RchiOBHm_Chr6g0298891
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000493
Physical Location & Seq
Forward (+)
60121415 .. 60123123
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26835

Sequence Viewer

Length: 909 bp
ATGAATGATGGTTACAATCCTGCAACTTGGATGTTAGAGGTTACTTCTGCAGCACAAGAATCAACTCTTGGGGTCAATTTCACCAACATATACAAGAACTCAGAAATGTACAGGAGAAACAAGGAATTGATCAAGGAACTAAGTACTCCACCAGAAAATTCAGTAGAATTGCACTTCACAACACAGTATTCTCAGTCCTTCTTTACCCAATGCATAACTTGCCTATGGAAACAACATCTGTCTTACTGGAGAAACCCGCCATACAGTGCAGCGAGACTTATTTACACAACTATGATGGCTATGGTATTTGGGATATTATTCTGGGGTCTTGGCTCCAAAAGGCAAAAGCAACAAGATCTTTTCAATGTATTAGGCTCTATGTATTCTGCCATACTCTTCATTGGGATACAAAATGCCTCATCAGTGCAGCCAGTTATAGCGATTGAGAGGGTAGTCTTTTACAGAGAAAGGGCAGCTGGAATGTACTCTGCTTTTCCATATGCATTTGGACAGGTTGTCATTGAGATACCATACACTTTGATCCAAACCACATTATATGTGGTTATAGTATACACCATGATCGGTTATGATTGGACGGTCAGCAAGTTCGTCTGGTATTTTTTCTTCATGTATTTCAGCTTCTTATACTACACATTAAATGGTATGATGATTGTGGCCATTACTCCCAACACTATGGTTGCTGCTGTGCTTTCCTCATCCTTCTACCCGTTATGGAACGTCTTTTCTGGATTTATCATTCCCAAAACAAGAATTCCAATATGGTGGAGATGGTTCTATTGGTTGTGCCCGATTTCTTGGACCTTATACGGATTGATTGCTTCGCAGTTTGGAGACATTAAGGACGCACTTGAATCTGGCAAAACTGTGGAGAATTTTATTAGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

302

Amino Acids

35.18

Weight (kDa)

8.27

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 69 - 283 1.4e-60 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 570
AciI CCGC 1 cut(s) 257
AclWI GGATC 1 cut(s) 535
AcoI YGGCCR 1 cut(s) 675
AcsI RAATTY 3 cut(s) 157, 771, 892
AfaI GTAC 3 cut(s) 110, 145, 485
AgsI TTSAA 2 cut(s) 364, 872
AhdI GACNNNNNGTC 1 cut(s) 515
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 2 cut(s) 476, 639
AluI AGCT 2 cut(s) 476, 639
Alw26I GTCTC 2 cut(s) 268, 846
AlwI GGATC 1 cut(s) 535
AoxI GGCC 1 cut(s) 675
ApeKI GCWGC 5 cut(s) 50, 269, 427, 473, 701
ApoI RAATTY 3 cut(s) 157, 771, 892
AspS9I GGNCC 1 cut(s) 819
AsuHPI GGTGA 1 cut(s) 73
AvaII GGWCC 1 cut(s) 819
BaeGI GKGCMC 1 cut(s) 809
BalI TGGCCA 1 cut(s) 677
BarI GAAGNNNNNNTAC 4 cut(s) 608, 623, 640, 655
BbvI GCAGC 5 cut(s) 62, 281, 439, 485, 688
BccI CCATC 3 cut(s) 2, 289, 783
BciVI GTATCC 1 cut(s) 399
BclI TGATCA 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 268, 846
BfmI CTRYAG 1 cut(s) 48
BfuI GTATCC 1 cut(s) 399
BglII AGATCT 1 cut(s) 355
BisI GCNGC 5 cut(s) 51, 270, 428, 474, 702
BlsI GCNGC 5 cut(s) 52, 271, 429, 475, 703
BmcAI AGTACT 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 819
BmeRI GACNNNNNGTC 1 cut(s) 515
BmgT120I GGNCC 1 cut(s) 819
BmiI GGNNCC 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 251, 431
BseGI GGATG 2 cut(s) 36, 716
BseMII CTCAG 2 cut(s) 114, 206
BseNI ACTGG 2 cut(s) 251, 431
BseSI GKGCMC 1 cut(s) 809
BseXI GCAGC 5 cut(s) 62, 281, 439, 485, 688
BsgI GTGCAG 2 cut(s) 288, 446
BshFI GGCC 1 cut(s) 677
BsmAI GTCTC 2 cut(s) 268, 846
BsnI GGCC 1 cut(s) 677
Bsp1286I GDGCHC 1 cut(s) 809
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 4 cut(s) 129, 355, 540, 579
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 677
BspCNI CTCAG 2 cut(s) 113, 205
BspLI GGNNCC 1 cut(s) 334
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 535
BsrGI TGTACA 1 cut(s) 108
BsrI ACTGG 2 cut(s) 251, 431
BssMI GATC 4 cut(s) 129, 355, 540, 579
BssNAI GTATAC 1 cut(s) 571
Bst1107I GTATAC 1 cut(s) 571
Bst4CI ACNGT 4 cut(s) 186, 266, 598, 886
Bst6I CTCTTC 1 cut(s) 401
BstAPI GCANNNNNTGC 1 cut(s) 219
BstAUI TGTACA 1 cut(s) 108
BstDEI CTNAG 3 cut(s) 100, 140, 192
BstF5I GGATG 2 cut(s) 36, 716
BstKTI GATC 4 cut(s) 132, 358, 543, 582
BstMAI GTCTC 2 cut(s) 268, 846
BstMBI GATC 4 cut(s) 129, 355, 540, 579
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 809
BstV1I GCAGC 5 cut(s) 62, 281, 439, 485, 688
BstX2I RGATCY 1 cut(s) 355
BstXI CCANNNNNNTGG 2 cut(s) 694, 783
BstYI RGATCY 1 cut(s) 355
BstZ17I GTATAC 1 cut(s) 571
BsuI GTATCC 1 cut(s) 399
BsuRI GGCC 1 cut(s) 677
BtsCI GGATG 2 cut(s) 36, 716
BtsIMutI CAGTG 2 cut(s) 271, 429
Cfr13I GGNCC 1 cut(s) 819
CseI GACGC 1 cut(s) 872
Csp6I GTAC 3 cut(s) 109, 144, 484
CviAII CATG 2 cut(s) 577, 628
CviJI RGCY 7 cut(s) 299, 333, 375, 430, 476, 639, 677
CviKI_1 RGCY 7 cut(s) 299, 333, 375, 430, 476, 639, 677
CviQI GTAC 3 cut(s) 109, 144, 484
DdeI CTNAG 3 cut(s) 100, 140, 192
DpnI GATC 4 cut(s) 131, 357, 542, 581
DpnII GATC 4 cut(s) 129, 355, 540, 579
DriI GACNNNNNGTC 1 cut(s) 515
EaeI YGGCCR 1 cut(s) 675
Eam1104I CTCTTC 1 cut(s) 401
Eam1105I GACNNNNNGTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 819
EcoRI GAATTC 1 cut(s) 771
EcoT22I ATGCAT 2 cut(s) 215, 505
FaeI CATG 2 cut(s) 580, 631
FatI CATG 2 cut(s) 576, 627
FauI CCCGC 1 cut(s) 264
FauNDI CATATG 1 cut(s) 499
FbaI TGATCA 1 cut(s) 129
FblI GTMKAC 1 cut(s) 570
Fnu4HI GCNGC 5 cut(s) 51, 270, 428, 474, 702
FokI GGATG 2 cut(s) 43, 703
Fsp4HI GCNGC 5 cut(s) 51, 270, 428, 474, 702
GluI GCNGC 5 cut(s) 51, 270, 428, 474, 702
GsuI CTGGAG 1 cut(s) 268
HaeIII GGCC 1 cut(s) 677
HgaI GACGC 1 cut(s) 872
Hin1II CATG 2 cut(s) 580, 631
HinfI GANTC 2 cut(s) 59, 872
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 571
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 747
Hpy8I GTNNAC 1 cut(s) 571
HpyAV CCTTC 2 cut(s) 208, 730
HpyCH4III ACNGT 4 cut(s) 186, 266, 598, 886
HpyCH4IV ACGT 1 cut(s) 738
HpyCH4V TGCA 7 cut(s) 23, 50, 172, 213, 269, 427, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
HpyF3I CTNAG 3 cut(s) 100, 140, 192
HpySE526I ACGT 1 cut(s) 738
Hsp92II CATG 2 cut(s) 580, 631
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 4 cut(s) 129, 355, 540, 579
LmnI GCTCC 1 cut(s) 338
Lsp1109I GCAGC 5 cut(s) 62, 281, 439, 485, 688
MaeII ACGT 1 cut(s) 738
MaeIII GTNAC 2 cut(s) 11, 40
MalI GATC 4 cut(s) 131, 357, 542, 581
MboI GATC 4 cut(s) 129, 355, 540, 579
MboII GAAGA 2 cut(s) 388, 616
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 1 cut(s) 809
MlsI TGGCCA 1 cut(s) 677
MluCI AATT 6 cut(s) 76, 125, 157, 167, 771, 892
MluNI TGGCCA 1 cut(s) 677
MnlI CCTC 4 cut(s) 31, 427, 441, 724
Mox20I TGGCCA 1 cut(s) 677
Mph1103I ATGCAT 2 cut(s) 215, 505
MscI TGGCCA 1 cut(s) 677
MseI TTAA 2 cut(s) 656, 858
MslI CAYNNNNRTG 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 677
MspA1I CMGCKG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 219
NdeI CATATG 1 cut(s) 499
NdeII GATC 4 cut(s) 129, 355, 540, 579
NlaIII CATG 2 cut(s) 580, 631
NlaIV GGNNCC 1 cut(s) 334
NsiI ATGCAT 2 cut(s) 215, 505
PfeI GAWTC 2 cut(s) 59, 872
PkrI GCNGC 5 cut(s) 52, 271, 429, 475, 703
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 819
PstI CTGCAG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 3 cut(s) 110, 145, 485
RsaNI GTAC 3 cut(s) 109, 144, 484
RseI CAYNNNNRTG 1 cut(s) 290
SaqAI TTAA 2 cut(s) 656, 858
SatI GCNGC 5 cut(s) 51, 270, 428, 474, 702
Sau3AI GATC 4 cut(s) 129, 355, 540, 579
Sau96I GGNCC 1 cut(s) 819
ScaI AGTACT 1 cut(s) 145
SduI GDGCHC 1 cut(s) 809
SetI ASST 6 cut(s) 42, 478, 516, 641, 741, 824
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 819
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 6 cut(s) 76, 125, 157, 167, 771, 892
SsiI CCGC 1 cut(s) 257
TaaI ACNGT 4 cut(s) 186, 266, 598, 886
TaiI ACGT 1 cut(s) 741
TasI AATT 6 cut(s) 76, 125, 157, 167, 771, 892
TatI WGTACW 3 cut(s) 108, 143, 483
TfiI GAWTC 2 cut(s) 59, 872
Tru1I TTAA 2 cut(s) 656, 858
Tru9I TTAA 2 cut(s) 656, 858
TscAI CASTG 2 cut(s) 271, 429
TseI GCWGC 5 cut(s) 50, 269, 427, 473, 701
TspDTI ATGAA 3 cut(s) 17, 388, 616
TspGWI ACGGA 1 cut(s) 843
TspRI CASTG 2 cut(s) 271, 429
VpaK11BI GGWCC 1 cut(s) 819
XapI RAATTY 3 cut(s) 157, 771, 892
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
XmiI GTMKAC 1 cut(s) 570
ZrmI AGTACT 1 cut(s) 145
Zsp2I ATGCAT 2 cut(s) 215, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.