Rorug06G0283200
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000493
Physical Location & Seq
Forward (+)
43135725 .. 43137089
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0283200.1

Sequence Viewer

Length: 486 bp
ATGGCTCAGACAAAGGCTATGAAGCAATTGAGAGAGGAAACGATAAAACAGTTGAGAAAAGAAATTGTATGTTCCCTCCAGAATGGTCAATCACAAGAAGAGAGTGCTCTTCTCCGGATACTAAGGCTATGTTTGGTACAGCTTTTAACCTCCTGTGCTTATAAGCAAAGACGACGTCGTGCATCCATCGGCGCCTCCGCCTTTGCTCTCCCTGGTGGCCACCTCGAGTTCGGGAAGAATTATCTTCAGTGGCATGGTACTCGGGCTGAGTTGGTGGTGACGGAAGCCGAGTTGTGCAATGAGATACTCAGTAATAAAGATGGATTCTATCCGAAACCCAAGTTCAGAGCTTATGCAAAGAAGATATTTGGGAAAGGCCTTCCACAATTAGAATGTGAAAACTGGGCGAAATCGCGAATGCTGGCCAACCATGCCTTCCATGGACAGAGCTTAAAATATAATGGCAAAAGAATGAAAGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

161

Amino Acids

18.4

Weight (kDa)

9.99

Isoelectric Point (pI)

62.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 162
AatII GACGTC 1 cut(s) 178
AccB1I GGYRCC 1 cut(s) 191
AccII CGCG 1 cut(s) 415
AccIII TCCGGA 1 cut(s) 114
AciI CCGC 1 cut(s) 198
AcoI YGGCCR 2 cut(s) 217, 423
AcuI CTGAAG 1 cut(s) 230
AcyI GRCGYC 2 cut(s) 175, 192
AfaI GTAC 2 cut(s) 138, 259
AjnI CCWGG 1 cut(s) 211
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 3 cut(s) 142, 350, 450
AluI AGCT 3 cut(s) 142, 350, 450
Alw21I GWGCWC 1 cut(s) 109
Ama87I CYCGRG 2 cut(s) 224, 261
Aor13HI TCCGGA 1 cut(s) 114
AoxI GGCC 3 cut(s) 217, 376, 423
ArsI GACNNNNNNTTYG 2 cut(s) 160, 192
AspLEI GCGC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 289
AvaI CYCGRG 2 cut(s) 224, 261
BalI TGGCCA 2 cut(s) 219, 425
BanI GGYRCC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 109
BccI CCATC 2 cut(s) 194, 314
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BciT130I CCWGG 1 cut(s) 213
BciVI GTATCC 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 195
BfuI GTATCC 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 213
BmeT110I CYCGRG 2 cut(s) 224, 261
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 213
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 1 cut(s) 191
BmuI ACTGGG 1 cut(s) 412
BpmI CTGGAG 1 cut(s) 62
BsaHI GRCGYC 2 cut(s) 175, 192
BsaJI CCNNGG 2 cut(s) 211, 439
BsaWI WCCGGW 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 304
BseAI TCCGGA 1 cut(s) 114
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 211, 439
BseGI GGATG 1 cut(s) 182
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 3 cut(s) 20, 258, 322
BseNI ACTGG 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 415
BshFI GGCC 3 cut(s) 219, 378, 425
BshNI GGYRCC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 2 cut(s) 224, 261
BsiSI CCGG 1 cut(s) 115
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 3 cut(s) 219, 378, 425
BsoBI CYCGRG 2 cut(s) 224, 261
Bsp1286I GDGCHC 1 cut(s) 109
Bsp13I TCCGGA 1 cut(s) 114
Bsp19I CCATGG 1 cut(s) 439
Bsp68I TCGCGA 1 cut(s) 415
BspACI CCGC 1 cut(s) 198
BspANI GGCC 3 cut(s) 219, 378, 425
BspCNI CTCAG 3 cut(s) 19, 259, 321
BspEI TCCGGA 1 cut(s) 114
BspFNI CGCG 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 193
BspQI GCTCTTC 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 304
BsrI ACTGG 1 cut(s) 407
BssECI CCNNGG 2 cut(s) 211, 439
BssNI GRCGYC 2 cut(s) 175, 192
BssT1I CCWWGG 1 cut(s) 439
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 2 cut(s) 93, 114
BstACI GRCGYC 2 cut(s) 175, 192
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 4 cut(s) 6, 122, 267, 308
BstDSI CCRYGG 1 cut(s) 439
BstF5I GGATG 1 cut(s) 182
BstFNI CGCG 1 cut(s) 415
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstUI CGCG 1 cut(s) 415
BsuI GTATCC 1 cut(s) 111
BsuRI GGCC 3 cut(s) 219, 378, 425
BtgI CCRYGG 1 cut(s) 439
BtsCI GGATG 1 cut(s) 182
BtsIMutI CAGTG 1 cut(s) 254
BtuMI TCGCGA 1 cut(s) 415
Cac8I GCNNGC 1 cut(s) 423
CfoI GCGC 1 cut(s) 194
Csp6I GTAC 2 cut(s) 137, 258
CviAII CATG 3 cut(s) 254, 431, 440
CviQI GTAC 2 cut(s) 137, 258
DdeI CTNAG 4 cut(s) 6, 122, 267, 308
DinI GGCGCC 1 cut(s) 193
EaeI YGGCCR 2 cut(s) 217, 423
Eam1104I CTCTTC 2 cut(s) 93, 114
EarI CTCTTC 2 cut(s) 93, 114
EciI GGCGGA 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 439
Eco147I AGGCCT 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 230
Eco88I CYCGRG 2 cut(s) 224, 261
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 439
EgeI GGCGCC 1 cut(s) 193
EheI GGCGCC 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 439
FaeI CATG 3 cut(s) 257, 434, 443
FaiI YATR 9 cut(s) 20, 70, 130, 162, 255, 354, 432, 441, 459
FatI CATG 3 cut(s) 253, 430, 439
FokI GGATG 1 cut(s) 169
GlaI GCGC 1 cut(s) 193
GsuI CTGGAG 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 3 cut(s) 219, 378, 425
HapII CCGG 1 cut(s) 115
HhaI GCGC 1 cut(s) 194
Hin1I GRCGYC 2 cut(s) 175, 192
Hin1II CATG 3 cut(s) 257, 434, 443
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 1 cut(s) 324
HpaII CCGG 1 cut(s) 115
HphI GGTGA 1 cut(s) 289
Hpy188I TCNGA 3 cut(s) 9, 333, 347
Hpy188III TCNNGA 4 cut(s) 79, 115, 232, 414
Hpy99I CGWCG 2 cut(s) 177, 180
HpyAV CCTTC 2 cut(s) 389, 445
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 182, 297, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpyF3I CTNAG 4 cut(s) 6, 122, 267, 308
HpySE526I ACGT 1 cut(s) 175
Hsp92I GRCGYC 2 cut(s) 175, 192
Hsp92II CATG 3 cut(s) 257, 434, 443
HspAI GCGC 1 cut(s) 192
KasI GGCGCC 1 cut(s) 191
Kpn2I TCCGGA 1 cut(s) 114
LguI GCTCTTC 1 cut(s) 114
LpnPI CCDG 7 cut(s) 92, 128, 166, 198, 225, 388, 407
LweI GCATC 1 cut(s) 191
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 277
MboII GAAGA 5 cut(s) 101, 110, 236, 247, 373
MfeI CAATTG 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 109
MlsI TGGCCA 2 cut(s) 219, 425
MluCI AATT 4 cut(s) 26, 63, 238, 386
MluNI TGGCCA 2 cut(s) 219, 425
Mly113I GGCGCC 1 cut(s) 192
MnlI CCTC 5 cut(s) 28, 86, 160, 205, 233
Mox20I TGGCCA 2 cut(s) 219, 425
MroI TCCGGA 1 cut(s) 114
MscI TGGCCA 2 cut(s) 219, 425
MseI TTAA 2 cut(s) 146, 452
Msp20I TGGCCA 2 cut(s) 219, 425
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 213
MunI CAATTG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 423
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 1 cut(s) 415
MwoI GCNNNNNNNGC 1 cut(s) 431
NarI GGCGCC 1 cut(s) 192
NcoI CCATGG 1 cut(s) 439
NlaIII CATG 3 cut(s) 257, 434, 443
NlaIV GGNNCC 1 cut(s) 193
NmeAIII GCCGAG 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 277
NruI TCGCGA 1 cut(s) 415
PaeR7I CTCGAG 1 cut(s) 224
PceI AGGCCT 1 cut(s) 378
PciSI GCTCTTC 1 cut(s) 114
PctI GAATGC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 324
PflFI GACNNNGTC 1 cut(s) 174
PluTI GGCGCC 1 cut(s) 195
PsiI TTATAA 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 193
PspXI VCTCGAGB 1 cut(s) 224
PsyI GACNNNGTC 1 cut(s) 174
RruI TCGCGA 1 cut(s) 415
RsaI GTAC 2 cut(s) 138, 259
RsaNI GTAC 2 cut(s) 137, 258
SapI GCTCTTC 1 cut(s) 114
SaqAI TTAA 2 cut(s) 146, 452
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 1 cut(s) 109
SetI ASST 6 cut(s) 144, 152, 178, 225, 352, 452
SfaNI GCATC 1 cut(s) 191
SfoI GGCGCC 1 cut(s) 193
Sfr274I CTCGAG 1 cut(s) 224
SlaI CTCGAG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 4 cut(s) 26, 63, 238, 386
SseBI AGGCCT 1 cut(s) 378
SsiI CCGC 1 cut(s) 198
SspDI GGCGCC 1 cut(s) 191
StuI AGGCCT 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 225
TasI AATT 4 cut(s) 26, 63, 238, 386
TfiI GAWTC 1 cut(s) 324
Tru1I TTAA 2 cut(s) 146, 452
Tru9I TTAA 2 cut(s) 146, 452
TscAI CASTG 1 cut(s) 254
TseFI GTSAC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 1 cut(s) 254
Tth111I GACNNNGTC 1 cut(s) 174
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XhoI CTCGAG 1 cut(s) 224
ZraI GACGTC 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.