Rorug06G0283300
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
43157347 .. 43163398
6052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0283300.1

Sequence Viewer

Length: 1374 bp
ATGGAGAAAGCTCTTAACAGACAGAGGGTTCTGCTTCACCACTTGAGACCCAATTCTTCTTTGTCTTCTGCAACTCAAACCCATGAATCTTCTGCCGCCCTCTCTGCTTCAATATGTGCAGCTGGGGATAGTGCTGCTTATCATAGAACAGCTGCTTTTGGAGATGATATAGTGATTGTAGCGGCCTACCGAACTGCCATTTGCAAGGCAAAGCGAGGCGGCTTTAAGGATACTTTAGCTGATGATTTACTGGCACCTGTTTTGAAGGCAGTTATAGAGAGAACAAATTTGAACCCAAGTGAAGTAGGGGATATAGTTGTCGGCACAGTTCTGGCTCCTGGCTCACTTAGAGCAATTGAGTGCAGGATGGCAGCATTCTATGCTGGTTTTCCTGATACGGTTCCCATCAGAACCGTCAACAGACAATGTTCATCTGGCCTTCAGGCAGTTGCTGATGTAGCTGCATTCATAAAGGCAGGGTATTATGACATTGGCATTGCAGCAGGAGTGGAGTGCATGACAGTTGATAGCATTGGTAGTGTCCGTAGACTTAACCCCAAGGCTGAAGCCTTTGCACAAGCCCGTGACTGTCTTCTTCCTATGGGTGTTACTTCTGAAAATGTTGCACAGCGTTATGGTGTAACACGACAGGAGCAAGACCAAGCTGCTGTTGAATCACATAGGCGTGCTGCTGCAGCAACTGCATCTGGTAAATTCAAAGAAGAAATTGTCCCTGTATCTACTAAGATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTACAATTTATGTGGATGATGGCATCCGGCCAAATGCAAACATGACTGATTTGGCGAAACTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCAGGAAATGCTAGCCAGGTGAGTGATGGCGCTGGAGCAGTACTCCTGATGAAGAGAAGTGTAGCTATTCAGAAGGGACTTCCTATTATTGGTGTTTTCAGGAGTTTTGCTGCTGTTGGTGTGGATCCCGCTGTCATGGGCATAGGCCCAGCTGCTGCAATTCCAGTAGCCGTGAAATCTGCTGGTCTTGAGCTTGGCGATATTGATCTATTTGAAATAAATGAGGCGTTTGCATCTCAGTATGTATACTGTCAGAAGAAATTGGAACTTGATTCCGAAAAAGTCAATGTTAATGGAGGTGCTATTGCTTTGGGTCATCCCTTGGGCGCTACAGGTGCTCGGTGTGTTGCAACTCTATTGAATGAGATGAAACGCCGTGGCAAGGATTGTCGTTTTGGTGTAATCTCCATGTGCATAGGCTCGGGTATGGGGGCTGCTGCAGTTTTGGAAAGAGGTGACGCGGTTGATGAGCTATGCAATGCTAGAACATGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

457

Amino Acids

47.9

Weight (kDa)

7.93

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 57 - 312 1.6e-75 Thiolase, N-terminal domain
Thiolase_C PF02803 321 - 443 1.3e-48 Thiolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 253
AccB7I CCANNNNNTGG 1 cut(s) 764
AccI GTMKAC 2 cut(s) 547, 1122
AccII CGCG 1 cut(s) 1337
AciI CCGC 5 cut(s) 96, 182, 219, 1005, 1337
AclWI GGATC 2 cut(s) 995, 1008
AcoI YGGCCR 1 cut(s) 809
AcsI RAATTY 2 cut(s) 286, 713
AcuI CTGAAG 3 cut(s) 425, 585, 863
AfaI GTAC 1 cut(s) 918
AfiI CCNNNNNNNGG 3 cut(s) 764, 965, 1258
AgsI TTSAA 7 cut(s) 111, 265, 292, 674, 718, 1091, 1237
AjnI CCWGG 2 cut(s) 337, 891
Alw21I GWGCWC 1 cut(s) 1216
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 2 cut(s) 995, 1008
AlwNI CAGNNNCTG 3 cut(s) 452, 701, 1031
Ama87I CYCGRG 1 cut(s) 1297
AoxI GGCC 4 cut(s) 183, 436, 809, 1021
ApoI RAATTY 2 cut(s) 286, 713
AspLEI GCGC 2 cut(s) 908, 1205
AspS9I GGNCC 2 cut(s) 754, 1022
AsuHPI GGTGA 3 cut(s) 29, 907, 1343
AsuNHI GCTAGC 1 cut(s) 887
AvaI CYCGRG 1 cut(s) 1297
AvaII GGWCC 1 cut(s) 754
BamHI GGATCC 1 cut(s) 1000
BanI GGYRCC 1 cut(s) 253
BbsI GAAGAC 2 cut(s) 57, 584
Bbv12I GWGCWC 1 cut(s) 1216
BccI CCATC 5 cut(s) 361, 413, 794, 857, 896
BceAI ACGGC 2 cut(s) 1031, 1236
BciT130I CCWGG 2 cut(s) 339, 893
BciVI GTATCC 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 2 cut(s) 888, 1359
BfmI CTRYAG 4 cut(s) 693, 876, 1206, 1314
BfoI RGCGCY 2 cut(s) 909, 1206
BfuI GTATCC 1 cut(s) 223
BmcAI AGTACT 1 cut(s) 918
Bme1390I CCNGG 2 cut(s) 339, 893
Bme18I GGWCC 1 cut(s) 754
BmeT110I CYCGRG 1 cut(s) 1297
BmgT120I GGNCC 2 cut(s) 754, 1022
BmiI GGNNCC 5 cut(s) 255, 336, 402, 756, 1002
BmrFI CCNGG 2 cut(s) 339, 893
BmsI GCATC 3 cut(s) 713, 813, 1118
BmtI GCTAGC 1 cut(s) 891
BpiI GAAGAC 2 cut(s) 57, 584
BplI GAGNNNNNCTC 2 cut(s) 903, 935
BpmI CTGGAG 2 cut(s) 786, 930
BpuEI CTTGAG 2 cut(s) 64, 1085
BsaBI GATNNNNATC 1 cut(s) 1080
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 558, 1197, 1252
Bsc4I CCNNNNNNNGG 3 cut(s) 764, 965, 1258
Bse1I ACTGG 3 cut(s) 255, 769, 1040
Bse3DI GCAATG 2 cut(s) 495, 1360
Bse8I GATNNNNATC 1 cut(s) 1080
BseBI CCWGG 2 cut(s) 339, 893
BseDI CCNNGG 3 cut(s) 558, 1197, 1252
BseGI GGATG 4 cut(s) 372, 802, 804, 1192
BseJI GATNNNNATC 1 cut(s) 1080
BseLI CCNNNNNNNGG 3 cut(s) 764, 965, 1258
BseMI GCAATG 2 cut(s) 495, 1360
BseMII CTCAG 1 cut(s) 1127
BseNI ACTGG 3 cut(s) 255, 769, 1040
BseRI GAGGAG 1 cut(s) 785
BseYI CCCAGC 2 cut(s) 122, 1024
BsgI GTGCAG 2 cut(s) 138, 382
Bsh1236I CGCG 1 cut(s) 1337
BshFI GGCC 4 cut(s) 185, 438, 811, 1023
BshNI GGYRCC 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 1216
BsiHKCI CYCGRG 1 cut(s) 1297
BsiSI CCGG 1 cut(s) 808
BslFI GGGAC 3 cut(s) 716, 880, 966
BslI CCNNNNNNNGG 3 cut(s) 764, 965, 1258
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 3 cut(s) 716, 880, 966
BsmI GAATGC 2 cut(s) 374, 464
BsnI GGCC 4 cut(s) 185, 438, 811, 1023
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 1297
Bsp1286I GDGCHC 1 cut(s) 1216
Bsp143I GATC 2 cut(s) 1000, 1081
BspACI CCGC 5 cut(s) 96, 182, 219, 1005, 1337
BspANI GGCC 4 cut(s) 185, 438, 811, 1023
BspCNI CTCAG 1 cut(s) 1126
BspFNI CGCG 1 cut(s) 1337
BspLI GGNNCC 5 cut(s) 255, 336, 402, 756, 1002
BspMAI CTGCAG 3 cut(s) 697, 880, 1318
BspOI GCTAGC 1 cut(s) 891
BspPI GGATC 2 cut(s) 995, 1008
BspT107I GGYRCC 1 cut(s) 253
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 2 cut(s) 495, 1360
BsrI ACTGG 3 cut(s) 255, 769, 1040
BssECI CCNNGG 3 cut(s) 558, 1197, 1252
BssMI GATC 2 cut(s) 1000, 1081
BssNAI GTATAC 1 cut(s) 1123
BssT1I CCWWGG 2 cut(s) 558, 1197
Bst1107I GTATAC 1 cut(s) 1123
Bst2UI CCWGG 2 cut(s) 339, 893
Bst4CI ACNGT 6 cut(s) 328, 400, 415, 523, 590, 1127
Bst6I CTCTTC 1 cut(s) 923
BstAPI GCANNNNNTGC 3 cut(s) 380, 701, 884
BstC8I GCNNGC 3 cut(s) 687, 849, 889
BstDEI CTNAG 3 cut(s) 347, 744, 1113
BstDSI CCRYGG 1 cut(s) 1252
BstF5I GGATG 4 cut(s) 372, 802, 804, 1192
BstFNI CGCG 1 cut(s) 1337
BstH2I RGCGCY 2 cut(s) 909, 1206
BstHHI GCGC 2 cut(s) 908, 1205
BstKTI GATC 2 cut(s) 1003, 1084
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 2 cut(s) 1000, 1081
BstMWI GCNNNNNNNGC 7 cut(s) 104, 380, 458, 695, 701, 884, 1211
BstNI CCWGG 2 cut(s) 339, 893
BstNSI RCATGY 2 cut(s) 782, 1368
BstSCI CCNGG 2 cut(s) 337, 891
BstSFI CTRYAG 4 cut(s) 693, 876, 1206, 1314
BstUI CGCG 1 cut(s) 1337
BstV2I GAAGAC 2 cut(s) 57, 584
BstX2I RGATCY 1 cut(s) 1000
BstYI RGATCY 1 cut(s) 1000
BstZ17I GTATAC 1 cut(s) 1123
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 4 cut(s) 185, 438, 811, 1023
BtgI CCRYGG 1 cut(s) 1252
BtsCI GGATG 4 cut(s) 372, 802, 804, 1192
Cac8I GCNNGC 3 cut(s) 687, 849, 889
CaiI CAGNNNCTG 3 cut(s) 452, 701, 1031
CfoI GCGC 2 cut(s) 908, 1205
Cfr13I GGNCC 2 cut(s) 754, 1022
CseI GACGC 1 cut(s) 1343
Csp6I GTAC 1 cut(s) 917
CspCI CAANNNNNGTGG 2 cut(s) 774, 809
CviAII CATG 7 cut(s) 83, 517, 779, 823, 1012, 1285, 1365
CviQI GTAC 1 cut(s) 917
DdeI CTNAG 3 cut(s) 347, 744, 1113
DpnI GATC 2 cut(s) 1002, 1083
DpnII GATC 2 cut(s) 1000, 1081
DraI TTTAAA 1 cut(s) 856
EaeI YGGCCR 1 cut(s) 809
Eam1104I CTCTTC 1 cut(s) 923
EarI CTCTTC 1 cut(s) 923
Eco130I CCWWGG 2 cut(s) 558, 1197
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 754
Eco57I CTGAAG 3 cut(s) 425, 585, 863
Eco88I CYCGRG 1 cut(s) 1297
EcoRII CCWGG 2 cut(s) 337, 891
EcoT14I CCWWGG 2 cut(s) 558, 1197
ErhI CCWWGG 2 cut(s) 558, 1197
FaeI CATG 7 cut(s) 86, 520, 782, 826, 1015, 1288, 1368
FaqI GGGAC 3 cut(s) 716, 880, 966
FatI CATG 7 cut(s) 82, 516, 778, 822, 1011, 1284, 1364
FauI CCCGC 1 cut(s) 1012
FblI GTMKAC 2 cut(s) 547, 1122
FokI GGATG 4 cut(s) 379, 791, 809, 1179
FspBI CTAG 2 cut(s) 888, 1359
GlaI GCGC 2 cut(s) 907, 1204
GsaI CCCAGC 2 cut(s) 126, 1028
GsuI CTGGAG 2 cut(s) 786, 930
HaeII RGCGCY 2 cut(s) 909, 1206
HaeIII GGCC 4 cut(s) 185, 438, 811, 1023
HapII CCGG 1 cut(s) 808
HgaI GACGC 1 cut(s) 1343
HhaI GCGC 2 cut(s) 908, 1205
Hin1II CATG 7 cut(s) 86, 520, 782, 826, 1015, 1288, 1368
Hin6I GCGC 2 cut(s) 906, 1203
HinP1I GCGC 2 cut(s) 906, 1203
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 3 cut(s) 86, 674, 1148
HpaII CCGG 1 cut(s) 808
HphI GGTGA 3 cut(s) 29, 907, 1343
Hpy166II GTNNAC 4 cut(s) 418, 548, 754, 1123
Hpy188I TCNGA 6 cut(s) 410, 616, 862, 948, 1131, 1153
Hpy188III TCNNGA 4 cut(s) 392, 922, 976, 1064
Hpy8I GTNNAC 4 cut(s) 418, 548, 754, 1123
HpyAV CCTTC 3 cut(s) 259, 449, 943
HpyCH4III ACNGT 6 cut(s) 328, 400, 415, 523, 590, 1127
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 380, 458, 695, 701, 884, 1211
HpyF3I CTNAG 3 cut(s) 347, 744, 1113
Hsp92II CATG 7 cut(s) 86, 520, 782, 826, 1015, 1288, 1368
HspAI GCGC 2 cut(s) 906, 1203
Kzo9I GATC 2 cut(s) 1000, 1081
LmnI GCTCC 3 cut(s) 340, 652, 911
LweI GCATC 3 cut(s) 713, 813, 1118
MaeI CTAG 2 cut(s) 888, 1359
MaeIII GTNAC 5 cut(s) 584, 607, 640, 781, 1331
MalI GATC 2 cut(s) 1002, 1083
MboI GATC 2 cut(s) 1000, 1081
MboII GAAGA 8 cut(s) 48, 57, 81, 584, 587, 734, 940, 1144
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 1000
MhlI GDGCHC 1 cut(s) 1216
MluCI AATT 8 cut(s) 52, 286, 354, 713, 726, 786, 1035, 1136
MnlI CCTC 8 cut(s) 18, 110, 209, 763, 768, 1093, 1166, 1322
MseI TTAA 5 cut(s) 15, 225, 552, 855, 1167
MslI CAYNNNNRTG 1 cut(s) 684
MspA1I CMGCKG 4 cut(s) 122, 152, 1007, 1028
MspI CCGG 1 cut(s) 808
MspR9I CCNGG 2 cut(s) 339, 893
MunI CAATTG 1 cut(s) 354
Mva1269I GAATGC 2 cut(s) 374, 464
MvaI CCWGG 2 cut(s) 339, 893
MvnI CGCG 1 cut(s) 1337
MwoI GCNNNNNNNGC 7 cut(s) 104, 380, 458, 695, 701, 884, 1211
NdeII GATC 2 cut(s) 1000, 1081
NheI GCTAGC 1 cut(s) 887
NlaIII CATG 7 cut(s) 86, 520, 782, 826, 1015, 1288, 1368
NlaIV GGNNCC 5 cut(s) 255, 336, 402, 756, 1002
NmuCI GTSAC 2 cut(s) 584, 1331
NspI RCATGY 2 cut(s) 782, 1368
PctI GAATGC 2 cut(s) 374, 464
PfeI GAWTC 3 cut(s) 86, 674, 1148
PflMI CCANNNNNTGG 1 cut(s) 764
Psp6I CCWGG 2 cut(s) 337, 891
PspFI CCCAGC 2 cut(s) 122, 1024
PspGI CCWGG 2 cut(s) 337, 891
PspN4I GGNNCC 5 cut(s) 255, 336, 402, 756, 1002
PspPI GGNCC 2 cut(s) 754, 1022
PstI CTGCAG 3 cut(s) 697, 880, 1318
PstNI CAGNNNCTG 3 cut(s) 452, 701, 1031
PsuI RGATCY 1 cut(s) 1000
PvuII CAGCTG 3 cut(s) 122, 152, 1028
RsaI GTAC 1 cut(s) 918
RsaNI GTAC 1 cut(s) 917
RseI CAYNNNNRTG 1 cut(s) 684
SaqAI TTAA 5 cut(s) 15, 225, 552, 855, 1167
Sau3AI GATC 2 cut(s) 1000, 1081
Sau96I GGNCC 2 cut(s) 754, 1022
ScaI AGTACT 1 cut(s) 918
ScrFI CCNGG 2 cut(s) 339, 893
SduI GDGCHC 1 cut(s) 1216
SfaNI GCATC 3 cut(s) 713, 813, 1118
SfcI CTRYAG 4 cut(s) 693, 876, 1206, 1314
SinI GGWCC 1 cut(s) 754
SmiI ATTTAAAT 1 cut(s) 856
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 2 cut(s) 43, 1064
SmoI CTYRAG 2 cut(s) 43, 1064
Sse9I AATT 8 cut(s) 52, 286, 354, 713, 726, 786, 1035, 1136
SsiI CCGC 5 cut(s) 96, 182, 219, 1005, 1337
SspMI CTAG 2 cut(s) 888, 1359
StyD4I CCNGG 2 cut(s) 337, 891
StyI CCWWGG 2 cut(s) 558, 1197
SwaI ATTTAAAT 1 cut(s) 856
TaaI ACNGT 6 cut(s) 328, 400, 415, 523, 590, 1127
TasI AATT 8 cut(s) 52, 286, 354, 713, 726, 786, 1035, 1136
TatI WGTACW 1 cut(s) 916
TauI GCSGC 3 cut(s) 98, 185, 222
TfiI GAWTC 3 cut(s) 86, 674, 1148
Tru1I TTAA 5 cut(s) 15, 225, 552, 855, 1167
Tru9I TTAA 5 cut(s) 15, 225, 552, 855, 1167
TseFI GTSAC 2 cut(s) 584, 1331
Tsp45I GTSAC 2 cut(s) 584, 1331
TspDTI ATGAA 5 cut(s) 99, 420, 457, 941, 1259
TspGWI ACGGA 1 cut(s) 533
Van91I CCANNNNNTGG 1 cut(s) 764
VpaK11BI GGWCC 1 cut(s) 754
XapI RAATTY 2 cut(s) 286, 713
XceI RCATGY 2 cut(s) 782, 1368
XcmI CCANNNNNNNNNTGG 1 cut(s) 899
XmiI GTMKAC 2 cut(s) 547, 1122
XspI CTAG 2 cut(s) 888, 1359
ZrmI AGTACT 1 cut(s) 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.