RchiOBHm_Chr7g0211531
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000493
Physical Location & Seq
Reverse (-)
28639559 .. 28646767
7209 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18924

Sequence Viewer

Length: 4224 bp
ATGAACATCACATTCAGTCAAGAACAAGAAGAAGAGGAAATCATCGAGCCTCCTTCCGGTGAAGGAGCTGATGAGGAGTCCAGTCTGACAATGACGACGTACTGGTCTGCTGTAGAGCGGTTACCTACCTATTCCAGAACAAGGAGAGGAATTCTACTCGGCCAAGGTCAAGAGGAGGACGGTGAAAGCAGAGAGATTGATATCAAGAAGAATCTTGGACTACGAGAGAGGAAGACTTTGTTGGAGAGGCTGGTGCAGACTGTTGAGCAAGATAATGAAAAGTTGTTGCGCAAGATCAAGGACCGCATGAATAGAGTTGGACTTGAATTTCCAACAACTGAAGTGCGGTTCGAACATTTAAATGTTGAAGCAGAGGCTTATGTAGGAACCAGGGCGTCGTCACCTACAGTGTTCAACTTCTCCATCAATATGTTAGAGGTACCATCTCCTGGATCAAGAATGACACTTCTTTTAGGGCCACCTGGCTCTGGAAAGACCACGTTCTTATTGGCGTTGGCTGGAAAACTGGTTACATACAATGGAAGTGAGATGGATGAGTTTGTATCAGACAGGATGTCAGCTTATGTTACTCAACACGATCTACATATTCCAGAACTGACAGTGAGAGAGACACTGGCTTTTGCAGCTAGATGTCAAGGTGTTGGACCACGTTATGAAATGTTGGTGGAATTATTAAGGAGAGAAAAGGCTGCAAATATTATGCCAGATCTTGATCTTGATCTCTACATGAAGGCAGCAGCACTAGAAGGACAGGAAGCTAATATAGTTACAGACTTTATTCTTAAGATTTTGGGACTTGAAGATTGTGCTGACATTATGGTAGGAGACGAAATGACCAGAGGTATATCTGGTGGACAGAAAAAGAGACTCACCACAGGGGAGATGCTGGTTGGACCAGAAAGAGTCCTTCTGATGGATGAAATATCCAATGGGCTGGACAGCTCAACAACATTGCAATTAGTGAAATCACTACAACAATATGTCCACATTCTGAACGGAACTGCATTAATCGCTCTACTGCAGCCAGCACCGGAGACATACAATCTCTTTGATGATATAATTCTCCTCTCGGATGGCTACATCGTTTATCAGGGTCCACGTGAGAATGTTCTTGAGTTCTTTGAGTACATGGGCTTCAAATGTCCAGAGAGGAAAGGAGTTGCTGATTTCCTGCAAGAGGTGACATCAAGAAAAGATCAAGAGCAATACTGGGCTCATAGGGATAGGCCTTATAGATTTGTAACAACCAAGGCATTCTCTGAAGCAATGCAGTTATTTCACATCGGTAGAAAAGTTGGTGATGAGCTTTCTATTCCATTTAACAAGTCCGAAGGCCACCCTGCTGCATTGTCAACTAAAAAGTATGGTGTTAATAAGAAGGAATTGTTCAAAGTTTGTATGGCCAGACAAATTTTGCTTACAAAGAGGAATTCGTTTGTCTACATTTTCAAATTGGTTCAGCTTATTCTAGTTGCTCTTACAACAATGACATTATTTTTACGTACTGAGATGCACCAGAACACAGTAGCAGATGGTGGGATTTATATGGGAGCTTTATTCTATACACTACTCGCAATTATGCTTAATGGGTTTCCTGAGCTTCATATGACAGTCACTAGACTGCCTGTGTTTTTCAAGCAAAGGGACCATCTGTTCTATCCTGCTTGGGCATACTCTTTACCCACATGGATGATAAGGATCCCTATAACTTTTGTGGACGTTTCCATCTGGGTGATCATAACTTACTACCCTATAGGTTATGATCCGAGCATTGAAAGGTTTTTCAAACAGTTCCTTCTACTGCTGTGTATTAGCCAGATGGCAAATGGATTGTTTCGATTGATAGGGGCACTAGGAAGGAACATGACTATTGCAAATACATTTGGATTTGGTGCTTTACTTGTCATTCTTGGTCTGGGTGGCTTTGTCATATCACAAGAGGATATGAAGAAATGGTTGTTGTGGGGATATTGGCTCTCACCATTCACATATGGACTGAATGCCATCGCTGTCAATGAATTTCTTGGAGAAAGTTGGAGACACGTTCCTGCCAACTCAACAGAAGCATTAGGAGTTATGGTTTTGAAGTATCGAGGCATATTTCCGGAGGCACGCTTCTACTGGATTGGATTAGTAGCTTTGATTGGATTTATTCTTCTGTTGAATTTCCTTTTCACCTTGGCACTTCAGTATCTTGATCGTAAGTACCTAGGCATATTAATTTCTGTCTACAGATGGATACTATCAATGCTATGTTTTGACAATTCTGACAATTTCGTGGATGCAGCACTTGAGATGCCCCAAGCAGTACTATCCAATGAGGCATCCTCCACAACAGAAGATAGCAGAGTTGCAAGCAATCCTACTAGGCAGCATGGCATGGTTCTTCCATTTGAACCCCTTTCAATTACTTTCGAGGAAATCAGATATGCTGTTGATTTGCCTAAGGAAATGAAAGATCAAAGCAAAACTGGGGATCGGCTAGAACTTCTTAAGGGCGTGAGTGGTGCTTTTAGGCCTGGAGTTCTAACAGCTTTGATGGGTGTTAGTGGCGCTGGAAAAACCACTCTCATGGATGTCTTGGCAGGAAGGAAGACAAGTGGATATATTGAAGGTAGAATCACCTTATCTGGATATGCAAAAAGGCAAGAAACATTTGCTCGCATATCAGGATACTGTGAGCAAACAGATATACACTCCCCTCATGTCACTGTTTACGAGTCTTTGGTTTATTCTGCATGGCTCCGGTTGCCCCGTGAGGTTGATTCCCCAACCAGAAAGATGTTTATTGAGGAAGTCATGGAGCTTGTAGAAATGGCCTCAATAAGTGACAGATTTGTTGGATTTCCAGGAGTGAATGGTCTCTCAACTGAACAACGCAAAAGGCTAACAATTGCAGTAGAGCTTGTTGCCAACCCCTCGATAATATTTATGGATGAGCCGACCTCTGGCCTTGATGCTAGGGCAGCAGCAATTGTAATGAGAACAGTGAGGAATACAGTGGACACCGGGAGAACTGTAGTCTGTACCATCCACCAACCAAGCATTGATATATTTGATGCTTTTGATGAGATGTTGCTTTTGAAACGCGGGGGTGAAGAAATATATGTTGGCCCTTTAGGCCACCATTCTTCCCAGATGATCGAATACTTTGAGGAGATTTGTGGAGTTTCTAAAATAAAGGATGGTTACAATCCGGCAACTTGGATGTTGGAGGTTACTTCTCCAGCACAAGAAGCATCTCTTGGGGTTGATTTTGCATACATATACAAAAACTCAGAAATATTTAGGAAAAATAAGGCATTGATAAAAGAACTAAGTACTCCTGCACCAAATTCAAAGGACTTGTACTTCCCAACACGATATTCACAGTCTTTCTTCACCCAGTGTCTAGCTTGCCTATGGAAACAGCATGTATCGTATTGGCGAAACCCTCAATACACTGCGGTGAGACTTCTTTTCACAGCTACGATGGCTGCACTACTTGGATCATTTTTCTGGGATCTTGGTTCCAAAAGACAAAAGCAAAGAGATCTCTTTAGCGCGCTGGGTTCTATGTACGCTGCTGTTCTCTTTATTGGTATACAGAATTCCTTATCAGTGCAGCCAGTTGTACATGTTGAGAGGTTGGTCTCTTACAGAGAAACGGCAGCTGGAATGTACTCGGCTTTTCCATTTGCCTTTGGACAGGCCGTCATTGAGATCCCATACACTTTGATCCAGACTATCATATATGGGGTTATAGTATACTCCATGGTTGGATTTGATTGGACGGTCAGCAAGTTCTTTTTTTATCTATTGTTCATGTACCTCACCTTCTTATACTTCACCTTCCATGGGATGATGATTGTGTCAATTACTCCGAGCAACACCATGTCTGCTGTAGTTTCGTCCGCCTTCTACCCATTATGGAATGTCATTTCAGGATTTCTCATTCCCAAAACAAGAATTCCAATATGGTGGAGATGGTTCTATTGGGTCAGCCCGACCTCTTGGAGCTTGTATGGATTGTTTTCTTCCCAGTTTGGCGGACTCAAAGACACCCTTGATTCCGGTGAAACTGTAGATCATTTTATAAGCACATATTTTGGATATAGGAAAGACTTTCTAGGTGTTGTTGTAGCTGTACTTATTGGGTTTTCAGCGTTCTTTGTGTTCATCTTTGCTTTTGCAATCAAGAAACTAAACTTCCAAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1407

Amino Acids

159.49

Weight (kDa)

6.07

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_trans_N PF14510 89 - 139 2.8e-06 ABC-transporter N-terminal
ABC_tran PF00005 153 - 315 5.1e-13 ABC transporter
ABC2_membrane_7 PF19055 348 - 430 2.1e-06 ABC-2 type transporter
ABC2_membrane PF01061 469 - 681 7.8e-47 ABC-2 type transporter
PDR_assoc PF08370 686 - 740 4.6e-20 Plant PDR ABC transporter associated
ABC_tran PF00005 838 - 990 1.6e-20 ABC transporter
ABC2_membrane PF01061 1135 - 1349 2.2e-54 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000493)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29820 FvH4_2g29820 FvH4_2g29822 FvH4_2g29824 FvH4_2g29824 FvH4_2g29824 FvH4_2g29840 FvH4_2g29840 FvH4_2g29840 FvH4_5g00550 FvH4_5g00550
malus_domestica MD02G1032700.v1.1 MD08G1140900.v1.1 MD08G1141400.v1.1 MD15G1117800.v1.1 MD15G1117900.v1.1
prunus_persica Prupe.1G471200_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471300_v2.0.a1 Prupe.1G471400_v2.0.a1 Prupe.7G242900_v2.0.a1
pyrus_communis pycom02g02690 pycom08g11890
rosa_chinensis RchiOBHm_Chr2g0111741 RchiOBHm_Chr2g0145991 RchiOBHm_Chr6g0298851 RchiOBHm_Chr6g0298871 RchiOBHm_Chr6g0298891 RchiOBHm_Chr6g0298901 RchiOBHm_Chr6g0298911 RchiOBHm_Chr7g0201801 RchiOBHm_Chr7g0211531 RchiOBHm_Chr7g0214601
rosa_laevigata RLG00000002931 RLG00000003000 RLG00000003647 RLG00000011476 RLG00000011479
rosa_multiflora Rmu_sc0001030.1_g000012 Rmu_sc0001548.1_g000041 Rmu_ssc0000397.1_g000033 Rmu_ssc0000397.1_g000036 Rmu_ssc0000397.1_g000037 Rmu_ssc0000397.1_g000039 Rmu_ssc0000397.1_g000048
rosa_roxburghii Rroxscaffold_1G00003830 Rroxscaffold_3G00247810 Rroxscaffold_3G00255060 Rroxscaffold_7G00169220 Rroxscaffold_7G00169230 Rroxscaffold_7G00169280
rosa_rugosa Rorug02G0223600 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283100 Rorug06G0283200 Rorug06G0283300 Rorug06G0283400 Rorug06G0283500 Rorug07G0066000
rosa_samantha Rh2AG511300 Rh2CG235100 Rh2CG496400 Rh2DG330900 Rh6BG403100 Rh6BG403300 Rh6BG403400 Rh6BG403500 Rh6CG408700 Rh6CG408900 Rh6CG409000 Rh6CG409200 Rh6DG395800 Rh6DG395900 Rh6DG396000 Rh6DG396200 Rh7AG193400 Rh7BG195100 Rh7BG436600 Rh7DG199300 Rh7DG265500
rosa_wichuraiana Rw2G016900 Rw6G034570 Rw6G034580 Rw6G034590 Rw6G034600 Rw7G016900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4097
AasI GACNNNNNNGTC 1 cut(s) 103
Acc16I TGCGCA 1 cut(s) 290
Acc65I GGTACC 1 cut(s) 439
AccB1I GGYRCC 1 cut(s) 439
AccB7I CCANNNNNTGG 1 cut(s) 449
AccBSI CCGCTC 1 cut(s) 118
AccI GTMKAC 4 cut(s) 1461, 2250, 3604, 3768
AccII CGCG 2 cut(s) 3111, 3566
AccIII TCCGGA 1 cut(s) 2125
AciI CCGC 7 cut(s) 118, 304, 346, 3111, 3467, 3915, 4050
AclWI GGATC 9 cut(s) 460, 1714, 1727, 1778, 2505, 3517, 3531, 3718, 3733
AcoI YGGCCR 2 cut(s) 160, 1422
AcsI RAATTY 9 cut(s) 150, 326, 1431, 1450, 2039, 2185, 3355, 3610, 3969
AcuI CTGAAG 3 cut(s) 360, 1302, 2192
AcvI CACGTG 1 cut(s) 1121
AcyI GRCGYC 1 cut(s) 395
AdeI CACNNNGTG 1 cut(s) 3408
AfiI CCNNNNNNNGG 8 cut(s) 56, 141, 449, 488, 934, 1198, 2969, 3858
AflII CTTAAG 2 cut(s) 803, 2513
AflIII ACRYGT 2 cut(s) 2062, 3637
AhdI GACNNNNNGTC 2 cut(s) 574, 3713
AjnI CCWGG 5 cut(s) 389, 448, 481, 2539, 2869
AjuI GAANNNNNNNTTGG 8 cut(s) 224, 256, 3114, 3146, 3249, 3281, 3370, 3402
AleI CACNNNNGTG 1 cut(s) 3467
AloI GAACNNNNNNTCC 2 cut(s) 1658, 1690
Alw26I GTCTC 8 cut(s) 623, 840, 880, 1049, 2053, 2888, 3466, 3658
AlwI GGATC 9 cut(s) 460, 1714, 1727, 1778, 2505, 3517, 3531, 3718, 3733
Aor13HI TCCGGA 1 cut(s) 2125
ApoI RAATTY 9 cut(s) 150, 326, 1431, 1450, 2039, 2185, 3355, 3610, 3969
AseI ATTAAT 2 cut(s) 1028, 2240
Asp718I GGTACC 1 cut(s) 439
AspA2I CCTAGG 1 cut(s) 2230
AspLEI GCGC 4 cut(s) 291, 2576, 3566, 3568
AspS9I GGNCC 7 cut(s) 301, 476, 665, 914, 1115, 1666, 3134
AsuC2I CCSGG 1 cut(s) 3031
AsuII TTCGAA 1 cut(s) 351
AvaII GGWCC 5 cut(s) 301, 665, 914, 1115, 1666
AvrII CCTAGG 1 cut(s) 2230
AxyI CCTNAGG 1 cut(s) 2466
BaeGI GKGCMC 1 cut(s) 1873
BaeI ACNNNNGTAYC 2 cut(s) 2195, 2228
BalI TGGCCA 1 cut(s) 1424
BamHI GGATCC 1 cut(s) 1719
BanI GGYRCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 1237
BarI GAAGNNNNNNTAC 4 cut(s) 1139, 1171, 3821, 3853
BbrPI CACGTG 1 cut(s) 1121
BbsI GAAGAC 2 cut(s) 239, 2621
BceAI ACGGC 2 cut(s) 3684, 3698
BciT130I CCWGG 5 cut(s) 391, 450, 483, 2541, 2871
BciVI GTATCC 2 cut(s) 2253, 2687
BclI TGATCA 1 cut(s) 1755
BcnI CCSGG 1 cut(s) 3031
BcoDI GTCTC 8 cut(s) 623, 840, 880, 1049, 2053, 2888, 3466, 3658
BfmI CTRYAG 8 cut(s) 111, 405, 1040, 1773, 2251, 3039, 3903, 4083
BfoI RGCGCY 1 cut(s) 2577
BfrI CTTAAG 2 cut(s) 803, 2513
BfuI GTATCC 2 cut(s) 2253, 2687
BglI GCCNNNNNGGC 1 cut(s) 3141
BglII AGATCT 2 cut(s) 727, 3553
BlnI CCTAGG 1 cut(s) 2230
BmcAI AGTACT 2 cut(s) 2331, 3343
Bme1390I CCNGG 6 cut(s) 391, 450, 483, 2541, 2871, 3031
Bme18I GGWCC 5 cut(s) 301, 665, 914, 1115, 1666
BmeRI GACNNNNNGTC 2 cut(s) 574, 3713
BmgT120I GGNCC 7 cut(s) 301, 476, 665, 914, 1115, 1666, 3134
BmiI GGNNCC 7 cut(s) 388, 441, 1116, 1667, 1721, 2765, 3532
BmrFI CCNGG 6 cut(s) 391, 450, 483, 2541, 2871, 3031
BmrI ACTGGG 4 cut(s) 1240, 2502, 3400, 4036
BmsI GCATC 8 cut(s) 894, 1521, 2293, 2307, 2354, 2968, 3070, 3269
BmuI ACTGGG 4 cut(s) 1240, 2502, 3400, 4036
BpiI GAAGAC 2 cut(s) 239, 2621
BplI GAGNNNNNCTC 4 cut(s) 2333, 2365, 2951, 2983
BpmI CTGGAG 2 cut(s) 2562, 3231
Bpu10I CCTNAGC 1 cut(s) 1617
Bpu14I TTCGAA 1 cut(s) 351
BpuEI CTTGAG 2 cut(s) 1154, 2333
BpuMI CCSGG 1 cut(s) 3031
BsaAI YACGTR 2 cut(s) 1121, 1523
BsaBI GATNNNNATC 4 cut(s) 200, 732, 738, 1718
BsaHI GRCGYC 1 cut(s) 395
BsaI GGTCTC 2 cut(s) 2888, 3658
BsaJI CCNNGG 7 cut(s) 163, 390, 1269, 2199, 2230, 3774, 3856
BsaWI WCCGGW 5 cut(s) 56, 1051, 2125, 2766, 4073
BsaXI ACNNNNNCTCC 2 cut(s) 2085, 2115
Bsc4I CCNNNNNNNGG 8 cut(s) 56, 141, 449, 488, 934, 1198, 2969, 3858
Bse21I CCTNAGG 1 cut(s) 2466
Bse3DI GCAATG 2 cut(s) 971, 1293
Bse8I GATNNNNATC 4 cut(s) 200, 732, 738, 1718
BseAI TCCGGA 1 cut(s) 2125
BseBI CCWGG 5 cut(s) 391, 450, 483, 2541, 2871
BseDI CCNNGG 7 cut(s) 163, 390, 1269, 2199, 2230, 3774, 3856
BseJI GATNNNNATC 4 cut(s) 200, 732, 738, 1718
BseLI CCNNNNNNNGG 8 cut(s) 56, 141, 449, 488, 934, 1198, 2969, 3858
BseMI GCAATG 2 cut(s) 971, 1293
BseMII CTCAG 3 cut(s) 1518, 1608, 3312
BsePI GCGCGC 1 cut(s) 3564
BseRI GAGGAG 4 cut(s) 89, 188, 1076, 3191
BseSI GKGCMC 1 cut(s) 1873
BseYI CCCAGC 1 cut(s) 3568
BsgI GTGCAG 4 cut(s) 275, 3333, 3483, 3644
Bsh1236I CGCG 2 cut(s) 3111, 3566
BshNI GGYRCC 1 cut(s) 439
BsiSI CCGG 7 cut(s) 57, 1052, 2126, 2767, 3030, 3218, 4074
BslFI GGGAC 2 cut(s) 828, 1679
BslI CCNNNNNNNGG 8 cut(s) 56, 141, 449, 488, 934, 1198, 2969, 3858
BsmAI GTCTC 8 cut(s) 623, 840, 880, 1049, 2053, 2888, 3466, 3658
BsmBI CGTCTC 1 cut(s) 840
BsmFI GGGAC 2 cut(s) 828, 1679
BsmI GAATGC 2 cut(s) 1274, 2026
Bso31I GGTCTC 2 cut(s) 2888, 3658
Bsp119I TTCGAA 1 cut(s) 351
Bsp1286I GDGCHC 2 cut(s) 1237, 1873
Bsp13I TCCGGA 1 cut(s) 2125
Bsp1407I TGTACA 1 cut(s) 3634
Bsp19I CCATGG 2 cut(s) 3774, 3856
BspACI CCGC 7 cut(s) 118, 304, 346, 3111, 3467, 3915, 4050
BspCNI CTCAG 3 cut(s) 1519, 1609, 3311
BspEI TCCGGA 1 cut(s) 2125
BspFNI CGCG 2 cut(s) 3111, 3566
BspLI GGNNCC 7 cut(s) 388, 441, 1116, 1667, 1721, 2765, 3532
BspMAI CTGCAG 1 cut(s) 1044
BspPI GGATC 9 cut(s) 460, 1714, 1727, 1778, 2505, 3517, 3531, 3718, 3733
BspT104I TTCGAA 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 439
BspTI CTTAAG 2 cut(s) 803, 2513
BspTNI GGTCTC 2 cut(s) 2888, 3658
BsrBI CCGCTC 1 cut(s) 118
BsrDI GCAATG 2 cut(s) 971, 1293
BsrGI TGTACA 1 cut(s) 3634
BssECI CCNNGG 7 cut(s) 163, 390, 1269, 2199, 2230, 3774, 3856
BssHII GCGCGC 1 cut(s) 3564
BssNAI GTATAC 2 cut(s) 3605, 3769
BssNI GRCGYC 1 cut(s) 395
BssT1I CCWWGG 6 cut(s) 163, 1269, 2199, 2230, 3774, 3856
Bst1107I GTATAC 2 cut(s) 3605, 3769
Bst2UI CCWGG 5 cut(s) 391, 450, 483, 2541, 2871
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 395
BstAFI CTTAAG 2 cut(s) 803, 2513
BstAUI TGTACA 1 cut(s) 3634
BstBAI YACGTR 2 cut(s) 1121, 1523
BstBI TTCGAA 1 cut(s) 351
BstC8I GCNNGC 6 cut(s) 1047, 2134, 2377, 2683, 3418, 3566
BstDEI CTNAG 5 cut(s) 1527, 1617, 2466, 3298, 3338
BstDSI CCRYGG 2 cut(s) 3774, 3856
BstEII GGTNACC 1 cut(s) 120
BstENI CCTNNNNNAGG 1 cut(s) 1196
BstFNI CGCG 2 cut(s) 3111, 3566
BstH2I RGCGCY 1 cut(s) 2577
BstHHI GCGC 4 cut(s) 291, 2576, 3566, 3568
BstMAI GTCTC 8 cut(s) 623, 840, 880, 1049, 2053, 2888, 3466, 3658
BstMWI GCNNNNNNNGC 7 cut(s) 644, 1031, 2770, 2987, 3141, 3257, 3494
BstNI CCWGG 5 cut(s) 391, 450, 483, 2541, 2871
BstNSI RCATGY 2 cut(s) 3437, 3641
BstPI GGTNACC 1 cut(s) 120
BstSCI CCNGG 6 cut(s) 389, 448, 481, 2539, 2869, 3029
BstSFI CTRYAG 8 cut(s) 111, 405, 1040, 1773, 2251, 3039, 3903, 4083
BstSLI GKGCMC 1 cut(s) 1873
BstSNI TACGTA 1 cut(s) 1523
BstUI CGCG 2 cut(s) 3111, 3566
BstV2I GAAGAC 2 cut(s) 239, 2621
BstX2I RGATCY 5 cut(s) 727, 1719, 3523, 3553, 3723
BstXI CCANNNNNNTGG 3 cut(s) 955, 2593, 3981
BstYI RGATCY 5 cut(s) 727, 1719, 3523, 3553, 3723
BstZ17I GTATAC 2 cut(s) 3605, 3769
Bsu36I CCTNAGG 1 cut(s) 2466
BsuI GTATCC 2 cut(s) 2253, 2687
BtgI CCRYGG 2 cut(s) 3774, 3856
BtgZI GCGATG 1 cut(s) 2011
BtsI GCAGTG 1 cut(s) 3462
BtsIMutI CAGTG 9 cut(s) 414, 627, 632, 2730, 3015, 3027, 3413, 3462, 3627
Cac8I GCNNGC 6 cut(s) 1047, 2134, 2377, 2683, 3418, 3566
CfoI GCGC 4 cut(s) 291, 2576, 3566, 3568
Cfr13I GGNCC 7 cut(s) 301, 476, 665, 914, 1115, 1666, 3134
CseI GACGC 1 cut(s) 384
DdeI CTNAG 5 cut(s) 1527, 1617, 2466, 3298, 3338
DraI TTTAAA 1 cut(s) 360
DraIII CACNNNGTG 1 cut(s) 3408
DrdI GACNNNNNNGTC 1 cut(s) 103
DriI GACNNNNNGTC 2 cut(s) 574, 3713
DseDI GACNNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 2 cut(s) 160, 1422
Eam1104I CTCTTC 1 cut(s) 27
Eam1105I GACNNNNNGTC 2 cut(s) 574, 3713
EarI CTCTTC 1 cut(s) 27
EciI GGCGGA 2 cut(s) 3904, 4065
Eco105I TACGTA 1 cut(s) 1523
Eco130I CCWWGG 6 cut(s) 163, 1269, 2199, 2230, 3774, 3856
Eco147I AGGCCT 2 cut(s) 1249, 2539
Eco24I GRGCYC 1 cut(s) 1237
Eco31I GGTCTC 2 cut(s) 2888, 3658
Eco32I GATATC 1 cut(s) 202
Eco47I GGWCC 5 cut(s) 301, 665, 914, 1115, 1666
Eco57I CTGAAG 3 cut(s) 360, 1302, 2192
Eco72I CACGTG 1 cut(s) 1121
Eco81I CCTNAGG 1 cut(s) 2466
Eco91I GGTNACC 1 cut(s) 120
EcoNI CCTNNNNNAGG 1 cut(s) 1196
EcoO65I GGTNACC 1 cut(s) 120
EcoRI GAATTC 4 cut(s) 150, 1450, 3610, 3969
EcoRII CCWGG 5 cut(s) 389, 448, 481, 2539, 2869
EcoRV GATATC 1 cut(s) 202
EcoT14I CCWWGG 6 cut(s) 163, 1269, 2199, 2230, 3774, 3856
EcoT38I GRGCYC 1 cut(s) 1237
ErhI CCWWGG 6 cut(s) 163, 1269, 2199, 2230, 3774, 3856
Esp3I CGTCTC 1 cut(s) 840
FalI AAGNNNNNCTT 4 cut(s) 3249, 3281, 4050, 4082
FaqI GGGAC 2 cut(s) 828, 1679
FauI CCCGC 1 cut(s) 3104
FauNDI CATATG 2 cut(s) 1626, 2011
FbaI TGATCA 1 cut(s) 1755
FblI GTMKAC 4 cut(s) 1461, 2250, 3604, 3768
FriOI GRGCYC 1 cut(s) 1237
FspI TGCGCA 1 cut(s) 290
GlaI GCGC 4 cut(s) 290, 2575, 3565, 3567
GsaI CCCAGC 1 cut(s) 3572
GsuI CTGGAG 2 cut(s) 2562, 3231
HaeII RGCGCY 1 cut(s) 2577
HapII CCGG 7 cut(s) 57, 1052, 2126, 2767, 3030, 3218, 4074
HgaI GACGC 1 cut(s) 384
HhaI GCGC 4 cut(s) 291, 2576, 3566, 3568
Hin1I GRCGYC 1 cut(s) 395
Hin6I GCGC 4 cut(s) 289, 2574, 3564, 3566
HinP1I GCGC 4 cut(s) 289, 2574, 3564, 3566
HincII GTYRAC 1 cut(s) 1374
HindII GTYRAC 1 cut(s) 1374
HinfI GANTC 9 cut(s) 77, 211, 888, 924, 2640, 2741, 2786, 4053, 4070
HpaII CCGG 7 cut(s) 57, 1052, 2126, 2767, 3030, 3218, 4074
Hpy99I CGWCG 2 cut(s) 100, 400
HpyCH4IV ACGT 7 cut(s) 98, 500, 670, 1120, 1522, 1740, 2064
HpyF10VI GCNNNNNNNGC 7 cut(s) 644, 1031, 2770, 2987, 3141, 3257, 3494
HpyF3I CTNAG 5 cut(s) 1527, 1617, 2466, 3298, 3338
HpySE526I ACGT 7 cut(s) 98, 500, 670, 1120, 1522, 1740, 2064
Hsp92I GRCGYC 1 cut(s) 395
HspAI GCGC 4 cut(s) 289, 2574, 3564, 3566
Kpn2I TCCGGA 1 cut(s) 2125
KpnI GGTACC 1 cut(s) 443
Ksp22I TGATCA 1 cut(s) 1755
LmnI GCTCC 5 cut(s) 65, 1571, 2769, 2824, 4017
LweI GCATC 8 cut(s) 894, 1521, 2293, 2307, 2354, 2968, 3070, 3269
MaeII ACGT 7 cut(s) 98, 500, 670, 1120, 1522, 1740, 2064
MbiI CCGCTC 1 cut(s) 118
MfeI CAATTG 2 cut(s) 2913, 2994
MflI RGATCY 5 cut(s) 727, 1719, 3523, 3553, 3723
MhlI GDGCHC 2 cut(s) 1237, 1873
MlsI TGGCCA 1 cut(s) 1424
MluNI TGGCCA 1 cut(s) 1424
MlyI GAGTC 5 cut(s) 86, 882, 933, 2750, 4047
MmeI TCCRAC 9 cut(s) 222, 298, 356, 643, 892, 2036, 2842, 3213, 3760
Mox20I TGGCCA 1 cut(s) 1424
MroI TCCGGA 1 cut(s) 2125
MscI TGGCCA 1 cut(s) 1424
MseI TTAA 9 cut(s) 359, 695, 804, 1028, 1341, 1392, 1605, 2240, 2514
MslI CAYNNNNRTG 6 cut(s) 360, 428, 1709, 1751, 2591, 3467
Msp20I TGGCCA 1 cut(s) 1424
MspA1I CMGCKG 1 cut(s) 3674
MspCI CTTAAG 2 cut(s) 803, 2513
MspI CCGG 7 cut(s) 57, 1052, 2126, 2767, 3030, 3218, 4074
MspR9I CCNGG 6 cut(s) 391, 450, 483, 2541, 2871, 3031
MunI CAATTG 2 cut(s) 2913, 2994
Mva1269I GAATGC 2 cut(s) 1274, 2026
MvaI CCWGG 5 cut(s) 391, 450, 483, 2541, 2871
MvnI CGCG 2 cut(s) 3111, 3566
MwoI GCNNNNNNNGC 7 cut(s) 644, 1031, 2770, 2987, 3141, 3257, 3494
NciI CCSGG 1 cut(s) 3031
NcoI CCATGG 2 cut(s) 3774, 3856
NdeI CATATG 2 cut(s) 1626, 2011
NlaIV GGNNCC 7 cut(s) 388, 441, 1116, 1667, 1721, 2765, 3532
NmeAIII GCCGAG 2 cut(s) 138, 3665
NmuCI GTSAC 5 cut(s) 399, 1201, 1633, 2728, 2849
NsbI TGCGCA 1 cut(s) 290
NspI RCATGY 2 cut(s) 3437, 3641
NspV TTCGAA 1 cut(s) 351
OliI CACNNNNGTG 1 cut(s) 3467
PauI GCGCGC 1 cut(s) 3564
PceI AGGCCT 2 cut(s) 1249, 2539
PciI ACATGT 1 cut(s) 3637
PctI GAATGC 2 cut(s) 1274, 2026
PfeI GAWTC 4 cut(s) 211, 2640, 2786, 4070
PflMI CCANNNNNTGG 1 cut(s) 449
PfoI TCCNGGA 2 cut(s) 448, 2869
PleI GAGTC 5 cut(s) 85, 882, 932, 2749, 4047
PmaCI CACGTG 1 cut(s) 1121
PmlI CACGTG 1 cut(s) 1121
PpsI GAGTC 5 cut(s) 85, 882, 932, 2749, 4047
Ppu21I YACGTR 2 cut(s) 1121, 1523
PscI ACATGT 1 cut(s) 3637
PshBI ATTAAT 2 cut(s) 1028, 2240
PsiI TTATAA 1 cut(s) 4097
Psp6I CCWGG 5 cut(s) 389, 448, 481, 2539, 2869
PspCI CACGTG 1 cut(s) 1121
PspEI GGTNACC 1 cut(s) 120
PspFI CCCAGC 1 cut(s) 3568
PspGI CCWGG 5 cut(s) 389, 448, 481, 2539, 2869
PspN4I GGNNCC 7 cut(s) 388, 441, 1116, 1667, 1721, 2765, 3532
PspPI GGNCC 7 cut(s) 301, 476, 665, 914, 1115, 1666, 3134
PstI CTGCAG 1 cut(s) 1044
PsuI RGATCY 5 cut(s) 727, 1719, 3523, 3553, 3723
PteI GCGCGC 1 cut(s) 3564
PvuII CAGCTG 1 cut(s) 3674
RseI CAYNNNNRTG 6 cut(s) 360, 428, 1709, 1751, 2591, 3467
SaqAI TTAA 9 cut(s) 359, 695, 804, 1028, 1341, 1392, 1605, 2240, 2514
Sau96I GGNCC 7 cut(s) 301, 476, 665, 914, 1115, 1666, 3134
ScaI AGTACT 2 cut(s) 2331, 3343
SchI GAGTC 5 cut(s) 86, 882, 933, 2750, 4047
ScrFI CCNGG 6 cut(s) 391, 450, 483, 2541, 2871, 3031
SduI GDGCHC 2 cut(s) 1237, 1873
SfaNI GCATC 8 cut(s) 894, 1521, 2293, 2307, 2354, 2968, 3070, 3269
SfcI CTRYAG 8 cut(s) 111, 405, 1040, 1773, 2251, 3039, 3903, 4083
SfiI GGCCNNNNNGGCC 1 cut(s) 3141
SfuI TTCGAA 1 cut(s) 351
SinI GGWCC 5 cut(s) 301, 665, 914, 1115, 1666
SmiI ATTTAAAT 1 cut(s) 360
SmiMI CAYNNNNRTG 6 cut(s) 360, 428, 1709, 1751, 2591, 3467
SmlI CTYRAG 4 cut(s) 803, 1133, 2312, 2513
SmoI CTYRAG 4 cut(s) 803, 1133, 2312, 2513
SnaBI TACGTA 1 cut(s) 1523
SseBI AGGCCT 2 cut(s) 1249, 2539
SsiI CCGC 7 cut(s) 118, 304, 346, 3111, 3467, 3915, 4050
SspI AATATT 3 cut(s) 718, 2949, 3306
StuI AGGCCT 2 cut(s) 1249, 2539
StyD4I CCNGG 6 cut(s) 389, 448, 481, 2539, 2869, 3029
StyI CCWWGG 6 cut(s) 163, 1269, 2199, 2230, 3774, 3856
SwaI ATTTAAAT 1 cut(s) 360
TaiI ACGT 7 cut(s) 101, 503, 673, 1123, 1525, 1743, 2067
TaqI TCGA 7 cut(s) 45, 351, 1858, 2113, 2436, 2942, 3165
TatI WGTACW 7 cut(s) 1146, 2329, 3341, 3369, 3634, 3681, 4147
TfiI GAWTC 4 cut(s) 211, 2640, 2786, 4070
Tru1I TTAA 9 cut(s) 359, 695, 804, 1028, 1341, 1392, 1605, 2240, 2514
Tru9I TTAA 9 cut(s) 359, 695, 804, 1028, 1341, 1392, 1605, 2240, 2514
TscAI CASTG 9 cut(s) 414, 627, 639, 2737, 3015, 3027, 3413, 3469, 3627
TseFI GTSAC 5 cut(s) 399, 1201, 1633, 2728, 2849
Tsp45I GTSAC 5 cut(s) 399, 1201, 1633, 2728, 2849
TspGWI ACGGA 1 cut(s) 1032
TspRI CASTG 9 cut(s) 414, 627, 639, 2737, 3015, 3027, 3413, 3469, 3627
Van91I CCANNNNNTGG 1 cut(s) 449
Vha464I CTTAAG 2 cut(s) 803, 2513
VpaK11BI GGWCC 5 cut(s) 301, 665, 914, 1115, 1666
VspI ATTAAT 2 cut(s) 1028, 2240
XagI CCTNNNNNAGG 1 cut(s) 1196
XapI RAATTY 9 cut(s) 150, 326, 1431, 1450, 2039, 2185, 3355, 3610, 3969
XceI RCATGY 2 cut(s) 3437, 3641
XcmI CCANNNNNNNNNTGG 2 cut(s) 505, 1844
XmaJI CCTAGG 1 cut(s) 2230
XmiI GTMKAC 4 cut(s) 1461, 2250, 3604, 3768
ZrmI AGTACT 2 cut(s) 2331, 3343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.