GAAGA 1 cut(s) 206
MflI RGATCY 1 cut(s) 164
MluCI AATT 1 cut(s) 11
MnlI CCTC 2 cut(s) 106, 406
MseI TTAA 2 cut(s) 237, 360
MslI CAYNNNNRTG 1 cut(s) 89
NdeII GATC 3 cut(s) 64, 106, 164
NlaIII CATG 1 cut(s) 267
PfeI GAWTC 2 cut(s) 272, 398
PsuI RGATCY 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 89
SaqAI TTAA 2 cut(s) 237, 360
Sau3AI GATC 3 cut(s) 64, 106, 164
SetI ASST 3 cut(s) 57, 382, 417
SfaNI GCATC 4 cut(s) 63, 142, 300, 340
SfcI CTRYAG 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 3 cut(s) 37, 110, 145
SmoI CTYRAG 3 cut(s) 37, 110, 145
Sse9I AATT 1 cut(s) 11
SsiI CCGC 2 cut(s) 21, 133
SspMI CTAG 1 cut(s) 8
TaaI ACNGT 1 cut(s) 394
TasI AATT 1 cut(s) 11
TfiI GAWTC 2 cut(s) 272, 398
Tru1I TTAA 2 cut(s) 237, 360
Tru9I TTAA 2 cut(s) 237, 360
TscAI CASTG 2 cut(s) 123, 399
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 2 cut(s) 123, 399
XapI RAATTY 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 389
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.